@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_08_1250: (2018-03-08 )
MRDAAATERERLPTPADGDVDSLYEDGTEAETAKQRSTVSTTTLFLALPWLGCTLFLVAVLLYVNVHTFSIWSRLVSMPGGVVADVSVQHRDMARYTVLFVSLALLAVHLAISFCLFRRAYHVLWDVQMSLVELSFMVDVIRTHQHSTFFFVDCVERAQRVRESMRYWVKEFSGFKEICAAEMAVNQVTLRLMTRPRESAQRLESPGDTQLPCTGSGTSSPVQLARGGRLPPDTTAAAFRLPQDAAWSPHVQSVRTDSAHADPGPGRQLAGHHSGSRRSLSFTTEIGIAQVPFEVTLKRRHVALLLLSFLTYRELVRAEAEEARQISRDFIAAVNMCAQRYKGCIVELYSDRAILSWNAFFESAGNYAQTCAQCGECFHDRFVRRFSPESGAYFSTAGYTGHIVCGTTTEKSLLLHGQHVSMLRGLPTLLEMRYCAYVWLGTPPPACTSSPLSWTRIGAVQAGADFSVDLHAMRRTSAEPLPAAMVWHMPQWTTFGDERAVRAEVLTNDGAARLQQDGDTAPVTPASTAASAAATGVATAFPSSPFLSSPLCLRGVGTPYETFYDRSHNRYQLSNTVLGESKSCVVRLAISETGNFVAVKEIKIERGDVKPIRRRRYQRENRIIVTRGEKPQWMNEVEIMERHRHTCIVAYISFVEAEDKLRIVMEYVGGGNLLKFASSSRGAEGEGPPMAVLLRNVVEGLKFLHQKGIVHGDIKPQNVLVPDSGPCKIADFGISRRATTAVTSAIEGTPFYMSPEATRGEVTAACDIWSFGIMMAQVLTGRLPYDASVRDYYLVSQFMCNKDVKRELHTPLKKPALDVFLACTEYDPGKRKTAKDLLKMPYFTAHAASSTEDA

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_5(2PHK)
PHKG1_RABIT
[Raw transfer]



ATP_A_2(3Q53)
PAK1_HUMAN
[Raw transfer]



DW1_A_2(3FY0)
PAK1_HUMAN
[Raw transfer]



FLL_A_2(3FXZ)
?
[Raw transfer]



EDO_A_8(4DN5)
M3K14_HUMAN
[Raw transfer]



DMS_A_3(5DFP)
PAK1_HUMAN
[Raw transfer]
40 HHSearch 72.3226% -43 - C1 -5K00 - MELK_HUMAN -
13 PsiBlast_PDB 70.6629% -55 - C1 -5IME - PAK1_HUMAN -
2 PsiBlast_PDB 68.5730% -43 - C1 -4ZJJ - PAK1_HUMAN -
18 PsiBlast_PDB 68.2829% -21 - C1 -5DEY - PAK1_HUMAN -
36 HHSearch 68.0230% -33 - C1 -5J5T - M4K3_HUMAN -
19 PsiBlast_PDB 67.5929% -19 - C1 -5DEW - PAK1_HUMAN -
46 HHSearch 67.4926% -38 - C1 -4XBR - INKA1_HUMAN (first) -
12 PsiBlast_PDB 66.5529% -24 - C1 -4O0T - PAK1_HUMAN -
32 HHSearch 66.2024% -17 - C1 -4B4L - DAPK1_HUMAN -
11 PsiBlast_PDB 66.0829% -23 - C1 -4O0R - PAK1_HUMAN -
1 PsiBlast_PDB 65.2630% -38 - C1 -4ZJI - PAK1_HUMAN -
35 HHSearch 63.9323% -26 - C1 -3C0G - CSKP_HUMAN -
8 PsiBlast_PDB 63.7629% -22 - C1 -4ZY4 - PAK1_HUMAN -
10 PsiBlast_PDB 63.7529% -24 - C1 -4ZY6 - PAK1_HUMAN -
9 PsiBlast_PDB 63.5229% -24 - C1 -4ZY5 - PAK1_HUMAN -
34 HHSearch 63.4223% -27 - C1 -3C0I - CSKP_HUMAN -
31 HHSearch 62.8224% -6 - C1 -2Y7J - PHKG2_HUMAN -
30 HHSearch 62.5124% -15 - C1 -2X0G - DAPK1_HUMAN -
38 HHSearch 62.3823% -18 - C1 -1KOB - ? -
25 HHSearch 61.5420% -30 - C1 -2WTK - STRAA_HUMAN -
6 PsiBlast_PDB 58.6833% -41 - C1 -5DFP 3.3 PAK1_HUMAN