@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VMH3: (2017-11-08 )
MLETLLQAILEQIDEPKKDLEKNLRALLNETVEKLDLVSKQEIERQKTALHLANQRLEALQKQVSLLEEALKNKK
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------.....------...---.10.--------.......20.....-------...--.30.-..---------.....40...------..----...50..------.......60..--......70....------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------
M
L
E
T
L
------
L
Q
A
---
I
L
E
Q--------IDE
P
K
K
D
L
-
E
K
N
L
R
-------
A
L
L
--
N
E
T
V
-
E
K
---------
L
D
L
V
S
K
Q
E
I
E
------
R
Q
----
K
T
A
L
-
H
L
------
A
N
Q
R
L
E
A
L
Q
K
Q
--
V
S
L
L
E
E
A
LKNKK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
67.75
24%
116
- C1 -
-
2LW1
-
UUP_ECOLI
A:
[551-635]
--------------------------------------------------------------------------------------------------------------KAETVKRSSS
K
L
S
Y
K
------
L
Q
R
---
E
L
E
Q
--------
L
P
Q
L
L
E
D
L
-
E
A
K
L
E
-------
A
L
Q
--
T
Q
V
A
D
A
S
---------
F
F
S
Q
P
H
E
Q
T
Q
------
K
V
----
L
A
D
M
-
A
A
------
A
E
Q
E
L
E
Q
A
F
E
R
--
W
E
Y
L
E
A
L
K
N
G
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
62.91
31%
159
- C1 -
-
5J9Q
-
H2AZ_YEAST (first)
D:
[53-113]
-----------------------------------------------------------------------------------------------------------------------------------------
I
R
Q
Q
--------
G
S
I
P
K
H
P
Q
-
E
D
G
L
D
-------
K
E
I
--
K
E
S
L
-
L
K
---------
C
Q
S
L
Q
R
E
K
C
V
------
L
A
----
N
T
A
L
-
F
L
------
I
A
R
H
L
N
K
L
E
K
N
--
I
A
L
L
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
60.61
31%
177
- C1 -
-
5J9U
-
YNG2_YEAST
D:
[53-113]
-----------------------------------------------------------------------------------------------------------------------------------------
I
R
Q
Q
--------
G
S
I
P
K
H
P
Q
-
E
D
G
L
D
-------
K
E
I
--
K
E
S
L
-
L
K
---------
C
Q
S
L
Q
R
E
K
C
V
------
L
A
----
N
T
A
L
-
F
L
------
I
A
R
H
L
N
K
L
E
K
N
--
I
A
L
L
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
58.23
31%
187
- C1 -
-
5J9W
-
YNG2_YEAST
H:
[53-113]
-----------------------------------------------------------------------------------------------------------------------------------------
I
R
Q
Q
--------
G
S
I
P
K
H
P
Q
-
E
D
G
L
D
-------
K
E
I
--
K
E
S
L
-
L
K
---------
C
Q
S
L
Q
R
E
K
C
V
------
L
A
----
N
T
A
L
-
F
L
------
I
A
R
H
L
N
K
L
E
K
N
--
I
A
L
L
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
57.91
31%
184
- C1 -
-
5J9T
-
YNG2_YEAST
H:
[53-113]
-----------------------------------------------------------------------------------------------------------------------------------------
I
R
Q
Q
--------
G
S
I
P
K
H
P
Q
-
E
D
G
L
D
-------
K
E
I
--
K
E
S
L
-
L
K
---------
C
Q
S
L
Q
R
E
K
C
V
------
L
A
----
N
T
A
L
-
F
L
------
I
A
R
H
L
N
K
L
E
K
N
--
I
A
L
L
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
53.52
25%
101
* C1 *
-
5J9T
-
YNG2_YEAST
D:
[1-119]
----------------------------------------------------------------------------MD
P
S
L
V
L
E
Q
T
I
Q
D
V
S
N
L
P
S
E
F
R
Y
L
L
E
E
I
G
S
N
D
L
K
L
I
E
E
K
K
K
Y
E
Q
K
E
S
Q
I
------
H
K
F
---
I
R
Q
Q
--------
G
S
I
P
K
H
P
Q
-
E
D
G
L
D
-------
K
E
I
--
K
E
S
L
-
L
K
---------
C
Q
S
L
Q
R
E
K
C
V
------
L
A
----
N
T
A
L
-
F
L
------
I
A
R
H
L
N
K
L
E
K
N
--
I
A
L
L
E
E
D
G
V
L
A
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
52.80
22%
95
- C1 -
-
5H20
3
?
A:
[4-106]
---------------------------------------------------------------------------------------------------------D
N
V
K
S
Q
M
R
K
G
M
L
E
Y
C
I
M
L
L
L
H
K
E
P
A
Y
A
S
D
---
I
I
Q
K
--------
L
K
E
A
R
L
I
V
V
E
G
T
L
Y
-------
P
L
L
--
T
R
L
K
-
N
D
----------
D
L
L
S
Y
E
W
V
E
S
TQG
P
P
R
K
----
Y
Y
K
L
T
G
K
------
G
E
S
F
L
G
E
L
E
A
S
--
W
K
E
L
N
E
T
V
N
H
I
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
50.23
33%
-396
- C1 -
-
5KB2
-
?
A:
[7-30]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
L
-
A
A
------
A
E
S
K
C
Q
A
L
E
K
K
--
L
Q
A
L
E
K
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
48.16
16%
-302
- C1 -
-
3P8C
1
BRK1_HUMAN
E:
[32-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
--
A
D
F
L
-
N
S
---------
F
D
M
S
C
R
S
R
L
A
------
T
------------------
L
N
E
K
L
T
A
L
E
R
R
--
I
E
Y
I
E
A
R
V
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
48.03
29%
43
* C2 *
-
5TKZ
1
?
A:
[4-92]
------------------------------------------------------------------------------------------------------------------------
Q
V
R
T
L
------
F
V
S
---
G
L
P
M
---------
D
A
K
P
R
E
L
-
Y
L
L
F
R
GARGYE
G
A
L
L
--
K
M
T
S
-
K
N
GKP
T
S
P
V
G
F
V
T
F
L
S
Q
Q
D
A
Q
------
D
A
----
R
K
M
L
-
Q
--------
G
V
R
F
D
P
E
A
A
Q
--
V
L
R
L
E
L
A
K
S
N
T
K
V-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
47.46
30%
-
- C1 -
-
3PP5
2
BRK1_DICDI
A:
[33-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
F
L
-
N
K
---------
F
E
L
S
T
R
N
K
L
S
------
D
------------------
L
N
E
K
L
T
I
L
D
R
Q
--
V
D
Y
L
E
A
T
F
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
47.38
30%
92
- C1 -
-
4Q6O
5
?
A:
[21-437]
MIEKAPTNVEDRDK
A
P
H
L
L
L
L
A
GIQGDE
P
G
G
F
N
A
T
N
L
F
L
M
HYSVL
K
G
L
V
E
V
VPVLN
K
P
S
M
L
R
NHRGLYGDMNRKFAALDKNDPE
Y
P
T
I
Q
E
I
K
S
L
I
A
KPSID
A
V
L
H
L
H
D
G
G
G
YYRPVYVDA
M
L
N
P
K
------
R
W
G
N
C
F
I
I
D
Q
---------
D
E
V
K
G
A
K
-
F
P
N
L
L
-------
A
F
A
--
N
N
T
I
-
E
S
---------
I
N
A
H
L
L
H
P
I
E
------
E
Y
----
H
L
K
N
-
T
R
------
T
A
Q
G
D
T
E
M
Q
K
----
A
L
T
F
Y
A
I
N
Q
K
K
S
A
F
A
N
E
A
S
KELP
L
A
S
R
V
F
Y
H
L
Q
A
I
E
G
L
L
N
Q
L
NI
P
F
K
R
DFDLN
P
N
S
V
H
A
L
I
N
DKN
L
W
A
K
I
SSLPKMPLFNLRPKLNH
F
P
L
P
H
NTKIPQI
P
I
E
S
NAYI
V
G
L
V
K
N
KQ
E
V
F
L
K
YGNKLMTRLS
P
F
Y
I
E
FDPSLE
E
V
K
M
Q
I
DN
K
D
Q
M
V
K
IG
S
V
V
E
V
K
E
S
F
Y
I
H
A
MDN
I
R
A
N
VIGFSVSNENKPNEAGYTIKFKDFQKRFSLDKQER
I
Y
R
I
E
F
Y
KNNAFS
G
M
I
L
V
K
F
V
27
Fugue
46.83
18%
-2
- C1 -
-
3KLT
3
VIME_HUMAN
A:
[2-72]
------------------------------------------------------------------------------------------------------------------------
D
L
T
A
A
------
L
R
D
---
V
R
Q
Q
--------
Y
E
S
V
A
A
K
N
-
L
Q
E
A
E
-------
E
W
Y
--
K
S
K
F
-
A
D
---------
L
S
----
E
A
A
N
------
R
N
----
N
D
A
L
-
R
Q
------
A
K
Q
E
S
T
E
Y
R
R
Q
--
V
Q
S
L
T
C
E
V
D
A
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
45.45
33%
-304
- C1 -
-
2PNV
-
KCNN2_RAT
B:
[495-515]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
------
L
N
E
R
S
E
D
F
E
K
R
--
I
V
T
L
E
T
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
42.03
26%
34
- C2 -
-
2MN4
-
?
A:
[1-94]
-----------------------------------------------------------------------------------------------------------------MT
P
E
Q
R
E
F
L
P
E
I
------
L
A
E
---
I
I
A
N
--------
L
D
P
T
K
I
L
E
-
E
L
L
R
R
-------
G
L
L
T
P
A
E
L
Q
-
E
V
---------
L
D
L
K
T
P
E
E
Q
A
------
K
K
----
L
I
D
F
-
I
L
K
L
SPAD
V
Q
A
R
I
N
V
L
R
A
H
GY
Q
A
L
A
D
K
L
N
K
Y
L
T
LE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
41.17
24%
126
- C1 -
-
2YY0
-
MYCBP_HUMAN
D:
[58-91]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
N
P
E
I
E
------
L
L
----
R
L
E
L
-
A
E
------
M
K
E
K
Y
E
A
I
V
E
E
--
N
K
K
L
K
A
K
L
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
40.33
17%
33
- C1 -
-
1JYO
-
SICP_SALTY
A:
[1-130]
------------------------------------------------------------------L
Q
A
H
Q
D
I
I
A
N
I
G
E
K
L
GLP
L
T
F
D
DNN
Q
C
L
L
L
L
DSD
I
F
T
S
I
E
A
K
DD
I
W
L
L
N
G
M
I
I
P
L
S
P
V
C
------
G
D
S
---
I
W
R
Q
--------
I
M
V
I
N
G
E
L
-
A
A
N
N
E
-------
G
T
L
--
A
Y
I
D
-
A
A
---------
E
T
L
L
L
I
H
A
I
T
------
D
L
----
T
N
T
Y
-
H
I
------
I
S
Q
L
E
S
F
V
N
Q
Q
--
E
A
L
K
N
I
L
Q
E
Y
A
K
V-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
40.24
21%
-166
- C1 -
-
5U5A
-
?
A:
[3-30]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
------
A
L
----
K
-
E
N
-
A
A
------
L
K
E
E
I
A
A
L
K
K
E
--
I
A
A
L
-
K
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
40.16
17%
107
- C1 -
-
5E98
7
HPSE_HUMAN
A:
[5-389]
-------------------------------K
F
K
N
S
T
Y
S
R
S
S
V
D
V
L
Y
T
F
A
N
C
S
G
L
D
L
I
F
G
L
NALLRTADLQWNS
S
N
A
Q
L
L
L
D
Y
C
S
S
K
GYN
I
S
W
E
L
G
NEPNSFLKKAD
I
F
I
N
G
S
Q
L
G
E
D
F
I
Q
L
H
K
L
------
L
R
K
---
S
T
F
K
N
A
K
L
Y
G
PD
V
G
Q
P
R
R
K
T
-
A
K
M
L
K
-------
S
F
L
--
K
A
G
G
-
E
V
---------
I
D
S
V
T
W
H
H
Y
Y
------
L
N
GRTA
T
R
E
D
-
F
L
------
N
P
D
V
L
D
I
F
I
S
S
--
V
Q
K
V
F
Q
V
V
E
S
T
R
PGKKVWLGETSSAYGGGAPLLSDTFAA
G
F
M
W
L
D
K
L
G
L
S
A
R
M
GIE
V
V
M
R
QVFFGAGNYHLVDENFDPL
P
D
Y
W
L
S
L
L
F
K
K
L
VGT
K
V
L
M
A
S
V
Q
GSKRRK
L
R
V
Y
L
H
CTNTDNPRYKEG
D
L
T
L
Y
A
I
N
LHN
V
T
K
Y
L
R
L
P
Y
PFSN
K
Q
V
D
K
Y
L
L
R
P
L
G
PHGLLSK
S
V
Q
L
NG
L
T
L
K
M
VDDQTLPPL
M
E
K
P
L
RPGS
S
L
G
L
P
A
F
S
Y
S
F
F
V
I
R
NAKVAACI-------------
18
HHSearch
40.15
29%
-
- C1 -
-
2AKF
-
C:
[10-30]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
------
L
N
A
I
V
Q
K
L
Q
E
R
--
L
D
R
L
E
E
T
V
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------