@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VRL9: (2017-12-03 )
MTDQYQAFTQSPIGKFVVKNLGLPSPVVLERFESAQPVVKGAVLVGAAPSSVLSGAIAQVLSNIHADSYVGNNVALQQEAAKVGLNLRPFNAGDKESKFKAVVFDASGIQNSEQLNELYKFFNPIARQVATSGRVIVIGTTPETAKTIKQAIAQRALEGFIKSVGKEFKKGITAQVVYVDEGAAANLESTLRFLLSPRSAYVSGQVIRVSKADVVDVDWAKPLAGKTALVTGASRGIGEAIAHVLARDGAHVICLDVPQQQADLDRVAADIGGSTLAIDITAADAGEKIKAAAAKQGGLDIIVHNAGITRDKTLANMKPELWDLVININLSAAERINDYLLENDGLNANGRIVCVSSISGIAGNLGQTNYAASKAGVIGLVKFTAPILKNGITINAVAPGFIETQMTAAIPFAIREAGRRMNSMQQGGLPVDVAETIAWFASTASTGVNGNVVRVCGQSLLGA

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_B_16(4I08)
FABG_VIBCH
[Raw transfer]




NAP_B_19(3RSH)
FABG_VIBCH
[Raw transfer]




NAP_A_8(3RSH)
FABG_VIBCH
[Raw transfer]




NDP_A_8(4I08)
FABG_VIBCH
[Raw transfer]




EDO_B_22(3RRO)
FABG_VIBCH
[Raw transfer]




EDO_A_10(3RRO)
FABG_VIBCH
[Raw transfer]




CAA_B_7(4NBU)
?
[Raw transfer]




HXC_A_3(3V1U)
?
[Raw transfer]




1PE_B_5(2PNF)
FABG_AQUAE
[Raw transfer]




EDO_A_11(3RRO)
FABG_VIBCH
[Raw transfer]




PG4_A_4(3SJ7)
?
[Raw transfer]




1PE_A_6(2PNF)
FABG_AQUAE
[Raw transfer]




EDO_A_7(4I08)
FABG_VIBCH
[Raw transfer]




PGE_A_8(3RRO)
FABG_VIBCH
[Raw transfer]




24 PsiBlast_CBE 89.3448% -49 - C2 -4FW8 - ? -
5 PsiBlast_PDB 89.1648% -49 - C2 -3V1U 4.5 ?
27 PsiBlast_CBE 89.1149% -47 - C2 -3Q6I - ? -
26 PsiBlast_CBE 88.5049% -49 - C2 -3Q6I - ? -
6 PsiBlast_PDB 88.0949% -48 - C2 -3Q6I - ? -
23 PsiBlast_CBE 87.9448% -46 - C2 -4FW8 - ? -
25 PsiBlast_CBE 87.4349% -44 - C2 -3Q6I - ? -
115 HHSearch 87.3651% -49 - C2 -3Q6I - ? -
22 PsiBlast_CBE 87.0748% -48 - C2 -4FW8 - ? -
3 PsiBlast_PDB 87.0748% -45 - C2 -4FW8 - ? -
114 HHSearch 86.6251% -44 - C2 -3U0B - ? -
21 PsiBlast_CBE 80.1048% -47 - C2 -3LLS - ? -
2 PsiBlast_PDB 78.8948% -43 - C2 -3LLS - ? -
4 PsiBlast_PDB 78.1548% - - C2 -3V1T - ? -
1 PsiBlast_PDB 77.7549% 5 - C2 -3U0B - ? -
134 Fugue 75.5849% -39 - C2 -3LLS - ? -
47 PsiBlast_CBE 56.6537% -60 - C2 -4NBU - ? -
14 PsiBlast_PDB 55.9741% -44 - C2 -3U09 - FABG_VIBCH -
16 PsiBlast_PDB 55.7237% -59 - C2 -4NBU - ? -
35 PsiBlast_CBE 55.2341% -46 - C2 -3RRO 2.6 FABG_VIBCH
10 PsiBlast_PDB 54.6741% -43 - C2 -3RRO 2.9 FABG_VIBCH
11 PsiBlast_PDB 54.5541% -44 - C2 -4I08 11.1 FABG_VIBCH
61 PsiBlast_CBE 52.9735% -17 - C2 -2PNF 1.7 FABG_AQUAE
62 PsiBlast_CBE 50.2335% -19 - C2 -2PNF 1.9 FABG_AQUAE
50 PsiBlast_CBE 49.4039% -7 - C2 -3SJ7 1.9 ?