@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VME5: (2017-11-07 )
MSDALRIALVGNPNCGKTSLFNHLTGTRQKVANYAGVTVERKVGHFQLPSGRSVRVLDLPGAYSLNATSPDEAITRDVCLGKIAEEGQQDAFLCVVDATNLKLHLGLVLEMIELGRPILLVLNMMDEARRRGIQINTQKLSQRLGVPVVETVAVRNAGIENLLHALDQEKYSVPQTELSGLTGTHHQKIDMIFKDVVHYVDQEDKRTDFLDRIFLHPVLGLLSLAIMMFIVFQAVFAWAAPFMDGIEGFFGWLGEVVGSVITQPLLHSLVVDGIIAGAGGVVVFLPQILILFFFILVLEESGYLPRAAFLLDKLMFQAGLSGRAFIPLLSSFACAVPGIMATRSISDPRDRFTTIMVAPLMTCSARLPVYALLIAAFIPEKMVWGIFNLQGLVLFGLYMAGIVSALCVSFLMKFFQKDKSQHALLLELPSYRFPDLKSVGIGLLDRAKIFLKRVGGIIFALSILLWFLCTFPQPPEGATLPAIDYSFAGMLGHLIQPLFAPVGFNWQICIALIPAMAAREVVVAALGTVYALSATDEDAVAQGLSHLISADGTGWSLATGLSLLVWFIYAPHCLATLATVRRETGSWKHVAAMTAYLFGLAYFASFVTYQIASHYWG

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_B_7(3A1U)
?
[Raw transfer]




GDP_B_4(2WIB)
?
[Raw transfer]




GDP_B_5(3I8X)
FEOB_ECOLI
[Raw transfer]




GDP_A_3(3SS8)
?
[Raw transfer]




GNP_A_3(3A1U)
?
[Raw transfer]




GNH_A_2(3B1Y)
?
[Raw transfer]




GDP_B_7(3SS8)
?
[Raw transfer]




GNP_A_3(3B1X)
?
[Raw transfer]




GNP_A_2(2WIC)
?
[Raw transfer]




GDP_A_3(2WIB)
?
[Raw transfer]




GGM_A_2(3B1V)
?
[Raw transfer]




GDP_B_6(3B1W)
?
[Raw transfer]




AGO_A_2(3LX5)
?
[Raw transfer]




GGM_A_2(3B1V)
?
[Raw transfer]




AGO_C_8(3HYT)
FEOB_ECOLI
[Raw transfer]




GNP_B_5(3B1X)
?
[Raw transfer]




BGO_B_6(3TAH)
?
[Raw transfer]




GCP_B_7(3I92)
FEOB_ECOLI
[Raw transfer]




GDP_A_3(4NON)
?
[Raw transfer]




AGO_A_4(3HYT)
FEOB_ECOLI
[Raw transfer]




GDP_A_3(4NON)
?
[Raw transfer]




GDP_C_7(3B1W)
?
[Raw transfer]




GDP_C_6(3I8X)
FEOB_ECOLI
[Raw transfer]




GDP_A_2(3LX8)
?
[Raw transfer]




GDP_D_8(3B1W)
?
[Raw transfer]




BGO_A_3(3TAH)
?
[Raw transfer]




GCP_A_5(3I92)
FEOB_ECOLI
[Raw transfer]




GDP_B_4(4NON)
?
[Raw transfer]




GDP_A_5(3B1W)
?
[Raw transfer]




AGO_B_6(3HYT)
FEOB_ECOLI
[Raw transfer]




GCP_C_9(3I92)
FEOB_ECOLI
[Raw transfer]




GDP_A_3(3W5J)
?
[Raw transfer]




EPE_A_5(3A1V)
?
[Raw transfer]




GNH_A_3(4R98)
FEOB_ECOLI
[Raw transfer]




GDP_A_3(3A1S)
?
[Raw transfer]




79 Fugue 84.4634%-125 - C- -3I8S - FEOB_ECOLI -
20 PsiBlast_PDB 84.0346%-164 - C4 -3I92 5.6 FEOB_ECOLI
36 PsiBlast_CBE 83.4846%-165 - C4 -3I8X 6.9 FEOB_ECOLI
34 PsiBlast_CBE 83.4446%-154 - C4 -3I92 7.0 FEOB_ECOLI
35 PsiBlast_CBE 83.1146%-168 - C4 -3I8X 6.0 FEOB_ECOLI
43 PsiBlast_CBE 82.8545%-163 - C4 -2WIB 6.0 ?
41 PsiBlast_CBE 82.6345%-182 - C4 -2WIC 8.0 ?
18 PsiBlast_PDB 81.9147%-158 - C4 -4Q00 - FEOB_ECOLI -
11 PsiBlast_PDB 81.5938%-148 - C4 -3A1T - ? -
33 PsiBlast_CBE 81.5746%-162 - C4 -3I92 5.7 FEOB_ECOLI
19 PsiBlast_PDB 81.2846%-169 - C- -3I8S - FEOB_ECOLI -
37 PsiBlast_CBE 80.2946%-173 - C4 -3HYT 7.2 FEOB_ECOLI
42 PsiBlast_CBE 79.7445%-169 - C4 -2WIB 6.4 ?
39 PsiBlast_CBE 79.6446%-174 - C4 -3HYT 6.6 FEOB_ECOLI
67 HHSearch 79.4242%-144 - C4 -3A1S 2.4 ?
38 PsiBlast_CBE 79.3646%-180 - C4 -3HYT 5.0 FEOB_ECOLI
12 PsiBlast_PDB 79.2838%-145 - C4 -3A1U Error ?
15 PsiBlast_PDB 79.0645%-162 - C4 -2WJG - FEOB_METJA -
32 PsiBlast_CBE 79.0545%-166 - C4 -2WJG - FEOB_METJA -
16 PsiBlast_PDB 78.3645%-163 - C4 -2WJH - FEOB_METJA -
60 HHSearch 77.5145%-123 - C4 -4NON 6.1 ?
4 PsiBlast_PDB 76.4545%-140 - C4 -4NON 6.1 ?
29 PsiBlast_CBE 76.4238%-152 - C4 -3A1U Error ?
2 PsiBlast_PDB 75.9946%-142 - C4 -3LX8 6.2 ?
48 PsiBlast_CBE 75.4435%-174 - C4 -3W5J 5.9 ?
9 PsiBlast_PDB 75.4145%-145 - C4 -3B1W 5.5 ?
25 PsiBlast_CBE 75.2545%-144 - C4 -3B1W 5.4 ?
10 PsiBlast_PDB 75.0045%-138 - C4 -3TAH 5.7 ?
46 PsiBlast_CBE 74.8644%-149 - C4 -4R98 4.8 FEOB_ECOLI
27 PsiBlast_CBE 74.7045%-139 - C4 -3TAH 6.0 ?
22 PsiBlast_CBE 74.4245%-145 - C4 -4NON 5.6 ?
26 PsiBlast_CBE 74.3145%-143 - C4 -3B1W 6.4 ?
24 PsiBlast_CBE 74.0445%-138 - C4 -3B1W 6.1 ?
21 PsiBlast_CBE 73.3946%-132 - C4 -3SS8 7.6 ?
23 PsiBlast_CBE 72.9346%-132 - C4 -3B1X 9.8 ?
7 PsiBlast_PDB 72.8945%-144 - C4 -3B1Y 6.9 ?
62 HHSearch 72.3145%-115 - C4 -3B1V 10.7 ?
6 PsiBlast_PDB 72.2546%-133 - C4 -3B1X 9.0 ?
3 PsiBlast_PDB 72.0846%-133 - C4 -3SS8 7.2 ?
1 PsiBlast_PDB 71.4346%-130 - C4 -3LX5 9.3 ?
8 PsiBlast_PDB 70.6845%-131 - C4 -3B1V 10.7 ?