@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3U212: (2017-12-21 )
MKNMYYPYLRGKQFDLLALKEALSRGLLSNKIQPVIEPVRDSATLKNVIELFQKKHHPIAVIQNPQVGQFKLFDQHVHSWTVKENSSVVPAQILTPENLSEVLDSPPAFLVFDGQHYPKDTEVWKQLAGVDSKFLIPDTSRFRIWLPENKIVIRDSFQTRKHVESYADKTDDFFSDDYLFFHADGYIGFSDFTIEGSRYFDKGFPSRALAIHLTYIDAYGNIRVKHFVSDSNDSAKDQALKFLEAGDKMKKWIMRHHHQLLITSGMIELLALYQQQKFPGLGVLKKWSLMHHLELISHLLDHPKDWLKYYSKVQELYEVIQ
Atome Classification :
(20 SA)
-------------------------------------------------------.........10........20.....---------...30........----------40........50........60........70........80..-----......90........100--------....----....110.......120...--------....130.....----..140.-....----.---------------.150.......-----------160-.......---..170----------......--------------------------..180------.....-------..--..190...---....200.......210---.......220------.--.....-------...230.........240...---------....250------.....----..260....-----..-----------..------270.......280---.........290.---...-...300....--------...310.......320------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------MKNMYYPYLRGK
Q
F
D
L
L
A
L
K
E
A
L
S
R
G
---------
L
L
SNK
I
Q
P
V
I
E
PV----------RD
S
A
T
L
K
N
V
I
E
L
F
QKKHH
P
I
A
V
I
QNPQVG
Q
F
K
L
F
D
QHV
H
S
W
T
VK-----ENSSVV
P
A
Q
IL
T
P
E
N
L
S
E
---------
V
LDS----PP
A
F
L
V
FDGQHYP
K
D
T
E
V
W
K
--------
Q
L
AGVD
S
K
F
LIP----DTS
R
F
R
-
I
W
LP----E---------------N
K
I
V
I
RDS
F
Q
T
-----------
R
---
K
H
V
E
S
Y
A---DKTD-----------DFFSD
D
--------------------------
Y
L
F
--------
F
HADG-------YI--G
F
S
D
F
T
IE---GSRYFDKGFPS
R
A
L
A
I
H
---
L
T
Y
I
DAYG--------N--
I
R
V
K
H
-------
F
VSD--SND
S
A
K
D
Q
A
L
K
F
L
EA---------
G
D
K
M
K
K
W
------
I
M
R
H
H
----
H
Q
L
L
-
I
T
S
G
-----
M
I
-----------
E
L
------
L
A
L
Y
Q
QQKFPG-----
L
G
V
L
K
K
W
S
L
M
H
H
L
---
E
L
I
-
S
H
L
L
DH
P
K
D
W
--------
L
K
Y
Y
S
K
V
Q
E
L
Y
E
VIQ-------------------------
22
Fugue
63.00
23%
38
- C2 -
-
4MR0
1
PFBA_STRR6
A:
[114-571]
----------------------------------------------------TAL
S
V
K
D
Y
G
A
V
G
D
G
I
H
D
D
R
Q
A
I
Q
D
A
I
D
A
A
A
Q
GLGGG
N
V
Y
F
P
E
G
T
Y
L
V
K
E
I
V
F
L
K
S
H
T
H
L
E
L
N
E
K
A
T
I
L
N
G
I
N
I
---
K
N
H
P
S
I
V
F
M
---
T
G
L
F
T
D
D
G
A
Q
V
-
E
W
G
P
T
-----
E
D
I
S
Y
S
G
G
T
I
D
M
N
G
A
L
N
E
EGTKAKNLP
L
I
N
S
----
S
G
A
F
A
I
G
N
S
N
N
V
T
I
K
N
V
T
F
K
DSYQGHA
I
Q
I
A
G
--
S
K
N
V
L
V
----
D
N
S
R
F
L
G
Q
A
L
P
KTMK
D
---------------
G
Q
I
I
S
K
E
S
I
Q
I
-----------
E
P
LT
R
K
G
F
P
Y
A
---
L
N
D
D
G
K
K
S
E
NVTIQN
S
Y
F
G
K
S
DKSGELVTA
I
G
T
H
Y
QTLSTQNPSN
I
K
I
L
N
--------
N
H
F
D
N
MMYAG
V
R
F
T
--
G
F
T
D
V
L
I
K
---
G
N
R
-
F
D
K
K
V
K
G
E
S
V
H
Y
R
ESG
A
A
L
V
N
A
Y
S
YKNTKDLL
D
--
L
N
K
Q
V
-------
V
I
A
E
--
N
I
F
N
I
A
D
P
K
T
K
A
I
R
V
---------
A
K
D
S
A
E
Y
LGKVSD
I
T
V
T
K
----
N
V
I
N
-
N
N
S
K
ETEQP
N
I
-----------
E
L
L
RVSDN
L
V
V
S
E
N
S
I
F
G
G
-----
K
E
G
I
V
I
E
D
S
K
G
K
I
---
T
V
L
N
N
Q
F
Y
N
L
S
G
K
Y
--------
I
S
F
I
K
S
N
A
N
G
K
E
P
V
I
SD
G
N
F
N
I
V
T
E
NG
L
Y
K
I
V
T
N
NLSDKN
21
Fugue
46.79
16%
43
* C3 *
-
4OPU
3
?
A:
[2-453]
M
K
E
L
K
Y
D
V
L
I
I
G
GG
F
A
G
S
S
A
A
Y
Q
L
SRRG
L
K
I
L
L
V
D
SKPWNRIGDKPCGDAVS
K
A
H
F
D
K
L
G
M
P
Y
P
K
G
E
E
L
E
N
K
I
N
G
I
K
L
Y
S
P
---------
D
M
Q
T
V
W
T
V
N
H
E
G
F
----------
E
L
N
A
P
L
Y
N
Q
R
V
L
K
E
A
Q
D
R
G
V
E
I
W
D
L
T
T
A
M
K
P
I
F
E
D
G
Y
V
K
G
A
V
L
F
NRRTN
E
E
L
T
V
Y
S
K
V
V
V
E
A
T
G
Y
S
R
---------
S
F
R
S
KL--
P
P
E
L
P
I
T
E
D
L
D
D
K
D
A
D
V
A
Y
R
--------
E
V
L
L
T
K
E
D
--
I
E
----
D
H
D
Y
L
R
-
I
F
I
D
----
Q
ETSPG
G
Y
W
W
Y
F
P
KGK
N
K
V
N
V
G
L
G
I
Q
G
GMGYPS
I
H
E
Y
Y
K
---
K
Y
L
D
K
Y
A
PDV
D
K
S
K
-----------
L
L
V
K
G
G
--------------------------
A
L
V
P
TRRPLYT
M
A
W
N
G
-------
I
I
V
I
G
D
S
G
F
T
V
N
PVH
G
G
G
K
G
S
A
M
I
S
G
Y
C
A
A
K
A
---
I
L
S
A
F
E
T
G
--------
D
--
F
S
A
S
G
LW
D
M
N
I
C
Y
V
N
E
Y
G
A
K
Q
A
S
L
D
I
F
R
R
F
L
Q
K
L--------
S
N
D
D
I
N
Y
------
G
M
K
K
K
IIK
E
E
D
L
L
-
E
A
S
E
-----
K
G
-----------
D
L
------
H
L
S
V
A
D
K
A
M
R
V
-----
I
S
G
L
G
R
P
S
L
L
F
K
L
---
K
A
V
-
A
E
S
M
K
K
I
K
E
L
--------
Y
L
N
Y
P
R
S
P
S
S
L
G
S
W
R
R
E
V
D
N
V
L
T
E
F
N
K
S
L
S----------
17
Fugue
43.50
12%
-19
- C2 -
-
1FUI
2
FUCI_ECOLI
A:
[1-355]
-------------------------------------------------------
M
K
K
I
S
L
P
-----
K
I
G
I
R
P
V
I
D
G
-
R
R
M
---------
G
V
R
E
S
L
E
E
Q
T
M
N
M
----------
A
K
A
T
A
A
L
L
T
E
K
L
R
H
A
C
G
A
A
V
E
C
V
I
S
D
T
C
I
A
G
M
A
E
A
A
A
C
E
E
K
F
S
S
-----
Q
N
V
G
L
T
I
T
V
T
P
C
W
C
Y
G
S
E
---------
T
I
D
M
DPT
R
P
K
A
I
W
G
F
N
G
T
E
R
P
----
G
A
V
--------
Y
L
A
A
A
L
A
A
H
S
Q
K
----
G
I
P
A
F
S
-
I
Y
-
G
----
H
---------------
D
V
Q
D
A
D
D
T
S
I
P
-----------
A
---
D
V
E
E
K
L
L
---
R
F
A
R
-----------
A
G
L
A
V
A
--------------------------
S
M
K
--------
G
K
S
Y
L
-------
S
L
--
G
G
V
S
M
G
I
A
---
G
S
I
V
-
D
H
N
F
F
E
S
W
L
G
M
K
---
V
Q
A
V
D
M
T
E
--------
L
--
R
R
R
I
D
-------
Q
-
K
I
--
Y
D
E
A
E
L
E
M
A
L
A
W
A
D
K
N
F
R
Y
G
E
DEN
N
K
Q
Y
Q
R
N
------
A
E
Q
S
R
----
A
V
L
R
-
E
S
L
L
-----
M
A
M
C
I
R
D
M
M
QGN
S
K
L
------
A
D
I
G
R
V
E
E
S
L
G
YNAI
A
A
G
F
Q
G
Q
R
H
W
T
D
Q
Y
PNG
D
T
A
-
E
A
I
L
N
S
S
F
D
W
NGVRE
P
F
V
V
A
T
E
N
D
S
L
N
G
V
A
M
L
M
G
H
Q
L
TG
T
------------------
4
PsiBlast_PDB
35.96
39%
-169
* C4 *
-
3WQ6
1
?
A:
[166-203]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
Y
G
--------
G
--
F
L
S
P
H
-------
I
V
N
D
--
F
R
D
F
A
E
---
L
C
F
K
E
F
---------
G
D
R
V
K
H
W
------
I
T
M
N
E
-------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
35.63
39%
-168
- C4 -
-
3WQ4
-
?
A:
[166-203]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
Y
G
--------
G
--
F
L
S
P
H
-------
I
V
N
D
--
F
R
D
F
A
E
---
L
C
F
K
E
F
---------
G
D
R
V
K
H
W
------
I
T
M
N
E
-------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
35.46
39%
-165
- C4 -
-
3WQ5
1
?
A:
[166-203]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
Y
G
--------
G
--
F
L
S
P
H
-------
I
V
N
D
--
F
R
D
F
A
E
---
L
C
F
K
E
F
---------
G
D
R
V
K
H
W
------
I
T
M
N
E
-------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
35.23
16%
-33
- C3 -
-
2NAS
-
?
A:
[1-110]
----------------------------------------------------------------------------------------------------------------------------------------------
M
I
P
S
F
A
P
G
T
L
V
W
L
K
Q
-----
D
R
F
P
W
W
P
G
F
V
M
D
P
D
E
V
R
D
---------
I
-----------------
T
L
P
E
G
S
D
V
W
V
--------
C
C
L
P
R
D
S
L
T
L
S
A
A
N
SE
D
E
G
Q
I
R
-
Y
F
L
P
----
D
---------------
R
D
E
G
M
M
E
E
G
K
L
-----------
D
---
A
S
C
A
V
A
I
---
E
E
A
I
-----------
Q
L
Y
E
E
Q
---------------------------
L
K
--------
A
Q
A
G
G
-------
T
N
--
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
30.79
21%
-71
- C4 -
-
2RRF
-
ZFY21_HUMAN
A:
[65-133]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
Q
I
L
---
T
E
G
F
P
P
G
G
G
N
A
R
A
T
G
M
F
---
L
Q
Y
T
V
P
G
T
--------
E
G
V
T
Q
L
K
L
-------
T
V
V
E
--
D
V
T
V
G
R
R
Q
A
V
A
W
L
V
A
---------
M
H
K
A
A
K
L
------
L
Y
E
S
R
-------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
26.27
31%
-
- C5 -
-
3QRH
-
ALF_ENCCU
A:
[175-187]
--------------------------------------------------------------------------------------------
K
N
G
L
V
P
I
V
E
P
E
----------
V
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
25.86
38%
-
- C5 -
-
1ALD
-
ALDOA_HUMAN
A:
[179-191]
--------------------------------------------------------------------------------------------
Q
N
G
I
V
P
I
V
E
P
E
----------
I
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
25.82
31%
-
- C5 -
-
3MBF
1
ALF_ENCCU
A:
[175-187]
--------------------------------------------------------------------------------------------
K
N
G
L
V
P
I
V
E
P
E
----------
V
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
23.76
38%
-
* C5 *
-
1FBA
-
ALF_DROME
B:
[179-191]
--------------------------------------------------------------------------------------------
S
Q
R
I
V
P
I
V
E
P
E
----------
V
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
23.37
31%
-
- C5 -
-
2PC4
-
ALF_PLAFA
C:
[187-199]
--------------------------------------------------------------------------------------------
Q
N
R
L
V
P
I
V
E
P
E
----------
I
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
23.04
38%
-
- C5 -
-
2IQT
-
ALF1_PORGI
A:
[168-180]
--------------------------------------------------------------------------------------------
S
H
G
L
V
P
I
L
E
P
E
----------
V
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
21.36
23%
-
- C5 -
-
3MMT
1
?
D:
[174-186]
--------------------------------------------------------------------------------------------
E
A
G
L
V
P
I
V
E
P
E
----------
V
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
20.27
24%
0
- C- -
-
3IF8
-
ZWILC_HUMAN
A:
[179-253]
-------------------------------------------------------------------------------------------------------------------
S
V
N
L
E
N
L
K
N
L
H
K
K
R
H
H
-
L
S
T
V
T
S
K
G
F
A
Q
Y
E
L
F
K
S
---------------
Q
T
A
I
A
L
D
I
-
S
W
S
P
V
D
E
---------
I
L
Q
I
----
P
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
18.10
32%
-33
- C4 -
-
2HWJ
-
?
A:
[57-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
---------
G
P
K
D
R
A
Y
------
L
I
D
H
H
----
H
L
V
L
A
L
S
K
E
-----
G
V
-----------
E
H
------
V
L
T
S
E
V
A
K
F
S
H
-----
L
G
K
D
E
F
W
S
V
M
D
H
R
---
N
L
I
-----------------------------------------------------------
5
PsiBlast_PDB
16.95
35%
-24
- C1 -
-
5A8I
2
?
A:
[124-163]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
P
----
S
V
S
M
G
R
-
S
--
P
----
E
---------------
N
I
V
I
V
P
D
S
E
V
S
-----------
R
---
K
H
A
V
I
Y
L
---
D
N
S
E
-----------
L
Y
I
E
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
16.28
40%
26
* C2 *
-
2HZS
-
MED8_YEAST
I:
[6-27]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
F
N
V
D
D
V
L
K
F
T
F
T
---------
G
E
K
H
H
----------
H
H
H
----
H
--------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
14.02
20%
-
- C4 -
-
2K76
-
?
A:
[13-27]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
D
L
--------
I
R
F
Y
N
D
L
Q
Q
Y
L
-----------------------------