@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : C9JAB9_HUMAN: (2017-06-01 )
WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCIGQRKFSTMEELVEHY

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_L_3(2CI9)
NCK1_HUMAN
[Raw transfer]
-
CHAIN_M_4(2CI9)

[Raw transfer]
-
CHAIN_L_2(2CIA)

[Raw transfer]
-
CHAIN_L_2(2CIA)

[Raw transfer]
-
CHAIN_B_2(3WA4)
GRB2_HUMAN
[Raw transfer]
-
CHAIN_E_5(1R1P)
GRAP2_MOUSE
[Raw transfer]
-
CHAIN_B_2(3OV1)
GRB2_HUMAN
[Raw transfer]
-
21 PsiBlast_CBE 89.85100% -84 - C2 -2CI9 7.7
2 PsiBlast_PDB 89.64100% -89 - C2 -2CI9 7.6 NCK1_HUMAN
260 HHSearch 84.7585% -98 - C2 -2CIA 7.9
4 PsiBlast_PDB 84.7585% -98 - C2 -2CIA 7.9
1 PsiBlast_PDB 73.73100% -15 - C2 -2CI8 Calc...
110 PsiBlast_CBE 72.5134%-145 - C2 -4K45 - PLCG1_RAT -
35 PsiBlast_CBE 68.4142% -44 - C2 -3C7I - GRB2_HUMAN -
3 PsiBlast_PDB 68.2985% -58 - C2 -1Z3K Calc...
20 PsiBlast_PDB 67.6742% -44 - C2 -3S8O - GRB2_HUMAN -
261 HHSearch 67.6643% -62 - C2 -3WA4 7.3 GRB2_HUMAN
18 PsiBlast_PDB 67.6242% -48 - C2 -3S8L - GRB2_HUMAN -
37 PsiBlast_CBE 67.5842% -44 - C2 -2HUW - GRB2_HUMAN -
24 PsiBlast_CBE 67.4442% -50 - C2 -4P9V - GRB2_HUMAN -
102 PsiBlast_CBE 67.4039% -70 - C2 -4GWF - PTN11_HUMAN -
36 PsiBlast_CBE 67.1342% -42 - C2 -2HUW - GRB2_HUMAN -
25 PsiBlast_CBE 67.0842% -48 - C2 -3OVE - GRB2_HUMAN -
53 PsiBlast_CBE 67.0042% -35 - C2 -1CJ1 - GRB2_HUMAN -
51 PsiBlast_CBE 67.0042% -35 - C2 -1CJ1 - GRB2_HUMAN -
12 PsiBlast_PDB 67.0042% -58 - C2 -3IMJ - GRB2_HUMAN -
22 PsiBlast_CBE 66.9142% -50 - C2 -1JYQ - GRB2_HUMAN -
274 HHSearch 66.4643% -65 * C2 *3OV1 7.0 GRB2_HUMAN
273 HHSearch 60.6539% -76 - C2 -1R1P 6.5 GRAP2_MOUSE