@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VPN8: (2017-11-22 )
MAKLNFKSEQDFFILFEQLKALFPNASLFLADTSTQAIHYKFNTDDISVESMTALTQDHHNRYLEINTPKMRKRFIYQENDIYIAEHRIIGKLHILQPVSIENDIADQVELTEQLQDLAKVFNSCSPEMTRMFSIIQRVAIAEFPVLVRGESGSGKELVAQAIHDYSQRKNKIFVAINCAALNSNILESELFGHVKGAFTGAIRDHKGVFERAAGGTLFLDEIAEIPLELQAKLLRVLETGEFTPVGGEKPIQANVRIITATHKALREEAKAGRFRHDLLYRLRVIPIFIPPLRERKVDIPLIVDQILKESSTQLDTMPRHVNQKAMQVLLNYDWPGNVRELKNTLLYALTMANGKDEIEVEDLPNELLDADEYVKLPENNAELTPENVQAALEKYNHNLNMVANIFGISRTTLWRYRQKHKL

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AGS_A_2(5EXS)
?
[Raw transfer]



ATP_A_2(5EP4)
?
[Raw transfer]



ADP_B_9(1NY5)
?
[Raw transfer]



ADP_A_8(1NY5)
?
[Raw transfer]



ATP_A_2(2C96)
PSPF_ECOLI
[Raw transfer]



ANP_A_2(2C99)
PSPF_ECOLI
[Raw transfer]



ATP_A_2(4QNR)
PSPF_ECOLI
[Raw transfer]



ADP_A_2(5EXT)
?
[Raw transfer]



ATP_A_3(2C9C)
PSPF_ECOLI
[Raw transfer]



ADP_A_3(3DZD)
?
[Raw transfer]



ADP_A_2(2C98)
PSPF_ECOLI
[Raw transfer]



AMP_A_2(2VII)
PSPF_ECOLI
[Raw transfer]



ADP_B_4(4BS1)
?
[Raw transfer]



ADP_B_4(4BT1)
?
[Raw transfer]



ADP_B_4(4BT0)
?
[Raw transfer]



ADP_B_4(4BS1)
?
[Raw transfer]



EDO_A_5(5EXP)
?
[Raw transfer]



EDO_A_5(5EXP)
?
[Raw transfer]



AZU_A_2(5EP2)
?
[Raw transfer]



5QT_A_2(5EP3)
?
[Raw transfer]
143 Fugue 90.5143%-112 - C5 -1OJL - ZRAR_SALTY -
121 HHSearch 87.6143% -91 - C5 -1OJL - ZRAR_SALTY -
2 PsiBlast_PDB 86.8244% -99 - C5 -1OJL - ZRAR_SALTY -
8 PsiBlast_PDB 86.7044%-138 - C5 -5EP0 - ? -
35 PsiBlast_CBE 86.3344% -95 - C5 -1OJL - ZRAR_SALTY -
11 PsiBlast_PDB 85.4044%-132 - C5 -5EP3 2.9 ?
10 PsiBlast_PDB 84.5444%-133 - C5 -5EP2 3.1 ?
9 PsiBlast_PDB 84.0544%-133 - C5 -5EP1 - ? -
128 HHSearch 83.8545%-129 - C5 -5EXP 3.2 ?
12 PsiBlast_PDB 83.6844%-137 - C5 -5EP4 6.7 ?
112 PsiBlast_CBE 82.8536%-100 - C5 -5M7P - ? -
125 HHSearch 82.1743%-127 - C5 -5EP1 - ? -
126 HHSearch 81.9743%-124 - C5 -5EP2 - ? -
39 PsiBlast_CBE 81.9151%-123 - C5 -1NY5 5.7 ?
6 PsiBlast_PDB 81.7450%-123 - C5 -3M0E - ? -
127 HHSearch 81.6345%-125 - C5 -5EXS - ? -
91 PsiBlast_CBE 81.4650%-122 - C5 -3M0E - ? -
88 PsiBlast_CBE 81.4050%-121 - C5 -3M0E - ? -
86 PsiBlast_CBE 81.0750%-123 - C5 -3M0E - ? -
90 PsiBlast_CBE 81.0550%-123 - C5 -3M0E - ? -
3 PsiBlast_PDB 80.2451%-121 - C5 -1NY5 5.8 ?
20 PsiBlast_PDB 79.3248%-124 - C5 -5EXP 3.2 ?
93 PsiBlast_CBE 79.0048%-119 - C5 -5EXS 6.4 ?
92 PsiBlast_CBE 78.2748%-121 - C5 -5EXT 7.3 ?
18 PsiBlast_PDB 76.8849%-125 - C5 -4QNR 6.1 PSPF_ECOLI
15 PsiBlast_PDB 76.4949%-119 - C5 -2C99 7.0 PSPF_ECOLI
19 PsiBlast_PDB 76.3149%-117 - C5 -2C9C 5.7 PSPF_ECOLI
7 PsiBlast_PDB 75.3747%-105 - C5 -3DZD 5.4 ?
13 PsiBlast_PDB 74.6949%-128 - C5 -2C96 7.1 PSPF_ECOLI
16 PsiBlast_PDB 74.6049%-113 - C5 -2VII 4.7 PSPF_ECOLI
14 PsiBlast_PDB 74.1049%-116 - C5 -2C98 6.2 PSPF_ECOLI
138 HHSearch 68.7654%-146 - C5 -4BS1 4.9 ?
109 PsiBlast_CBE 67.9755%-145 - C5 -4BT1 4.6 ?
111 PsiBlast_CBE 67.9055%-145 - C5 -4BS1 4.7 ?
110 PsiBlast_CBE 67.8055%-145 - C5 -4BT0 4.4 ?