@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VKR7: (2017-10-28 )
MSSIVAIKGFNDVLPTQTAAWRRLEQHLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMYTFFDKGNPPESLTLRPEGTAGCVRALVEHNLLRGATPRVWYMGPMFRYEKPQKGRYRQFHQFGVETFGVATPDIDAELIMLTARLWKRMGVDHMVQLELNTLGETDERTEYRNALVAFLNEHKDALDEDSQRRLTTNPLRILDSKIESTQKILENAPKLHDFLKEDSLSHFQQLQDYLTAAGIKFVINQKLVRGLDYYNKTVFEWTTTALGSQGTVCAGGRYDGLVGQLKGKADQSVPAVGFAMGMERLLLLLEQVEQAEIVRHCEAFLVAEPAYQSKALVLAEQLRDQLEAANSNIRIKTGSQSSMKSQMKKADQAGAVYAIILGEREWEAQQLAVKELATAEQSQVALAELVPFLIEKFTK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_4(5E3I)
SYH_ACIBS
[Raw transfer]




ATP_B_7(5E3I)
SYH_ACIBS
[Raw transfer]




ATP_B_7(5E3I)
SYH_ACIBS
[Raw transfer]




AMP_A_3(4RDX)
SYH_THET2
[Raw transfer]




HIS_A_3(4E51)
SYH_BURTA
[Raw transfer]




HIS_A_3(4E51)
SYH_BURTA
[Raw transfer]




HIS_B_4(4E51)
SYH_BURTA
[Raw transfer]




HIS_B_4(4E51)
SYH_BURTA
[Raw transfer]




LMR_A_2(3RAC)
?
[Raw transfer]




21 PsiBlast_CBE 97.1399%-112 - C2 -5E3I 7.9 SYH_ACIBS
1 PsiBlast_PDB 95.6599%-112 - C2 -5E3I 8.4 SYH_ACIBS
43 HHSearch 81.8298% 4 - C2 -5E3I 8.0 SYH_ACIBS
6 PsiBlast_PDB 77.9048% -77 - C2 -4E51 3.3 SYH_BURTA
34 PsiBlast_CBE 75.7148% -86 - C2 -4E51 2.9 SYH_BURTA
3 PsiBlast_PDB 71.8056% -72 - C2 -1KMM - SYH_ECOLI -
26 PsiBlast_CBE 71.5956% -70 - C2 -1KMM - SYH_ECOLI -
31 PsiBlast_CBE 71.1256% -75 - C2 -2EL9 - SYH_ECOLI -
33 PsiBlast_CBE 70.9756% -73 - C2 -2EL9 - SYH_ECOLI -
32 PsiBlast_CBE 70.9256% -73 - C2 -2EL9 - SYH_ECOLI -
22 PsiBlast_CBE 70.6856% -83 - C2 -1KMN - SYH_ECOLI -
25 PsiBlast_CBE 70.5356% -78 - C2 -1KMM - SYH_ECOLI -
28 PsiBlast_CBE 70.4956% -77 - C2 -1HTT - SYH_ECOLI -
44 HHSearch 70.4756% -62 - C2 -1KMM - SYH_ECOLI -
2 PsiBlast_PDB 70.3756% -71 - C2 -1HTT - SYH_ECOLI -
24 PsiBlast_CBE 70.2456% -79 - C2 -1KMN - SYH_ECOLI -
48 HHSearch 70.1750% -3 - C2 -4E51 3.3 SYH_BURTA
45 HHSearch 70.1456% -63 - C2 -1KMN - SYH_ECOLI -
4 PsiBlast_PDB 70.0156% -76 - C2 -1KMN - SYH_ECOLI -
29 PsiBlast_CBE 69.8456% -76 - C2 -1HTT - SYH_ECOLI -
47 HHSearch 69.2550% -11 - C2 -4E51 2.9 SYH_BURTA
8 PsiBlast_PDB 55.9037% 12 - C2 -4RDX 6.8 SYH_THET2