@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VN19: (2017-11-12 )
MGDYLMNMLANISFDAAVFTSLEVMNVGVEDGVVKFSLSVQNAEHIYIVASVKGIEKNDTFEYGEGLDYQDWKDVDYTMMTVDSSSRPHVDHFDYVDAIEGMPFALTSTQILKLNEYLEELAREEKINELRGGWWELDI
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....-....10........20........-------30........40....-----....50........60........70.....--...80.......-.90........100.......-------110.......120..-----...---..130.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
G
D
Y
L
-
M
N
M
L
ANISF
D
A
A
V
F
T
S
L
E
V
M
NVGV-------ED
G
V
V
K
F
S
L
S
VQNA
E
H
-----
I
Y
I
V
A
S
VKGIEKNDTFEYGEGLDYQDWKDV
D
--
Y
T
M
M
T
VDSSSRP-HVDHF
D
Y
V
D
A
IEGMPFALT
S
T
-------
Q
I
L
K
L
N
E
Y
L
E
E
L
A
R
E
-----
E
K
I
---
N
E
LRG
G
W
W
ELDI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
57.55
27%
-55
- C1 -
-
3L8D
-
?
A:
[47-138]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
Q
Y
V
K
K
E
A
E
V
L
D
V
G
C
-------
G
D
G
Y
G
T
Y
K
L
S
R
T
G
Y
K
A
-----
V
G
V
D
I
S
E
V
M
I
Q
K
G
K
--
E
R
G
E
G
--------
P
D
--
L
S
F
I
K
G
D
L
S
S
L
P
F
E
N
E
Q
F
E
A
I
M
A
I
N
S
L
E
W
--
T
E
E
-------
P
L
R
A
L
N
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
48.75
28%
60
- C1 -
-
4BQ2
6
?
A:
[2-747]
---------------------------------------------------------------------------------------------------------SHMLFDFENDQVPSN
I
H
F
L
N
A
R
A
S
I
E
T
Y
T
G
ING
E
P
S
K
G
L
K
L
A
M
QSKQHS
Y
T
G
L
A
I
V
P
EQPWDWSEFT
S
A
S
L
Y
F
D
I
V
S
V
G
D
H
S
T
Q
F
Y
L
D
V
T
D
QNG
A
V
F
T
R
S
I
D
I
P
V
G
K
M
Q
S
Y
Y
A
K
LSGHDLEVPD
S
G
D
V
N
D
L
N
L
A
S
G
L
R
S
N
P
P
T
W
T
S
D
D
R
Q
F
V
W
M
WGVKNLD
L
S
G
I
A
K
I
S
L
S
V
Q
S
A
M
H
D
K
T
V
I
I
D
N
I
R
I
Q
P
N
P
P
Q
D
E
N
F
L
V
G
L
V
D
E
F
G
Q
N
A
K
V
D
--
Y
K
G
-
K
I
H
S
L
E
E
L
-
H
A
A
R
D
V
E
L
A
E
L
D
G
K
P
M
P
S
R
S
K
FGGWLAG
P
K
L
K
A
T
G
Y
F
----
R
T
-----
E
K
I
---
N
---
G
K
W
M
L
V
D
P
EG
Y
P
Y
F
A
T
G
L
D
IIRLSNSSTMTGYDYDQAT
V
A
Q
R
S
ADDVTPEDSKGLMAVS
E
K
S
F
A
T
RHLAS
P
T
R
A
A
M
FN
W
L
P
D
YDHPLANH
Y
N
Y
R
RSAHSGPLK
R
G
E
A
Y
S
F
Y
S
A
N
L
E
R
K
YGETYPG
S
Y
L
D
K
W
R
E
V
T
V
D
R
M
L
N
W
GFT
S
L
G
N
WTDPAYYDNNR
I
P
F
F
A
N
G
W
VIGD
F
K
T
V
S
SGADFW
G
A
M
P
DVFD
P
E
F
K
V
R
A
M
E
T
A
R
V
V
S
E
E
I
KNSPWCV
G
V
F
I
D
NEKSFGRPDS
D
K
A
Q
Y
G
I
P
I
H
T
L
G
RPSEGV
P
T
R
Q
A
F
S
K
L
L
K
A
K
YKT
I
A
A
L
N
N
A
W
GLKLSS
W
A
E
F
D
L
GVDVKALPVT
D
T
L
R
A
D
Y
S
M
L
L
S
A
Y
A
D
Q
Y
F
K
V
V
H
G
A
V
E
H
Y
MPN
H
L
Y
L
G
ARFPDWGMP
M
E
V
V
K
A
A
A
K
YAD
V
V
S
Y
N
S
YKEGLPKQKWAFLAELD
K
P
S
I
I
G
E
F
H
I
G
A
MDHGSYHPGL
I
H
A
AS
Q
A
D
R
G
E
M
Y
K
D
Y
M
Q
S
V
I
D
NPYFV
G
A
H
W
FQYMDSPLTGRAYDGENYNVGFVDVTDTPY
Q
E
M
V
D
A
A
K
E
V
N
A
K
I
YTERL
24
Fugue
48.06
13%
-75
- C1 -
-
1PC6
2
NINB_LAMBD
A:
[1-141]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
L
T
-
F
E
I
R
S
P
A
H
Q
Q
N
A
I
H
A
V
Q
Q
I
L
P
D
P
T
-------
K
P
I
V
V
T
I
Q
E
R
N
R
S
L
D
Q
-----
N
R
K
L
W
A
C
L
G
D
V
S
R
Q
V
E
W
H
G
R
W
L
D
A
E
S
W
K
C
V
---
F
T
A
A
L
K
Q
Q
D
V
V
P
-
N
L
A
G
N
G
F
V
V
I
G
Q
S
T
S
-
R
M
R
V
G
-------
E
F
A
E
L
L
E
L
I
Q
A
F
G
T
E
-----
R
G
V
---
K
W
S
D
E
A
R
L
A
L
E
W
K
A
R
W-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
48.00
27%
124
- C2 -
-
5IW7
-
TSR1_YEAST
A:
[44-703]
L
D
S
I
E
N
R
K
LFEGKNG
A
A
K
I
I
T
I
V
P
LVNDLD
P
L
D
I
L
Y
K
L
L
KCADDEGIMVQESKR
I
F
N
V
H
I
KKFK
S
N
L
K
I
I
I
P
DMTN
F
L
N
I
L
D
C
A
K
V
AD
F
V
V
F
G
L
S
GVQEVDEEF
G
E
Q
I
I
R
A
L
E
L
Q
GIA
S
Y
I
G
V
I
SNLSAVHEK
E
K
F
Q
L
D
V
K
Q
S
L
E
S
Y
F
K
H
F
FPSEE
R
V
Y
N
LEK
N
S
D
A
L
N
V
L
R
T
L
C
Q
R
L
P
R
S
I
N
W
R
D
N
R
G
Y
V
V
A
D
F
V
D
F
V
E
T
S
PD
S
G
D
L
V
I
E
G
T
V
R
G
IGFNAN
R
L
V
H
I
P
D
F
G
D
F
Q
-
L
N
K
I
E
K
I
S
-
E
S
T
V
F
E
S
N
M
---------------------------------------------
N
R
D
T
L
D
E
Y
A
P
E
G
T
E
D
W
S
D
Y
D
ED
F
E
L
T
T
A
R
Y
D
D
H
G
-
F
L
D
R
-
E
F
P
D
E
I
E
L
E
P
S
-----------------
E
S
A
I
E
R
L
K
R
Y
-----
R
G
L
---
K
N
L
Y
N
C
D
W
Q
V
D
E
KDPSSPAEWKRLLRIGN
Y
K
N
T
K
N
R
I
I
K
E
T
K
N
E
AQAIAG
D
R
I
R
M
F
I
RFPKFLLEKIQDPKQ
L
L
F
A
V
Y
G
L
L
L
HEHKNAV
V
N
F
S
L
Q
R
W
EQYD
K
P
V
P
SQ
E
P
I
V
V
Q
Y
GVRRYTIQ
P
L
F
S
Q
GSNSPNN
V
H
K
Y
E
RFLHPD
T
V
S
V
A
T
C
I
A
P
V
D
FTQ
S
P
A
I
F
F
K
P
S
PTDAKN
I
E
L
I
GHGTFLNADHS
R
I
L
A
K
R
A
I
L
T
G
H
P
F
R
FHKT
V
V
T
V
R
YMFFR
P
E
D
V
E
W
F
KS
I
P
L
F
T
KSG
R
S
G
F
I
K
E
SLGTHG
Y
F
K
A
T
F
DGLSAQ
D
V
V
A
M
S
L
Y
K
R
M
W
P
M
P
S
L
P
W
N
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
46.44
33%
-324
- C1 -
-
3CP5
1
?
A:
[103-123]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
L
S
E
E
-------
Q
A
R
A
I
L
E
Y
L
R
Q
V
A
E
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
45.48
37%
-145
- C1 -
-
1X4T
-
ISY1_MOUSE
A:
[47-81]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
L
G
E
F
-------
R
I
R
D
L
N
D
E
I
N
K
L
L
R
E
K
G
H
W
E
V
R
I
---
K
E
L
G
G
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
44.98
17%
-40
- C1 -
-
2Q97
1
?
T:
[1-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
Q
E
L
-
G
L
L
R
P
E
E
R
L
I
A
G
Q
A
K
A
A
A
L
Q
T
V
H
Q
-------
L
G
A
V
---
A
L
T
P
E
Q
A
K
A
-----
A
L
L
D
E
I
L
R
A
T
Q
N
L
D
L
R
K
Y
-
E
N
L
N
T
E
Q
Q
K
A
Y
E
--
Q
V
Q
R
D
L
S
Q
L
S
P
E
---------------------
T
-------
K
A
L
L
I
E
N
Q
R
K
E
K
T
L
L
-----
E
K
A
---
R
K
L
F
Q
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
HHSearch
44.83
24%
-302
* C1 *
-
3DP5
1
?
A:
[82-98]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
P
A
-------
D
A
L
K
I
G
E
Y
V
V
A
S
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
44.78
32%
-91
- C1 -
-
4V38
-
?
A:
[301-355]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
T
N
I
P
A
N
I
S
F
E
I
L
M
M
T
G
L
L
P
D
K
V
G
G
-------
V
A
S
S
L
Y
F
S
L
P
K
E
K
I
S
H
-----
I
I
F
T
S
N
K
K
I
K
N
K
E
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
44.69
32%
-83
- C1 -
-
4V2U
-
?
A:
[301-355]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
T
N
I
P
A
N
I
S
F
E
I
L
M
M
T
G
L
L
P
D
K
V
G
G
-------
V
A
S
S
L
Y
F
S
L
P
K
E
K
I
S
H
-----
I
I
F
T
S
N
K
K
I
K
N
K
E
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
44.10
32%
-118
- C1 -
-
4V3C
1
?
A:
[304-358]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
T
N
I
P
A
N
I
S
F
E
I
L
M
M
T
G
L
L
P
D
K
V
G
G
-------
V
A
S
S
L
Y
F
S
L
P
K
E
K
I
S
H
-----
I
I
F
T
S
N
K
K
I
K
N
K
E
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
44.01
32%
-111
- C1 -
-
4V3B
1
?
A:
[304-358]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
T
N
I
P
A
N
I
S
F
E
I
L
M
M
T
G
L
L
P
D
K
V
G
G
-------
V
A
S
S
L
Y
F
S
L
P
K
E
K
I
S
H
-----
I
I
F
T
S
N
K
K
I
K
N
K
E
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
43.63
32%
-88
- C1 -
-
4V39
-
?
A:
[301-355]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
T
N
I
P
A
N
I
S
F
E
I
L
M
M
T
G
L
L
P
D
K
V
G
G
-------
V
A
S
S
L
Y
F
S
L
P
K
E
K
I
S
H
-----
I
I
F
T
S
N
K
K
I
K
N
K
E
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
43.25
29%
-101
- C1 -
-
2C83
-
?
A:
[328-384]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
T
N
I
P
A
N
I
S
F
E
V
L
M
M
T
G
L
L
P
D
K
V
G
G
-------
V
A
S
S
L
Y
F
S
L
P
K
E
K
I
S
H
-----
I
I
F
T
S
N
K
Q
V
K
S
K
E
D
A
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
HHSearch
43.15
25%
-226
- C1 -
-
1KIB
1
CYC6_ARTMA
D:
[69-88]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
P
K
-------
Q
I
E
D
V
A
A
Y
V
V
D
Q
A
E
K
-----
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
43.00
29%
-99
- C1 -
-
2EX0
-
?
A:
[328-384]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
T
N
I
P
A
N
I
S
F
E
V
L
M
M
T
G
L
L
P
D
K
V
G
G
-------
V
A
S
S
L
Y
F
S
L
P
K
E
K
I
S
H
-----
I
I
F
T
S
N
K
Q
V
K
S
K
E
D
A
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
HHSearch
42.79
24%
-250
- C1 -
-
2CE0
1
CYC6_ARATH
A:
[78-98]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
Q
D
E
-------
E
I
K
L
L
A
E
F
V
K
F
Q
A
D
Q
-----
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
42.24
29%
-102
- C1 -
-
3S44
1
?
A:
[304-360]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
T
N
I
P
A
N
I
S
F
E
V
L
M
M
T
G
L
L
P
D
K
V
G
G
-------
V
A
S
S
L
Y
F
S
L
P
K
E
K
I
S
H
-----
I
I
F
T
S
N
K
Q
V
K
S
K
E
D
A
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
42.00
29%
-95
- C1 -
-
2II6
1
?
A:
[304-360]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
T
N
I
P
A
N
I
S
F
E
V
L
M
M
T
G
L
L
P
D
K
V
G
G
-------
V
A
S
S
L
Y
F
S
L
P
K
E
K
I
S
H
-----
I
I
F
T
S
N
K
Q
V
K
S
K
E
D
A
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
41.89
10%
-86
- C1 -
-
4P2I
-
SNX19_MOUSE
A:
[532-664]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
V
V
I
Q
N
L
R
I
T
G
T
I
T
-------
A
R
E
H
S
G
T
G
F
H
P
Y
T
L
Y
T
-----
V
K
Y
E
T
V
L
N
Q
Q
L
A
Y
H
T
V
N
R
----
R
Y
R
E
F
L
N
L
Q
--
T
R
L
E
----
E
K
P
D
-
L
R
K
F
I
K
N
V
K
G
P
K
K
M
D
S
D
R
V
E
A
-------
R
K
S
L
L
E
S
F
L
K
Q
L
C
A
I
-----
P
E
I
G
N
S
E
E
V
Q
E
-
F
L
A
L
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------