@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0773: (2017-12-29 )
MLDVEAIRKDFPILDQIVNDEPLVYLDNAATTQKPLVVLKAINSYYEQDNANVHRGVHTLAERATASYEAARETIRKFINAGSTKEVLFTRGTTTSLNWVARFAEEILTEGDQVLISVMEHHSNIIPWQEACRKTGAELVYVYLKDGALDMEGLRAKLTDKVKFVSLAHASNVLGVVNPIKEITQLAHQVGAIMVVDGAQSTPHMKIDVQDLDLDFFAFSAHKMAGPTGIGVLYGKEKYLEQMSPVEFGGEMIDFVYEQSASWKELPWKFEAGTPNMAGAIGLATAVDYLEKIGMDAIEAHEQELIAYVYPKLQAIEGLTIYGSQDLAQRSGVIAFNLGDLHPHDLATALDYEGVAVRAGHHCAQPLLQYLEVPATARASFYIYNTKADCDKLVDALQKTKEFFNGTF

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CIT_A_6(5FT4)
CSDA_ECOLI
[Raw transfer]




CIT_B_12(5FT4)
CSDA_ECOLI
[Raw transfer]




GOL_A_5(4LW2)
CSDA_ECOLI
[Raw transfer]




LPG_C_3(1I29)
SUFS_ECOLI
[Raw transfer]




ALA_A_4(5B87)
?
[Raw transfer]




ACY_E_5(1C0N)
SUFS_ECOLI
[Raw transfer]




GOL_B_13(5FT6)
CSDA_ECOLI
[Raw transfer]




ALA_A_3(5J8Q)
SUFS_BACSU
[Raw transfer]




PLP_B_5(1T3I)
CSD_SYNY3
[Raw transfer]




PLP_B_17(5FT5)
CSDA_ECOLI
[Raw transfer]




PLP_A_2(5J8Q)
SUFS_BACSU
[Raw transfer]




PLP_A_10(5FT6)
CSDA_ECOLI
[Raw transfer]




CYS_E_5(1ECX)
?
[Raw transfer]




PLP_A_10(5FT6)
CSDA_ECOLI
[Raw transfer]




PLP_A_3(1JF9)
SUFS_ECOLI
[Raw transfer]




PLP_A_2(5J8Q)
SUFS_BACSU
[Raw transfer]




PLP_E_5(1I29)
SUFS_ECOLI
[Raw transfer]




PLP_A_3(1C0N)
SUFS_ECOLI
[Raw transfer]




PLP_A_3(5FT4)
CSDA_ECOLI
[Raw transfer]




IPA_A_4(5B7U)
?
[Raw transfer]




PLP_B_6(4LW2)
CSDA_ECOLI
[Raw transfer]




PLP_B_6(4LW2)
CSDA_ECOLI
[Raw transfer]




PLP_B_7(5FT4)
CSDA_ECOLI
[Raw transfer]




PLP_B_7(5B89)
?
[Raw transfer]




PLP_A_11(5FT5)
CSDA_ECOLI
[Raw transfer]




PLP_A_5(4LW4)
CSDA_ECOLI
[Raw transfer]




PLP_A_4(4LW2)
CSDA_ECOLI
[Raw transfer]




PLP_B_7(5B89)
?
[Raw transfer]




PLP_B_15(5FT6)
CSDA_ECOLI
[Raw transfer]




PLP_C_8(4LW2)
CSDA_ECOLI
[Raw transfer]




IPA_A_4(5B7U)
?
[Raw transfer]




PLP_B_6(4LW4)
CSDA_ECOLI
[Raw transfer]




PLP_B_5(5B87)
?
[Raw transfer]




PLP_A_3(5B87)
?
[Raw transfer]




PLP_A_4(5B89)
?
[Raw transfer]




5 PsiBlast_PDB 81.4646% -50 - C2 -1JF9 3.8 SUFS_ECOLI
6 PsiBlast_PDB 80.4146% -46 - C2 -5DB5 - SUFS_ECOLI -
28 PsiBlast_CBE 80.3846% -46 - C2 -5DB5 - SUFS_ECOLI -
4 PsiBlast_PDB 79.9946% -51 - C2 -1I29 4.4 SUFS_ECOLI
50 HHSearch 78.9261% -2 - C2 -5J8Q 4.5 SUFS_BACSU
1 PsiBlast_PDB 78.9260% -2 - C2 -5J8Q 4.5 SUFS_BACSU
9 PsiBlast_PDB 78.5646% -53 - C2 -1C0N 3.6 SUFS_ECOLI
46 HHSearch 77.0747% -15 - C2 -4W91 - ? -
3 PsiBlast_PDB 76.4147% -16 - C2 -4W91 - ? -
2 PsiBlast_PDB 75.1449% -43 - C2 -5VPR - ? -
21 PsiBlast_CBE 75.1349% -29 - C2 -1T3I 3.3 CSD_SYNY3
51 HHSearch 74.8150% -40 - C2 -5VPR - ? -
7 PsiBlast_PDB 74.7749% - - C2 -4Q76 - CNIF1_ARATH -
49 HHSearch 73.8242% -15 - C2 -5FT6 3.1 CSDA_ECOLI
19 PsiBlast_PDB 73.1441% -16 - C2 -5FT6 3.1 CSDA_ECOLI
13 PsiBlast_PDB 72.6941% -19 - C2 -4LW2 3.2 CSDA_ECOLI
52 HHSearch 72.6342% -16 - C2 -4LW2 3.4 CSDA_ECOLI
32 PsiBlast_CBE 72.2641% -21 - C2 -5FT4 3.4 CSDA_ECOLI
18 PsiBlast_PDB 72.2441% -16 - C2 -5FT5 4.5 CSDA_ECOLI
29 PsiBlast_CBE 72.1141% -20 - C2 -4LW4 3.6 CSDA_ECOLI
31 PsiBlast_CBE 72.0441% -18 - C2 -4LW2 3.4 CSDA_ECOLI
15 PsiBlast_PDB 71.8541% -17 - C2 -5FT4 3.6 CSDA_ECOLI
43 PsiBlast_CBE 71.6441% -16 - C2 -5FT5 3.1 CSDA_ECOLI
30 PsiBlast_CBE 71.3541% -19 - C2 -4LW2 3.2 CSDA_ECOLI
55 HHSearch 71.2440% -22 * C2 *5B89 3.8 ?
56 HHSearch 71.1540% -20 - C2 -5B7U 3.6 ?
11 PsiBlast_PDB 71.0340% -10 - C2 -5B87 2.8 ?
42 PsiBlast_CBE 70.9341% -16 - C2 -5FT6 3.5 CSDA_ECOLI
14 PsiBlast_PDB 70.4341% -17 - C2 -4LW4 3.6 CSDA_ECOLI
41 PsiBlast_CBE 70.1240% -9 - C2 -5B87 3.7 ?
12 PsiBlast_PDB 70.0240% -10 - C2 -5B89 3.9 ?
40 PsiBlast_CBE 69.4240% -12 - C2 -5B89 3.8 ?
17 PsiBlast_PDB 69.0339% -11 - C2 -5B7U 3.6 ?