@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VM71: (2017-11-06 )
MKPNDVVSNLLNNPTPNTHASVDSAQQEQQAGLDFVRQVITDDLAAGRAKQIVTRFPPEPNGYLHIGHVKAICLNFGVAEEFNGLCNLRFDDTNPDAEEQEYVDGIANDVKWLGFSWNGEPRYASGYFDQLYAWAIQLIEQGDAYVDLQSPEEIKLNRGSFVEPGKNSPYRDASVEENLARFEKMRNGELKEGEAVLRAKIDMASPNVHMRDPILYRVLHSEHHQTGDKWKIYPMYDYAHPLSDAIEGITHSLCTLEFQDHRPFYDWIVEKVKPKAVPHQYESSRLNVDYTITSKRKLRKLVEGGYVNGWDDPRMPTVVGMRRRGFTPEGLRDFCKRVGVSKTDGIVDVAMLEFCIRQSLENTAARGMAVLNPLKVTLTNLPEDLDLTHARHPNVDMGERVIPLTKEIYIDRKDFEEVPPKGFKRLIPDGEVRLRHAYVIKCDEVIKDANGEVVELKCSIDPDTLGKNPEGRKVKGVIHWVSATKGIPAEVRIYDRLFTEADPETGDDFLANLNPDSLKVVQAVIEPALAQAKPEDRFQFEREGYFVADQYDHTPEKPVFNRVLDLKDSFKPEKK

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_C_3(1GTR)
SYQ_ECOLI
[Raw transfer]



ATP_A_3(4JXZ)
SYQ_ECOLI
[Raw transfer]



ATP_A_3(4JXX)
SYQ_ECOLI
[Raw transfer]



ATP_A_3(1QRS)
SYQ_ECOLI
[Raw transfer]



ATP_A_3(1QRU)
SYQ_ECOLI
[Raw transfer]



GSU_A_5(2RE8)
SYQ_ECOLI
[Raw transfer]



QSI_C_3(1EUQ)
SYQ_ECOLI
[Raw transfer]



ATP_A_3(1QRT)
SYQ_ECOLI
[Raw transfer]



ATP_A_3(4JYZ)
SYQ_ECOLI
[Raw transfer]



ATP_A_3(4JYZ)
SYQ_ECOLI
[Raw transfer]



AMP_E_5(1ZJW)
SYQ_ECOLI
[Raw transfer]



QSI_A_5(2RD2)
SYQ_ECOLI
[Raw transfer]



QSI_C_3(1EUY)
SYQ_ECOLI
[Raw transfer]



QSI_G_7(1QTQ)
SYQ_ECOLI
[Raw transfer]



QSI_G_7(1QTQ)
SYQ_ECOLI
[Raw transfer]



QSI_G_7(1QTQ)
SYQ_ECOLI
[Raw transfer]



AMP_C_3(1GTS)
SYQ_ECOLI
[Raw transfer]



AMP_F_6(1O0C)
SYQ_ECOLI
[Raw transfer]



AMP_F_6(1O0B)
SYQ_ECOLI
[Raw transfer]



A_F_6(1EXD)
SYQ_ECOLI
[Raw transfer]



GOL_A_4(4H3S)
SYQ_YEAST
[Raw transfer]



GOL_A_3(4H3S)
SYQ_YEAST
[Raw transfer]
1 PsiBlast_PDB 87.0861% -39 - C6 -5BNZ - SYQ_PSEAE -
3 PsiBlast_PDB 83.0657% -54 - C6 -1O0C 5.7 SYQ_ECOLI
13 PsiBlast_PDB 82.9057% -58 - C6 -1EUY 7.3 SYQ_ECOLI
2 PsiBlast_PDB 82.6557% -54 - C6 -1O0B 4.6 SYQ_ECOLI
19 PsiBlast_PDB 82.6357% -51 - C6 -2RE8 7.8 SYQ_ECOLI
11 PsiBlast_PDB 82.5857% -42 - C6 -4JYZ 6.9 SYQ_ECOLI
9 PsiBlast_PDB 82.4157% -53 - C6 -4JXX 6.4 SYQ_ECOLI
6 PsiBlast_PDB 82.3857% -54 - C6 -1GTS 6.8 SYQ_ECOLI
46 HHSearch 82.2762% 2 - C6 -5BNZ - SYQ_PSEAE -
5 PsiBlast_PDB 82.2557% -52 - C6 -1GTR 7.0 SYQ_ECOLI
14 PsiBlast_PDB 82.1857% -56 - C6 -1EXD 5.6 SYQ_ECOLI
8 PsiBlast_PDB 82.0857% -51 - C6 -1ZJW 6.4 SYQ_ECOLI
10 PsiBlast_PDB 82.0257% -52 - C6 -4JXZ 6.4 SYQ_ECOLI
15 PsiBlast_PDB 81.9557% -52 - C6 -1QRS 6.8 SYQ_ECOLI
17 PsiBlast_PDB 81.8357% -52 - C6 -1QRT 6.2 SYQ_ECOLI
18 PsiBlast_PDB 81.6757% -49 - C6 -2RD2 8.0 SYQ_ECOLI
7 PsiBlast_PDB 81.6257% -53 - C6 -1QTQ 8.4 SYQ_ECOLI
12 PsiBlast_PDB 81.5357% -56 - C6 -1EUQ 5.9 SYQ_ECOLI
16 PsiBlast_PDB 81.0957% -52 - C6 -1QRU 6.7 SYQ_ECOLI
4 PsiBlast_PDB 79.4157% - - C6 -1GSG - SYQ_ECOLI -
49 HHSearch 77.8956% -6 - C6 -4JYZ 6.9 SYQ_ECOLI
48 HHSearch 76.7256% -11 - C6 -1QTQ 8.4 SYQ_ECOLI
22 PsiBlast_CBE 67.2840% 19 - C6 -4H3S 3.0 SYQ_YEAST
35 Fugue 55.6560% 2 - C6 -1QTQ 8.4 SYQ_ECOLI