@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H2AY_HUMAN: (2018-10-03 )
MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

APR_A_2(3IID)
H2AY_HUMAN
[Raw transfer]



APR_A_4(3IIF)
H2AY_HUMAN
[Raw transfer]



MES_A_5(1ZR3)
H2AY_HUMAN
[Raw transfer]
43 Fugue 90.19100%-131 - C5 -1ZR5 - H2AY_HUMAN -
1 PsiBlast_PDB 90.19100%-131 - C5 -1ZR5 - H2AY_HUMAN -
32 HHSearch 89.2187%-135 - C5 -5IIT - H2AY_HUMAN (first) -
2 PsiBlast_PDB 89.1887%-128 - C5 -1ZR3 3.6 H2AY_HUMAN
3 PsiBlast_PDB 88.6887%-133 - C5 -2FXK - H2AY_HUMAN -
33 HHSearch 88.0087%-130 - C5 -5LNC - H2AY_HUMAN -
31 HHSearch 87.7984%-127 - C5 -1YD9 - H2AY_RAT -
6 PsiBlast_PDB 87.5083%-127 - C5 -1YD9 - H2AY_RAT -
5 PsiBlast_PDB 86.1987%-129 - C5 -3IIF 9.9 H2AY_HUMAN
4 PsiBlast_PDB 86.0587%-126 - C5 -3IID 10.1 H2AY_HUMAN
30 HHSearch 85.5684%-127 - C5 -1YD9 - H2AY_RAT -
34 HHSearch 62.9520%-159 - C5 -5FSZ - ? -
27 HHSearch 61.1719%-156 - C5 -5FSV - ? -
35 HHSearch 60.8825% -70 - C5 -5CB5 - YMDB_ECOLI -
29 HHSearch 60.0827% -70 - C5 -3Q6Z - -
37 HHSearch 59.0426% -57 - C5 -5CB3 - YMDB_ECOLI -
28 HHSearch 58.9699%-160 - C6 -2F8N - -
9 PsiBlast_PDB 58.9699%-160 - C6 -2F8N - -
7 PsiBlast_PDB 58.7168% - - C5 -2XD7 - H2AW_HUMAN -
24 HHSearch 58.2524% -68 - C5 -2X47 - MACD1_HUMAN -