@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VND4: (2017-11-13 )
MAKQSAGQLFRDAVAQEKPLQVVGTINANHALLAKRAGYKAIYLSGGGVAAGSLGLPDLGISNLDDVLTDVRRITDVCDLPLLVDADTGFGASAFNIARTTKALIKFGAAAMHIEDQVGAKRCGHRPNKAIVTQEEMVDRIKAAVDARGDDSFVIMARTDALAVEGLQAAIDRAGAYIEAGADMLFPEAITELDMYKQFAQKTGVPILANITEFGSTPLFTTEELASADVSLALYPLSAFRAMNKAAETVYETLRKEGTQKNVVDIMQTRKELYERINYYAFEDYLDNAFAKKK

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ICT_D_10(1XG4)
PRPB_ECOLI
[Raw transfer]




ICT_B_9(1XG4)
PRPB_ECOLI
[Raw transfer]




ICT_B_9(1XG4)
PRPB_ECOLI
[Raw transfer]




ICT_A_8(1XG4)
PRPB_ECOLI
[Raw transfer]




OAF_A_2(3M0J)
?
[Raw transfer]




SIN_B_12(1XG3)
PRPB_ECOLI
[Raw transfer]




SIN_D_15(1XG3)
PRPB_ECOLI
[Raw transfer]




SIN_A_10(1XG3)
PRPB_ECOLI
[Raw transfer]




PYR_D_12(1O5Q)
PRPB_SALTY
[Raw transfer]




PYR_B_10(1O5Q)
PRPB_SALTY
[Raw transfer]




PYR_A_9(1O5Q)
PRPB_SALTY
[Raw transfer]




PYR_C_13(1XG3)
PRPB_ECOLI
[Raw transfer]




PYR_C_11(1O5Q)
PRPB_SALTY
[Raw transfer]




PYR_A_3(4IQD)
?
[Raw transfer]




PYR_A_3(4IQD)
?
[Raw transfer]




GAQ_B_6(1ZLP)
PDP_DIACA
[Raw transfer]




GAQ_B_6(1ZLP)
PDP_DIACA
[Raw transfer]




GAQ_A_5(1ZLP)
PDP_DIACA
[Raw transfer]




90 HHSearch 97.4777%-114 - C5 -1OQF - PRPB_ECOLI -
4 PsiBlast_PDB 97.1277%-115 - C5 -1OQF - PRPB_ECOLI -
3 PsiBlast_PDB 96.3577%-116 - C5 -1MUM - PRPB_ECOLI -
29 PsiBlast_CBE 96.1176%-115 - C5 -1XG3 4.3 PRPB_ECOLI
26 PsiBlast_CBE 95.2076%-114 - C5 -1XG4 - PRPB_ECOLI -
6 PsiBlast_PDB 94.2976%-104 - C5 -1XG4 3.8 PRPB_ECOLI
91 HHSearch 93.7477%-104 * C5 *1XG4 3.8 PRPB_ECOLI
27 PsiBlast_CBE 93.4876%-105 - C5 -1XG4 3.8 PRPB_ECOLI
30 PsiBlast_CBE 93.2476%-105 - C5 -1XG3 2.8 PRPB_ECOLI
5 PsiBlast_PDB 93.2076%-102 - C5 -1XG3 2.1 PRPB_ECOLI
22 PsiBlast_CBE 93.0778%-130 - C5 -1O5Q 2.9 PRPB_SALTY
23 PsiBlast_CBE 92.9978%-129 - C5 -1O5Q 4.2 PRPB_SALTY
25 PsiBlast_CBE 92.7376%-104 - C5 -1XG4 3.7 PRPB_ECOLI
28 PsiBlast_CBE 92.4976%-102 - C5 -1XG3 3.8 PRPB_ECOLI
2 PsiBlast_PDB 92.1478%-132 - C5 -1O5Q 2.9 PRPB_SALTY
1 PsiBlast_PDB 92.1278%-130 - C- -1UJQ - PRPB_SALTY -
21 PsiBlast_CBE 91.7778%-129 - C5 -1O5Q 2.9 PRPB_SALTY
92 HHSearch 91.5063%-119 - C5 -3EOO - ? -
7 PsiBlast_PDB 91.3063%-120 - C5 -3EOO - ? -
93 HHSearch 91.1463%-117 - C5 -3EOO - ? -
100 HHSearch 77.9943%-113 - C5 -4IQD 3.4 ?
8 PsiBlast_PDB 77.8144%-121 - C5 -4IQD 3.4 ?
98 HHSearch 64.9535% -54 - C5 -1ZLP 1.9 PDP_DIACA