@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1397: (2018-01-11 )
MTKRVTIIDVKDYVGQEVTIGAWVANKSGKGKIAFLQLRDGTAFFQGVAFKPNFVEKFGEEVGLEKFDVIKRLSQETSVYVTGIVKEDERSKFGYELDITDIEVIGESQDYPITPKEHGTDFLMDNRHLWLRSRKQVAVLQIRNAIIYVTYEFFDKNGFMKFDSPILSGNAAEDSTELFETDYFGTPAYLSQSGQLYLEAGAMALGRVFDFGPVFRAEKSKTRRHLTEFWMMDAEYSYLTHDESLDLQEAYVKALLQGVLDRAPQALETLERDTELLKRYIAEPFKRITYDQAIDLLQEHENDEDADYEHLEHGDDFGSPHETWISNHFGVPTFVMNYPAAIKAFYMKPVPGNPERVLCADLLAPEGYGEIIGGSMREEDYDALVAKMDELGMDRTEYEFYLDLRKYGTVPHGGFGIGIERMVTFAAGTKHIREAIPFPRMLHRIKP

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NSS_A_5(1X55)
SYN_PYRHO
[Raw transfer]



NSS_A_5(1X55)
SYN_PYRHO
[Raw transfer]



NSS_A_4(2XGT)
?
[Raw transfer]



4AD_A_3(1X54)
SYN_PYRHO
[Raw transfer]



AMO_A_3(3NEM)
SYD_THEKO
[Raw transfer]



4AD_A_3(1X54)
SYN_PYRHO
[Raw transfer]



NB8_A_3(2XTI)
?
[Raw transfer]



ATP_B_10(1B8A)
SYD_THEKO
[Raw transfer]



ATP_A_9(1B8A)
SYD_THEKO
[Raw transfer]



ATP_A_9(1B8A)
SYD_THEKO
[Raw transfer]



ATP_B_4(3NEM)
SYD_THEKO
[Raw transfer]



ATP_B_8(2XTI)
?
[Raw transfer]



ASP_A_3(3NEL)
SYD_THEKO
[Raw transfer]



EPE_A_7(1WYD)
SYDND_SULTO
[Raw transfer]
67 HHSearch 87.7644% -4 - C8 -1X55 7.5 SYN_PYRHO
2 PsiBlast_PDB 87.4542% -3 - C8 -1X55 7.5 SYN_PYRHO
68 HHSearch 86.9044% -3 - C8 -1X54 8.1 SYN_PYRHO
1 PsiBlast_PDB 86.5242% -1 - C8 -1X54 8.1 SYN_PYRHO
3 PsiBlast_PDB 86.2342% -13 - C8 -1X56 - SYN_PYRHO -
6 PsiBlast_PDB 78.6833% -10 - C8 -2XTI 8.1 ?
24 PsiBlast_CBE 75.9733% 2 - C8 -2XTI 6.3 ?
21 PsiBlast_CBE 75.8232% 18 - C8 -3M4P - ? -
22 PsiBlast_CBE 75.1932% 7 - C8 -3M4P - ? -
12 PsiBlast_PDB 75.1629% 2 - C8 -1WYD 2.4 SYDND_SULTO
7 PsiBlast_PDB 74.9733% -1 - C8 -2XGT 7.9 ?
4 PsiBlast_PDB 74.5232% 19 - C8 -3M4P - ? -
76 HHSearch 74.3932% 4 - C8 -3NEL - SYD_THEKO -
79 HHSearch 74.2134% 6 - C8 -3M4P - ? -
66 HHSearch 74.0331% 28 * C8 *1WYD - SYDND_SULTO -
23 PsiBlast_CBE 73.5332% 20 - C8 -3M4P - ? -
77 HHSearch 73.3932% 7 - C8 -3NEM - SYD_THEKO -
80 HHSearch 73.2334% - - C8 -3M4Q - ? -
71 HHSearch 72.3932% 12 - C8 -3I7F - ? -
10 PsiBlast_PDB 72.2932% 2 - C8 -3NEN - SYD_THEKO -
26 PsiBlast_CBE 72.1032% 5 - C8 -1B8A 7.3 SYD_THEKO
9 PsiBlast_PDB 71.9532% 5 - C8 -3NEM 8.2 SYD_THEKO
25 PsiBlast_CBE 71.3932% 4 - C8 -3NEM 7.2 SYD_THEKO
11 PsiBlast_PDB 71.3032% 6 - C8 -1B8A 7.0 SYD_THEKO
54 Fugue 65.8334% 39 - C8 -1B8A 7.0 SYD_THEKO