@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VN33: (2017-11-12 )
MAYDMVSSTNLDKNIIGVHLMIHSKIIGIGVITGLCSMAALAEPAVQPGDTLESLSKVKVTTTVSGQPGSISDLVNSGQVQQVSAAPTDAVPPAPNQAAPAPQDPNTPPPAANPNQSADPMAKDGALPADAPMPQAQ
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10...------..-...20.......-.30---........40..--...---.-----..50...-----.-....60-........70.-.......80.......-----.90-.......-.100...----....--110..-.....120..--------------------.....-----130....-.-.----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAYDMVSSTNLDK
N
------
I
I
-
G
V
H
L
M
I
H
S
K
I
I
G
-
I
G
V
---
I
T
G
L
C
S
M
A
A
LAE--PAV---Q-----PG
D
T
L
E
S
-----L-S
K
V
K
V
T
-
T
T
VSGQPG
S
I
S
-
D
L
VNSG
Q
V
Q
Q
VSAAPT-----DAV-PPAPNQA-APAPQDP----NTPP--PAANP-NQSADPMAKD--------------------GALPA-----D-APMPQ-A-Q----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
64.12
18%
33
- C6 -
-
4NNG
-
RS1_MYCTU
A:
[278-434]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NLY
F
Q
H
M
R
H
F
A
R
T
H
A
I
G
Q
I
------
V
A
-
G
K
V
T
K
L
V
P
F
G
A
F
-
V
R
V
EEG
I
E
G
L
V
H
I
S
E
L
A
E
--
R
H
V
---
E
V----
P
D
Q
V
V
A
V
-----
G
-
D
D
A
M
V
K
V
I
D
I
D
L
E
R
R
R
I
S
L
S
L
K
Q
A
N
E
D
Y
T
E
E
F
D
P
A
KYGMA
D
S
Y
-
D
E
Q
G
N
Y
I
-
F
P
E
G
F
D
A
----
E
T
N
E
W-
L
E
G
F
E
-
K
Q
R
A
E
W
E
A
R
Y
--------------------
A
E
A
E
R
-----
R
-
H
K
M
H
T
-
A
-
Q
M
E
K-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
60.53
18%
5
* C8 *
-
5L9W
2
APCB_AROAE
C:
[1-127]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
E
R
I
R
F
T
E
Y
L
D
L
D
------
L
N
-
D
E
H
W
Y
C
H
D
C
--
G
-
T
K
L
---
I
S
A
R
E
S
Y
K
K
G
C
L
--
V
A
E
---
R
R
----
P
H
E
I
H
N
P
-----
V
-
I
E
G
E
Y
S
-
F
A
P
D
E
N
W
V
R
I
L
-
E
F
Y
C
P
G
C
T
R
Q
I
E
---
T
-----
E
Y
L
-
P
P
G
H
P
I
T
-
V
D
I
E
V
D
-------
I
D
--
S
L
K
A
R
-
L
K
K
G
V
I
V
I
K
D
--------------------
G
K
L
T
K
----------
P
E
-
A
-
E
V---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
55.33
22%
46
- C3 -
-
4NH0
2
ECCC_THECD
A:
[246-1147]
SANMT
L
T
S
L
L
HIDNPYNLD
P
A
V
L
W
RPRPQRNRLRVPIGLDADG
R
P
L
E
L
D
IKESAQGGMGP
H
G
L
C
I
G
A
TGSG
K
S
E
L
L
R
T
L
V
L
A
L
A
M
T
H
SPEV
L
N
F
V
L
V
D
FKGGATFLGMEGLRHVS
A
I
I
T
NLEEELP
L
V
D
R
M
Y
D
A
L
H
G
E
M
V
R
R
Q
E
H
L
R
H
S
GNYAS
L
R
D
Y
E
K
A
R
M
E
G
A
P
L
P
P
M
P
T
L
F
I
V
L
D
E
F
S
E
L
L
S
A
KPDF
A
E
L
F
V
M
I
G
R
LGRSL
G
V
H
L
L
L
A
S
Q
R
L
E
E
G
------
K
L
R
G
L
D
T
H
L
S
Y
R
I
-
G
-
L
R
T
---
F
S
A
M
E
S
R
V
V
L
G
V
--
P
D
A
---
Y
ELPPS
P
G
N
G
Y
L
K
F
AT
E
P
L
-
V
R
F
K
A
A
-
Y
V
S
G
P
V
D
E
E
S
E
-
S
L
F
D
V
V
V
R
Q
L
A
G
H
G
P
E
-----
P
H
Q
-
I
W
L
P
P
L
D
-
V
P
P
T
L
D
E
----
L
L
P
P
LS
P
S
A
A
H
-
G
Y
T
A
D
G
W
E
W
R
--------------------
G
R
L
H
A
V
V
GLV
D
-
R
P
F
D
Q
-
R
-
R
D
P
YWLDLSGGAG
H
V
G
V
A
G
G
P
QTG
K
S
T
M
L
R
T
L
I
T
S
L
A
L
L
H
TPQE
V
Q
F
Y
C
LDFGGGTLAGLAELPHVG
S
V
A
T
RLD
A
D
R
I
R
R
T
V
A
E
V
S
A
L
L
E
Q
R
E
Q
E
F
T
E
R
GIDS
M
A
T
Y
R
R
L
R
A
T
GEYAGDGF
G
D
V
F
L
V
V
DN
W
L
T
L
R
Q
DY
E
A
L
E
D
S
I
T
Q
L
A
A
R
GLGYG
I
H
V
V
L
S
S
NKWSEFR
T
S
I
R
D
L
LG
T
K
L
E
L
RLGDPYESEVD
R
K
K
A
A
N
VPENRPG
R
G
L
T
RDG
Y
H
F
L
T
A
L
PRIDGDTSAET
L
T
E
G
I
A
T
T
V
K
T
I
R
E
A
W
HGPTAPPVRMLPNVLPAAQLPSAAESGTRIPIGIDEDSL
S
P
V
Y
L
D
FNTDP
H
F
L
V
F
G
D
T
ECG
K
S
N
L
L
R
L
I
T
A
G
I
I
E
R
Y
TPQQ
A
R
L
I
F
IDYSRSLLDVATTEHQIGYAAS
S
T
A
A
S
S
L
V
R
D
I
K
G
A
M
E
A
R
LPPPDLT
P
E
Q
L
R
S
RSW
W
T
G
A
E
L
F
L
V
V
D
DYEMVATSDNPLRPLAELLPQARDIG
L
H
L
I
I
A
R
S
MGGAGRALYE
P
I
I
Q
R
I
K
E
M
A
S
P
G
L
V
M
S
GNKDEGILLGN
V
K
P
H
KLPQG
R
G
Y
F
V
E
RRS
G
T
R
L
I
Q
T
A
Y
R
E
S
12
PsiBlast_PDB
55.03
28%
-23
- C10 -
-
3FA6
1
RABP2_HUMAN
A:
[7-59]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
I
I
R
S
E
N
F
E
E
L
------
L
----------
K
V
L
G
-
V
N
V
---
M
L
R
K
I
A
V
A
A
A
S
K
--
P
A
V
E
I
K
Q
-----
E
G
D
T
F
----------
Y
I
K
V
S
-
T
T
V
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
54.91
28%
-21
- C10 -
-
3CWK
1
RABP2_HUMAN
A:
[7-59]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
I
I
R
S
E
N
F
E
E
L
------
L
----------
K
V
L
G
-
V
N
V
---
M
L
R
K
I
A
V
A
A
A
S
K
--
P
A
V
E
I
K
Q
-----
E
G
D
T
F
----------
Y
I
K
V
S
-
T
T
V
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
54.57
28%
-
- C10 -
-
3D95
-
RABP2_HUMAN
A:
[7-59]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
I
I
R
S
E
N
F
E
E
L
------
L
----------
K
V
L
G
-
V
N
V
---
M
L
R
K
I
A
V
A
A
A
S
K
--
P
A
V
E
I
K
Q
-----
E
G
D
T
F
----------
Y
I
K
V
S
-
T
T
V
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
52.77
29%
-34
- C10 -
-
4M6S
1
RABP2_HUMAN
A:
[7-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
I
I
R
S
E
N
F
E
E
L
------
L
----------
K
V
L
G
-
V
N
V
---
M
L
R
K
I
W
V
A
A
A
S
K
--
P
A
V
E
I
K
Q
-----
E
G
D
T
F
----------
Y
I
K
V
S
-
T
T
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
52.45
29%
-31
- C10 -
-
4I9S
1
RABP2_HUMAN
A:
[7-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
I
I
R
S
E
N
F
E
E
L
------
L
----------
K
V
L
G
-
V
N
V
---
M
L
R
K
I
A
V
A
A
A
S
K
--
P
A
V
E
I
K
Q
-----
E
G
D
T
F
----------
Y
I
K
V
S
-
T
T
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
51.63
29%
-26
- C10 -
-
4M7M
1
RABP2_HUMAN
A:
[7-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
I
I
R
S
E
N
F
E
E
L
------
L
----------
K
V
L
G
-
V
N
V
---
M
L
R
K
I
W
V
A
A
A
S
K
--
P
A
V
E
I
K
Q
-----
E
G
D
T
F
----------
Y
I
K
V
S
-
T
T
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
51.24
28%
-15
- C10 -
-
3FEK
-
RABP2_HUMAN
B:
[7-59]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
I
I
R
S
E
N
F
E
E
L
------
L
----------
K
V
L
G
-
V
N
V
---
M
L
R
K
I
A
V
A
A
A
S
K
--
P
A
V
EIK
Q
-----
E
G
D
T
F
----------
Y
I
K
V
S
-
T
T
V
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
51.22
13%
-101
- C8 -
-
5LQZ
-
?
W:
[11-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
W
T
------
K
I
-
V
S
K
L
G
L
S
G
Q
---------------
T
A
A
A
L
T
S
--
F
K
K
---
R
-----
N
D
E
A
K
R
I
-----
L
-
F
E
L
K
Q
Q
-
P
S
N
V
D
F
A
F
Y
K
S
-
T
L
K
N
T
A
I
V
D
K
I
Q
S
D
V
S
-----
K
F
T
-
P
S
K
A
N
L
S
-
K
Q
L
N
L
I
E
----
S
F
E
A
--
K
A
L
E
N
-
A
K
E
T
E
S
V
V
L
A
--------------------
E
L
T
D
L
-----
E
-
K
T
L
E
N
-
I
-
E
S---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
50.81
21%
52
- C4 -
-
2VQZ
1
PB2_I75A3
A:
[3-165]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
S
S
F
S
F
GG
F
T
F
K
R
T
S
G
S
S
I
K
R
E
E
E
------
V
L
-
T
G
N
L
Q
----
T
L
K
-
I
R
V
---
H
E
G
Y
--------------------------
E
E
F
-----
T
M
V
G
K
R
A
T
-
A
I
L
R
K
A
T
R
R
L
V
-
Q
L
I
V
S
G
K
D
E
Q
S
I
A
E
A
I
-----
I
V
A
M
V
F
S
Q
E
D
C
M
I
K
A
V
R
G
D
L
N
F
V
N
R
A
N
--
Q
R
L
N
P
M
H
Q
L
L
R
H
F
Q
K
D
A
K
V
L
F
Q
N
W
G
I
E
H
I
D
NVMG
M
V
G
V
L
P
------
D
M
T
P
S
T
E
M
S
M
R
G
I
R
V
S
K----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
49.32
29%
-13
- C10 -
-
4I9R
1
RABP2_HUMAN
A:
[7-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
I
I
R
S
E
N
F
E
E
L
------
L
----------
K
V
L
G
-
V
N
V
---
M
L
R
K
I
W
V
A
A
A
S
K
--
P
A
V
E
I
K
Q
-----
E
G
D
T
F
----------
Y
I
K
V
S
-
T
T
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
49.02
19%
7
- C5 -
-
2KPY
-
ALL1_ARTVU
A:
[1-108]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
-
S
K
L
C
E
K
T
S
K
T
Y
S
-
G
K
C
---
D
N
K
K
C
D
K
K
C
I
E
W
--
E
K
A
---
Q
-----
H
G
A
C
H
K
R
-----
E
-
A
G
K
E
S
C
-
F
C
Y
F
D
C
S
K
---------
S
P
P
G
A
T
P
A
P
P
G
-----
A
A
P
-
P
P
A
A
G
G
S
-
P
S
P
P
A
D
G
----
G
S
P
P
--
P
---
P
-
A
D
G
G
S
P
P
V
D
G
--------------------
G
S
P
P
P
----------
P
S
-
T
-
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
47.89
13%
84
* C5 *
-
5LPI
-
CE104_HUMAN
A:
[6-134]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EHYLDNL
C
I
F
C
G
E
R
S
E
E
F
T
E
E
------
G
L
-
D
L
H
Y
W
K
H
C
L
M
L
T
R
C
D
H
---
C
K
Q
V
V
E
I
S
S
L
T
E
--
H
L
L
---
T
-----
E
C
D
K
K
D
G
-----
F
-
G
K
C
Y
------------------
R
C
S
E
A
V
F
K
E
E
L
P
R
-----
H
I
K
-
H
K
D
C
N
P
A
-
K
P
E
K
L
A
N
----
R
C
P
L
--
C
H
E
N
F
-
S
P
G
E
E
A
W
K
A
H
--------------------
L
M
G
P
A
-----
G
-
C
T
M
N
L
-
R
-
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
44.82
54%
-43
- C10 -
-
4B8V
1
?
A:
[45-57]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
---
V
-----
K
G
D
T
L
T
S
-----
I
-
A
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
44.44
20%
25
* C6 *
-
2W8X
1
?
A:
[1-72]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
N
-
C
N
K
---
R
E
G
P
C
S
Q
R
S
L
C
E
CD
P
N
L
---
Q
-----
L
G
R
H
S
D
Q
-----
L
-
W
H
Y
N
L
R
-
T
N
-
R
C
E
R
G
G
Y
R
-
D
N
C
N
S
H
S
S
S
G
A
C
V
M
A
C
-----
E
R
I
-
H
H
H
H
H
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
42.78
11%
25
- C6 -
-
2KQ2
-
?
A:
[1-147]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDDR
T
E
Y
D
V
Y
T
D
G
S
Y
V
N
G
Q
Y
A
W
A
Y
A
F
-
V
K
D
G
K
V
H
Y
E
D
A
D
-
V
G
K
---
N
P
A
A
A
T
M
R
N
V
A
G
--
E
I
A
---
A
-----
A
L
Y
A
V
K
K
-----
A
-
S
Q
L
G
V
K
-
I
R
I
L
H
D
Y
A
G
I
A
-
F
W
A
T
-
G
E
W
K
A
K
N
E
F
T
Q
-----
A
Y
A
-
K
L
M
N
Q
Y
R
-
G
I
Y
S
F
E
K
----
V
K
A
H
--
S
G
N
E
F
-
N
D
Y
V
D
M
K
A
K
S
--------------------
A
L
G
I
R
-----
D
-
L
E
H
H
H
-
H
-
H
H---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
42.24
41%
-50
- C10 -
-
5C8Q
3
?
B:
[59-75]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
--
V
T
V
---
Q
-----
Q
G
D
T
L
R
D
-----
I
-
G
R
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
41.57
37%
9
- C7 -
-
3Q9P
-
HSPB1_HUMAN
A:
[143-171]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
P
--
P
G
V
D
P
-
T
Q
V
S
S
S
L
S
P
E
--------------------
G
T
L
T
V
-----
E
-
A
P
M
P
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------