@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VN00: (2017-11-11 )
MTVQIITIDGPSGSGKGTLAAKLAAYYQFHLLDSGALYRLLGLSLHKHDLLEKLDSHLDECVNYARQLNIKFETSAEGTLVFLDGEDVTQTIRTERVGEYASKVAAIPELRQALFERQRAFAQTPGLVADGRDMATSIFPEANAKIYLTASAESRAERRVKQLQGMGLDAKINDILANIQARDKRDMEREVAPLKPAGDAYIIDSSELTIDQVFKLMVDYVNSRTVSN

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CDP_D_4(2CMK)
KCY_ECOLI
[Raw transfer]




C_H_8(1KDO)
KCY_ECOLI
[Raw transfer]




C_E_5(1KDP)
KCY_ECOLI
[Raw transfer]




CAR_F_6(1KDR)
KCY_ECOLI
[Raw transfer]




C_I_9(1KDO)
KCY_ECOLI
[Raw transfer]




CAR_G_7(1KDR)
KCY_ECOLI
[Raw transfer]




C_F_6(1KDP)
KCY_ECOLI
[Raw transfer]




CDP_A_2(3AKD)
KCY_THET8
[Raw transfer]




DOC_F_6(1KDT)
KCY_ECOLI
[Raw transfer]




DOC_G_7(1KDT)
KCY_ECOLI
[Raw transfer]




DC_C_3(2FEO)
KCY_ECOLI
[Raw transfer]




C5P_B_7(4DIE)
?
[Raw transfer]




C5P_C_9(4DIE)
?
[Raw transfer]




C_I_9(1KDO)
KCY_ECOLI
[Raw transfer]




ADP_A_3(3AKC)
KCY_THET8
[Raw transfer]




DPO_A_2(3R20)
?
[Raw transfer]




BA3_A_6(1VHT)
COAE_ECOLI
[Raw transfer]




49 Fugue 81.6445%-127 - C3 -1CKE - KCY_ECOLI -
1 PsiBlast_PDB 80.6249% -4 - C3 -2CMK 6.3 KCY_ECOLI
5 PsiBlast_PDB 79.7449% 2 - C3 -1KDT 6.9 KCY_ECOLI
3 PsiBlast_PDB 79.4949% 4 - C3 -1KDP 8.0 KCY_ECOLI
21 PsiBlast_CBE 79.4249% 1 - C3 -1KDT 6.6 KCY_ECOLI
24 PsiBlast_CBE 79.2849% 0 - C3 -1KDO 8.6 KCY_ECOLI
23 PsiBlast_CBE 78.9649% -1 - C3 -1KDP 6.6 KCY_ECOLI
2 PsiBlast_PDB 78.3949% 0 - C3 -1KDO 8.8 KCY_ECOLI
4 PsiBlast_PDB 77.2849% 5 - C3 -1KDR 6.2 KCY_ECOLI
22 PsiBlast_CBE 77.0149% 8 - C3 -1KDR 5.7 KCY_ECOLI
6 PsiBlast_PDB 75.5249% -1 - C3 -1CKE - KCY_ECOLI -
7 PsiBlast_PDB 75.2648% 2 - C3 -2FEM - KCY_ECOLI -
9 PsiBlast_PDB 73.9149% 9 - C3 -4E22 - KCY_YERPY -
8 PsiBlast_PDB 71.8448% 3 - C3 -2FEO 4.2 KCY_ECOLI
18 PsiBlast_PDB 71.4833%-137 - C3 -3W90 - KCY_THET8 -
61 HHSearch 70.6036% -63 - C3 -4DIE - ? -
19 PsiBlast_PDB 70.3133%-134 - C3 -3W8N - KCY_THET8 -
17 PsiBlast_PDB 69.6633%-117 - C3 -3AKE - KCY_THET8 -
65 HHSearch 69.5232%-110 - C3 -3AKE - KCY_THET8 -
12 PsiBlast_PDB 67.8740% 7 - C3 -1Q3T - KCY_STRPN -
27 PsiBlast_CBE 62.9637% -3 - C3 -4DIE 5.6 ?
66 HHSearch 49.3648% -72 - C3 -1KDO 4.8 KCY_ECOLI