@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1492: (2018-01-13 )
MIRIENLSVSYKDTLALKDISLVLHGPTITGIIGPNGAGKSTLLKGMLGIIPHQGQAFLDDKEVKKSLHRIAYVEQKINIDYNFPIKVKECVSLGLFPSIPLFRSLKAKHWKKVQEALEIVGLADYAERQISQLSGGQFQRVLIARCLVQEADYILLDEPFAGIDSVSEEIIMNTLRDLKKAGKTVLIVHHDLSKIPHYFDQVLLVNREVIAFGPTKETFTETNLKEAYGNQLFFNGGDL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]



ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]



ACP_A_4(5X40)
CBIO_RHOCB
[Raw transfer]



ADP_A_4(1G6H)
LIVG_METJA
[Raw transfer]



ACP_B_6(5X40)
CBIO_RHOCB
[Raw transfer]



ADP_A_8(1G9X)
LIVG_METJA
[Raw transfer]



ADP_A_6(3BK7)
?
[Raw transfer]



ADP_B_3(3J15)
?
[Raw transfer]



GOL_B_11(4P33)
LPTB_ECOLI
[Raw transfer]



LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]



IPA_A_6(3TIF)
Y796_METJA
[Raw transfer]
1 PsiBlast_PDB 84.3731% -7 - C1 -2NQ2 - Y1470_HAEIN -
12 PsiBlast_PDB 81.3829% -35 - C1 -1G6H 6.4 LIVG_METJA
2 PsiBlast_PDB 80.5533% -14 - C1 -3GFO - ECFA3_CLOP1 -
19 PsiBlast_PDB 78.5828% -40 - C1 -4P31 - LPTB_ECOLI -
6 PsiBlast_PDB 77.3234% -13 - C1 -5X3X - CBIO_RHOCB -
14 PsiBlast_PDB 77.0228% -44 - C1 -4P32 - LPTB_ECOLI -
45 HHSearch 74.7830% -32 - C1 -3FVQ 7.3 FBPC_NEIG1
18 PsiBlast_PDB 74.4327% -39 - C1 -4P33 2.5 LPTB_ECOLI
13 PsiBlast_PDB 73.4028% -32 - C1 -4QC2 - ? -
24 PsiBlast_CBE 72.7933% -17 - C1 -5X40 5.8 CBIO_RHOCB
55 HHSearch 72.1932% -19 - C1 -5X3X - CBIO_RHOCB -
20 PsiBlast_PDB 72.1829% -22 - C1 -5X5Y - ? -
3 PsiBlast_PDB 71.5632% -40 - C1 -4U00 - ? -
9 PsiBlast_PDB 71.3828% -49 - C1 -5B57 - ? -
15 PsiBlast_PDB 71.2329% -28 - C1 -1GAJ - LIVG_METJA -
4 PsiBlast_PDB 70.2132% -39 - C1 -4U02 - ? -
44 HHSearch 69.6928% -32 - C1 -3RLF - MALK_ECOLI -
43 HHSearch 69.3028% -34 - C1 -2AWN - MALK_ECOLI -
8 PsiBlast_PDB 69.0033% -14 - C1 -5X40 5.8 CBIO_RHOCB
16 PsiBlast_PDB 67.9829% -34 - C1 -1G9X 5.0 LIVG_METJA
26 PsiBlast_CBE 48.6533% 42 - C1 -3TIF 3.1 Y796_METJA
32 PsiBlast_CBE 39.8032% -16 - C1 -3J15 4.0 ?
33 PsiBlast_CBE 35.4432% -9 - C1 -3BK7 3.8 ?