@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3TZB4: (2017-12-16 )
MDKNIGGMKMIKGSIVALITPMNEEGSVDYAGLEKLIQFHLDEQTDGLLVLGTTGESSTLTQSEEEQILQLTVKKVAGRVPVIAGAGTNNTKETIEKAKHFASLGADALLVITPYYNKTSDAGLAAHFTAIAEASPIPLILYNVPSRTGMSIPIHVLVNLAEHPNIIGLKEASGDMAYVMDAARLIGEEFFLYSGNDDLILPVMSVGGSGVISVWANIQPKIVHELVKDTQDGRWQQAKEKQLNALELIHALFSETNPIPVKAAMSLLDLPSGPLRLPLVSLSKEKKKQLAQLLLKERTVEK

Atome Classification :

(63 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_6(3SI9)
DAPA_BARHE
[Raw transfer]




GOL_B_12(3DAQ)
DAPA_STAAR
[Raw transfer]




PGO_B_9(3NOE)
DAPA_PSEAE
[Raw transfer]




GOL_D_17(3DAQ)
DAPA_STAAR
[Raw transfer]




GOL_C_14(3DAQ)
DAPA_STAAR
[Raw transfer]




GOL_B_14(3I7R)
DAPA_ECOLI
[Raw transfer]




MES_A_8(3VFL)
?
[Raw transfer]




3OH_B_4(3S8H)
DAPA_PSEAE
[Raw transfer]




3OH_B_4(3S8H)
DAPA_PSEAE
[Raw transfer]




PYR_A_3(3RK8)
?
[Raw transfer]




GOL_B_8(3TAK)
?
[Raw transfer]




GOL_D_10(4I7U)
DAPA_AGRFC
[Raw transfer]




GOL_B_8(3TAK)
?
[Raw transfer]




PYR_B_11(3RK8)
?
[Raw transfer]




GOL_A_4(4ICN)
?
[Raw transfer]




GOL_A_3(3TAK)
?
[Raw transfer]




GOL_B_12(3DAQ)
DAPA_STAAR
[Raw transfer]




GOL_B_11(3I7S)
DAPA_ECOLI
[Raw transfer]




GOL_D_17(3DAQ)
DAPA_STAAR
[Raw transfer]




GOL_B_10(3G0S)
DAPA_SALTY
[Raw transfer]




GOL_B_9(3I7Q)
DAPA_ECOLI
[Raw transfer]




GOL_B_22(3FLU)
DAPA_NEIMB
[Raw transfer]




GOL_B_8(4ICN)
?
[Raw transfer]




GOL_B_4(3DI0)
DAPA_STAAC
[Raw transfer]




GOL_B_11(5T26)
DAPA_ECOLI
[Raw transfer]




MES_B_12(3VFL)
?
[Raw transfer]




GOL_B_8(3PUD)
?
[Raw transfer]




GOL_B_13(3I7R)
DAPA_ECOLI
[Raw transfer]




LYS_B_5(3PUE)
?
[Raw transfer]




GOL_A_3(3DI0)
DAPA_STAAC
[Raw transfer]




OXM_B_6(3UQN)
?
[Raw transfer]




OXM_A_4(3UQN)
?
[Raw transfer]




PYR_B_4(3DI1)
DAPA_STAAC
[Raw transfer]




PYR_A_3(3DI1)
DAPA_STAAC
[Raw transfer]




2KT_B_4(3TDF)
?
[Raw transfer]




GOL_B_22(3FLU)
DAPA_NEIMB
[Raw transfer]




2KT_A_3(3TDF)
?
[Raw transfer]




GOL_B_9(3I7Q)
DAPA_ECOLI
[Raw transfer]




GOL_B_19(3I7S)
DAPA_ECOLI
[Raw transfer]




3OH_A_3(3S8H)
DAPA_PSEAE
[Raw transfer]




EDO_A_6(3SI9)
DAPA_BARHE
[Raw transfer]




3VN_A_8(5F1V)
DAPA_CAMJE
[Raw transfer]




3VN_B_13(5F1V)
DAPA_CAMJE
[Raw transfer]




3VN_A_8(5F1V)
DAPA_CAMJE
[Raw transfer]




LYS_B_6(3PUL)
?
[Raw transfer]




DLY_A_7(2ATS)
DAPA_ECOLI
[Raw transfer]




LYS_B_7(4PFM)
?
[Raw transfer]




DLY_A_7(2ATS)
DAPA_ECOLI
[Raw transfer]




LYS_B_9(5T25)
DAPA_ECOLI
[Raw transfer]




LYS_A_3(5T25)
DAPA_ECOLI
[Raw transfer]




EDO_B_14(5F1U)
DAPA_CAMJE
[Raw transfer]




139 HHSearch 92.8746% -98 - C5 -4PFM 3.4 ?
4 PsiBlast_PDB 91.6448%-104 - C5 -4PFM - ? -
39 PsiBlast_CBE 91.4342%-101 - C5 -3FLU - DAPA_NEIMB -
3 PsiBlast_PDB 91.4248%-100 - C5 -4ICN 2.8 ?
1 PsiBlast_PDB 91.4245%-104 - C5 -3IRD - ? -
16 PsiBlast_PDB 91.2142%-107 - C5 -3QZE - DAPA_PSEAE -
66 PsiBlast_CBE 91.1942%-107 - C5 -3S8H 2.3 DAPA_PSEAE
134 HHSearch 90.9341% -96 - C5 -3FLU - DAPA_NEIMB -
25 PsiBlast_CBE 90.8548%-102 - C5 -4PFM - ? -
24 PsiBlast_CBE 90.8348% -99 - C5 -4ICN 3.1 ?
29 PsiBlast_CBE 90.8242%-103 - C5 -3TDF 3.2 ?
68 PsiBlast_CBE 90.8142%-110 - C5 -3PUO - DAPA_PSEAE -
7 PsiBlast_PDB 90.8042%-101 - C5 -3PUL - ? -
71 PsiBlast_CBE 90.7842%-109 - C5 -3NOE - DAPA_PSEAE -
69 PsiBlast_CBE 90.7842%-111 - C5 -3PS7 - DAPA_PSEAE -
17 PsiBlast_PDB 90.7842% -99 - C5 -3FLU - DAPA_NEIMB -
138 HHSearch 90.7741%-106 - C5 -3QZE - DAPA_PSEAE -
148 HHSearch 90.7542% -99 * C5 *3U8G - ? -
70 PsiBlast_CBE 90.7042%-107 - C5 -3PS7 - DAPA_PSEAE -
133 HHSearch 90.5441% -93 - C5 -3FLU 2.1 DAPA_NEIMB
136 HHSearch 90.4041%-105 - C5 -3S8H 3.6 DAPA_PSEAE
147 HHSearch 90.3942% -98 - C5 -3TAK 2.8 ?
32 PsiBlast_CBE 90.3542%-101 - C5 -3RK8 2.1 ?
8 PsiBlast_PDB 90.2442%-101 - C5 -3RK8 2.8 ?
72 PsiBlast_CBE 90.2142%-107 - C5 -3NOE Error DAPA_PSEAE
86 PsiBlast_CBE 90.1340%-109 - C5 -5T25 3.3 DAPA_ECOLI
41 PsiBlast_CBE 90.1342%-101 - C5 -3FLU 2.1 DAPA_NEIMB
65 PsiBlast_CBE 90.1042%-107 - C5 -3S8H 3.6 DAPA_PSEAE
33 PsiBlast_CBE 90.0042%-101 - C5 -3PUL 2.6 ?
85 PsiBlast_CBE 89.8240%-105 - C5 -5T25 3.5 DAPA_ECOLI
42 PsiBlast_CBE 89.6041%-109 - C5 -3G0S 2.3 DAPA_SALTY
11 PsiBlast_PDB 89.3742% -97 - C5 -3TDF 3.1 ?
31 PsiBlast_CBE 89.3142% -99 - C5 -3TAK 2.8 ?
51 PsiBlast_CBE 89.2240%-103 - C5 -3I7R 3.2 DAPA_ECOLI
35 PsiBlast_CBE 89.2142% -98 - C5 -3PUD 2.1 ?
34 PsiBlast_CBE 89.1842% -98 - C5 -3PUE 2.3 ?
9 PsiBlast_PDB 89.1442% -98 - C5 -3TAK 2.1 ?
53 PsiBlast_CBE 89.1340%-107 - C5 -3I7Q 3.2 DAPA_ECOLI
27 PsiBlast_CBE 89.1342%-101 - C5 -3UQN 2.8 ?
13 PsiBlast_PDB 89.0742%-100 - C5 -3UQN 2.8 ?
44 PsiBlast_CBE 88.9741%-102 - C5 -2ATS 4.1 DAPA_ECOLI
52 PsiBlast_CBE 88.8340%-104 - C5 -3I7R Error DAPA_ECOLI
50 PsiBlast_CBE 88.6340%-104 - C5 -3I7S 2.7 DAPA_ECOLI
54 PsiBlast_CBE 88.3440%-105 - C5 -3I7Q 2.1 DAPA_ECOLI
91 PsiBlast_CBE 88.2340%-108 - C5 -5T26 3.3 DAPA_ECOLI
49 PsiBlast_CBE 88.2240%-102 - C5 -3I7S 2.2 DAPA_ECOLI
60 PsiBlast_CBE 85.0543% -72 - C5 -3DI1 3.5 DAPA_STAAC
115 PsiBlast_CBE 84.7338% -67 - C5 -3SI9 2.2 DAPA_BARHE
59 PsiBlast_CBE 84.3643% -67 - C5 -3DI1 3.3 DAPA_STAAC
62 PsiBlast_CBE 84.3043% -73 - C5 -3DI0 3.3 DAPA_STAAC
61 PsiBlast_CBE 84.2943% -71 - C5 -3DI0 2.8 DAPA_STAAC
87 PsiBlast_CBE 84.0143% -71 - C5 -3DAQ 2.5 DAPA_STAAR
90 PsiBlast_CBE 83.9643% -71 - C5 -3DAQ Error DAPA_STAAR
113 PsiBlast_CBE 83.9038% -69 - C5 -3SI9 Error DAPA_BARHE
89 PsiBlast_CBE 83.9043% -70 - C5 -3DAQ 2.3 DAPA_STAAR
88 PsiBlast_CBE 83.8043% -69 - C5 -3DAQ Error DAPA_STAAR
93 PsiBlast_CBE 82.1640% -70 - C5 -4I7U 2.2 DAPA_AGRFC
111 PsiBlast_CBE 81.7739% -23 - C5 -5F1V 2.9 DAPA_CAMJE
109 PsiBlast_CBE 81.3939% -25 - C5 -5F1V 3.2 DAPA_CAMJE
64 PsiBlast_CBE 80.9740% -54 - C5 -3VFL 2.5 ?
107 PsiBlast_CBE 80.7939% -20 - C5 -5F1U 2.9 DAPA_CAMJE
63 PsiBlast_CBE 80.6440% -58 - C5 -3VFL 2.9 ?
108 PsiBlast_CBE 80.4239% -25 - C5 -5F1V 3.2 DAPA_CAMJE