@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TYQ1: (2017-12-15 )
MTYVRVGKKWNYACFILDLFNREILGYSCGEHKDAVLVKKHLAVSNNL
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10-----..--------.......-20......----..30--........---40....--...-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
T
Y
V
R
VGKKW------
N
Y
--------
A
C
F
I
L
D
L
-FNREILGY----SCGE--HK
D
A
V
L
V
K
---
K
H
LAVS--NNL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
73.43
40%
-272
- C5 -
-
5XUN
1
?
A:
[10-36]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
D
A
-
F
S
Y
D
I
T
G
F
----
D
C
G
E
--
E
A
L
N
T
F
L
K
---
E
H
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
54.96
20%
-85
- C6 -
-
2DST
-
?
A:
[2-123]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R
R
A
G
Y
L
HLYG
L
N
L
V
F
D
R
V
G
K
G
P
P
V
L
L
V
A
E
E
A
S
R
W
P
E
A
L
P
E
G
Y
--------
A
F
Y
L
L
D
L
-
P
G
Y
G
R
T
E
G
----
P
R
M
A
--
P
E
E
L
A
H
F
V
---
A
G
F
A
V
M
--
M
N
L
G
A
P
W
V
L
L
R
G
L
G
L
A
L
G
P
H
L
E
A
L
G
L
R
A
L
P
AEGVE
V
A
E
V
L
S
S
K
L
S
YG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
49.90
22%
-15
- C6 -
-
2JVE
-
?
A:
[18-88]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
A
L
K
C
F
T
R
N
G
D
D
R
------
T
V
T
T
C
A
EEQT
R
C
L
F
V
Q
L
-
P
Y
S
E
I
Q
E
C
K
T
V
Q
Q
C
A
E
--
V
L
E
E
V
T
A
I
---
G
Y
P
A
K
C
C
C
E
D
L
CNRSEQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
45.58
20%
-
- C- -
-
4FW1
-
POL_RSVP
A:
[72-114]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
R
------
S
W
--------
L
A
V
T
V
D
T
-
A
S
S
A
I
V
V
T
----
Q
H
G
R
---
V
T
S
V
A
V
Q
---
H
H
W
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
45.58
20%
-
- C- -
-
4FW1
-
B:
[72-106]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
R
------
S
W
--------
L
A
V
T
V
D
T
-
A
S
S
A
I
V
V
T
----
Q
H
G
R
---
V
T
S
V
A
V
Q
---
H
H
W
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
45.53
25%
-5
- C6 -
-
5F7C
-
?
A:
[12-723]
LFDFDTELLRD
E
S
L
W
K
A
C
KPT
A
V
Y
E
K
DGD
I
C
V
T
V
P
F
Q
K
Q
L
LAND
M
V
A
D
TA
V
P
R
E
E
Y
T
L
I
I
R
Q
Y
NIG
I
T
R
L
F
L
GFGEYEILFTQDGTKRAVINVEEPALDRWSELLPDP
Q
E
T
L
D
I
T
L
Y
PDGK
R
E
I
R
L
AAYDHFSPPRYDGLP
I
A
F
C
K
R
TGKKER
A
T
L
S
F
E
S
R
PD
E
C
F
A
G
TGERFFKMDLSGQTLFLKNQDGQGVNNRRTYKNIP
F
Y
L
S
SR
M
Y
G
T
F
YHTC
A
H
S
K
L
S
LAGHSTRSV
Q
F
L
S
DQA
M
L
D
A
F
V
I
A
G
DT
M
E
E
I
L
R
G
Y
R
D
L
T
G
Y
P
S
M
PPLWSF
G
V
W
M
S
R
MTYFS
A
D
E
V
N
E
I
C
D
R
M
R
A
E
HYPCD
V
I
H
L
D
TGWFRTDWLCEWKFNEERFPA
G
T
I
D
F
T
Y
P
K
A
T
E
W
Y
------
K
G
--------
L
L
K
Q
L
L
D
-
M
G
V
T
C
I
K
T
----
D
F
G
E
NI
H
M
D
A
V
Y
K
G
---
M
K
P
E
L
L
--
N
N
L
Y
A
L
L
Y
Q
K
A
A
Y
E
I
T
K
E
V
TGDGIVWARAAWAGCQRYP
L
H
W
GGDSCSS
W
D
G
M
A
G
S
L
K
G
G
L
H
F
G
L
S
GFA
F
W
S
H
D
V
PGFHTLPNFMNSIVA
E
D
V
Y
M
R
W
T
Q
F
G
V
F
TS
H
I
R
Y
H
GTNKREPWHYPAI
A
P
L
V
K
K
W
W
K
L
R
Y
S
L
I
P
Y
I
I
E
Q
S
K
L
A
V
E
S
GWPLLQALILHHPED
K
L
C
W
H
IDDEYYFGND
F
L
V
A
P
V
MNSEN
R
R
D
I
Y
L
P
EGQWVNFFTGERLQGGRWLKE
V
Y
V
P
LEE
M
P
V
Y
V
R
E
N
A
V
I
P
I
YPEEV
22
Fugue
45.45
21%
69
* C5 *
-
2L92
-
BV3F_BURVG
A:
[71-114]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MS
T
V
P
K
Y
R
D
P
A
T
G
K
T
W
------
S
------------------
G
R
G
R
Q
P
A
----
W
L
G
N
--
D
P
A
A
F
L
I
Q
---
P
D
L
P
A
I
--
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
41.52
30%
25
- C6 -
-
5TZJ
1
?
A:
[1-349]
----------------------------------------------------------------------------------------------------------------------------MK
F
S
V
I
V
P
T
Y
NSEKY
I
T
E
L
L
N
S
L
A
K
QDFPKTE
F
E
V
V
V
V
D
DCSTDQ
T
L
Q
I
V
E
K
Y
R
NKLN
L
K
V
S
Q
L
ETNSGGP
G
K
P
R
N
V
A
L
K
Q
AEGE
F
V
L
F
V
D
SD
D
Y
I
N
KE
T
L
K
D
A
A
A
F
I
D
E
HHSD
V
L
L
I
K
M
K
G
V
NG
R
G
V
P
Q
SMFKETAPEVTLLNSRIIYTLSPTKIYR
T
A
L
L
K
D
N
DIYFPEELKSA
E
D
Q
L
F
T
M
K
A
Y
L
N
AN
R
I
S
V
L
SDKAY
Y
Y
A
T
K
R
E
G
EH
M
S
S
A
Y
V
S
P
E
D
------
F
Y
--------
E
--
V
M
R
L
-
I
A
V
E
I
L
N
A
----
D
L
E
E
A
-
H
K
D
Q
I
L
A
E
F
L
N
R
H
F
S
F
S
--
R
T
N
GFSLKVKLEE
Q
P
Q
W
I
N
A
L
G
D
F
I
Q
A
VPERVDALVMSKL
R
P
L
L
H
Y
A
R
A
KD
I
D
N
Y
R
T
V
E
E
S
Y
R
Q
GQYY
R
F
D
I
V
DGKLNIQFNEG
E
P
Y
F
E
GID--------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
41.14
32%
74
- C2 -
-
1IWF
-
ATP4A_PIG
A:
[1-34]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
K
A
E
------
N
Y
-------------
E
L
-
Y
Q
V
E
-
L
G
P
----
G
P
S
G
--
D
M
A
A
K
M
S
K
---
K
K
A
G
R
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
40.48
5%
-255
- C5 -
-
3WNF
-
POL_HV1N5
A:
[14-55]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
------
K
V
--------
I
L
V
A
V
H
V
-
A
S
G
Y
I
E
A
E
----
V
I
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
40.25
22%
-43
* C6 *
-
3A1Q
-
UIMC1_MOUSE
C:
[76-120]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
P
L
G
S
E
E
------
E
Q
--------
F
A
L
A
L
K
M
-
S
E
Q
E
A
R
E
V
----
N
N
Q
E
--
E
K
E
E
E
L
L
R
---
K
A
I
A
E
S
--
L
N
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
40.12
18%
-103
- C5 -
-
1BCO
-
TNPA_BPMU
A:
[285-330]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
------
P
K
--------
T
W
F
W
Q
D
V
-
K
T
R
K
I
L
G
W
----
R
C
D
V
--
S
E
N
I
D
S
I
R
---
L
S
F
M
D
V
--
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
39.75
9%
-193
- C5 -
-
4PA1
-
A:
[70-104]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
G
------
K
I
--------
I
L
V
G
I
H
V
-
E
S
G
Y
I
W
A
Q
----
I
I
S
---
Q
E
T
A
D
C
T
V
---
K
A
V
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
38.11
5%
-255
- C5 -
-
3VQ6
-
?
A:
[15-43]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
------
K
V
--------
I
L
V
A
V
H
V
-
A
S
G
Y
I
E
A
E
----
V
I
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
37.77
14%
-221
- C5 -
-
2X78
-
POL_FOAMV
B:
[137-169]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
Y
------
L
Y
--------
V
L
V
V
V
D
G
-
M
T
G
F
T
W
L
Y
----
P
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
37.54
6%
-169
- C5 -
-
1EXQ
-
?
B:
[14-56]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
------
K
V
--------
I
L
V
A
V
H
V
-
A
S
G
Y
I
E
A
E
----
V
I
P
---
A
E
T
G
Q
E
T
A
---
Y
F
L
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
36.73
13%
-4
- C4 -
-
1R1F
-
PALIC_PALCO
A:
[1-37]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
F
C
------
G
E
--------
T
C
R
V
I
P
V
C
T
Y
S
A
A
L
G
C
----
T
C
D
D
--
R
S
D
G
L
C
K
R
--------
N
--
G
D
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
36.35
13%
-113
- C5 -
-
1CXQ
2
A:
[26-52]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
R
------
S
W
--------
L
A
V
T
V
D
T
-
A
S
S
A
I
V
V
T
----
Q
H
G
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
36.13
6%
-168
- C5 -
-
1EXQ
-
A:
[14-54]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
------
K
V
--------
I
L
V
A
V
H
V
-
A
S
G
Y
I
E
A
E
----
V
I
P
---
A
E
T
G
Q
E
T
A
---
Y
F
L
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
35.98
9%
-192
- C5 -
-
3KKR
-
A:
[12-46]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
N
K
------
T
I
--------
I
W
V
A
V
E
T
-
N
S
G
L
V
E
A
Q
----
V
I
P
E
---
E
T
A
L
Q
V
A
---
L
C
I
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------