@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3TYK4: (2017-12-14 )
MEKMKKIDILSRLKNAGVIAVVRGKSKEEALNACHAIIKGGLTGIELTFTVPQADQVIKELLSFYKDQPEIVIGAGTVLDAVTARLAILAGAEYIVSPSFDQETAEMCNLYQIPYLPGCMTITEIKTALKSGVDIVKLFPGSAYGPSIISAFKAPMPQVNIMPTGGVSLDNMKEWFDAGVVTVGVGGNLLAPAATGDFDKVTEVAQQYAAKMKEIKR

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

KDP_A_2(2V82)
DGOA_ECOLI
[Raw transfer]



CIT_D_4(1FQ0)
ALKH_ECOLI
[Raw transfer]



PYR_D_16(1WA3)
?
[Raw transfer]



PYR_C_15(1WA3)
?
[Raw transfer]



PYR_D_16(1WA3)
?
[Raw transfer]



PYR_E_17(1WA3)
?
[Raw transfer]



PYR_B_14(1WA3)
?
[Raw transfer]



PYR_B_4(3VCR)
?
[Raw transfer]



PYR_B_14(1WA3)
?
[Raw transfer]



PYR_A_9(1EUA)
ALKH_ECOLI
[Raw transfer]



CIT_D_4(1FWR)
ALKH_ECOLI
[Raw transfer]



PYR_A_13(1WA3)
?
[Raw transfer]



PYR_F_18(1WA3)
?
[Raw transfer]



PYR_A_3(3VCR)
?
[Raw transfer]
1 PsiBlast_PDB 96.6347%-165 - C1 -1VLW - ? -
22 PsiBlast_CBE 96.4147%-162 - C1 -1WA3 2.9 ?
2 PsiBlast_PDB 96.3047%-163 - C1 -1WA3 3.0 ?
24 PsiBlast_CBE 95.6247%-161 - C1 -1WA3 3.0 ?
25 PsiBlast_CBE 94.5447%-159 - C1 -1WA3 2.9 ?
3 PsiBlast_PDB 94.3846%-164 - C1 -5KP9 - -
23 PsiBlast_CBE 94.3747%-161 - C1 -1WA3 2.9 ?
66 HHSearch 93.8645%-168 - C1 -1WA3 2.9 ?
67 HHSearch 93.7045%-167 - C1 -1WA3 2.9 ?
21 PsiBlast_CBE 93.3047%-161 - C1 -1WA3 3.0 ?
68 HHSearch 92.5644%-172 - C1 -5KP9 - -
5 PsiBlast_PDB 79.1734%-141 - C1 -2V81 - DGOA_ECOLI -
42 Fugue 78.3532%-122 - C1 -4QCC - DGOA_ECOLI -
70 HHSearch 77.6434%-151 - C1 -2V81 - DGOA_ECOLI -
69 HHSearch 77.4634%-151 - C1 -2V82 - DGOA_ECOLI -
4 PsiBlast_PDB 77.4335%-138 - C1 -4QCC - DGOA_ECOLI -
6 PsiBlast_PDB 76.5034%-141 - C1 -2V82 3.8 DGOA_ECOLI
9 PsiBlast_PDB 75.0227%-105 - C1 -4E38 - ? -
7 PsiBlast_PDB 74.5327% 0 - C- -5IM5 - ? -
57 HHSearch 74.3427%-107 - C1 -1MXS - ALKD_PSEPU -
12 PsiBlast_PDB 68.3330% -98 - C1 -1EUA 2.8 ALKH_ECOLI
11 PsiBlast_PDB 68.0130% -99 - C1 -1FQ0 4.4 ALKH_ECOLI
10 PsiBlast_PDB 59.7132% -59 - C1 -3VCR 3.3 ?
26 PsiBlast_CBE 58.8632% -59 - C1 -3VCR 3.9 ?