@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U1T4: (2017-12-21 )
MKMQAKEVVDQVTMKRALTRITYEIIERNHSIQDIVLVGIKTRGIYIASRIAERLKQLEDIDIPVGELDITLYRDDKKENPEEPELHSSDIPVSLEGKEVILIDDVLYTGRTIRAAMDAVMDFGRPRKISLAVLVDRGHRELPIRADYVGKNIPTSRAEEILVEMQELDGQDRIMILKEED

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5GP_C_10(4P86)
?
[Raw transfer]




5GP_B_7(4P86)
?
[Raw transfer]




5GP_A_5(4P86)
?
[Raw transfer]




U5P_D_8(4P83)
?
[Raw transfer]




5GP_D_11(4P86)
?
[Raw transfer]




U5P_C_7(4P83)
?
[Raw transfer]




U5P_A_5(4P83)
?
[Raw transfer]




U5P_B_6(4P83)
?
[Raw transfer]




U5P_A_3(2IGB)
PYRR_BACCL
[Raw transfer]




U5P_B_4(2IGB)
PYRR_BACCL
[Raw transfer]




U5P_B_7(1XZ8)
PYRR_BACCL
[Raw transfer]




5GP_A_5(1XZ8)
PYRR_BACCL
[Raw transfer]




GOL_A_4(4P84)
?
[Raw transfer]




GOL_C_8(4P81)
?
[Raw transfer]




3GP_A_6(1XZ8)
PYRR_BACCL
[Raw transfer]




URF_F_9(5IAO)
PYRR_MYCTU
[Raw transfer]




24 PsiBlast_CBE 91.3962%-146 - C2 -2IGB 6.3 PYRR_BACCL
32 PsiBlast_CBE 90.0460%-151 - C2 -4P83 7.4 ?
13 PsiBlast_PDB 88.8960%-159 - C2 -4P83 5.2 ?
6 PsiBlast_PDB 88.4762%-148 - C2 -2IGB 6.5 PYRR_BACCL
33 PsiBlast_CBE 88.1260%-151 - C2 -4P83 5.3 ?
1 PsiBlast_PDB 86.9865%-156 * C2 *4P81 - ? -
5 PsiBlast_PDB 86.4762%-167 - C2 -1XZN - PYRR_BACCL -
4 PsiBlast_PDB 86.4562%-158 - C2 -1XZ8 4.9 PYRR_BACCL
34 PsiBlast_CBE 86.3560%-153 - C2 -4P83 5.6 ?
11 PsiBlast_PDB 86.1057%-137 - C2 -1A4X - PYRR_BACSU -
22 PsiBlast_CBE 85.7965%-154 - C2 -4P81 2.8 ?
7 PsiBlast_PDB 85.6161%-155 - C2 -4P80 - ? -
3 PsiBlast_PDB 84.7562%-160 - C2 -1NON - PYRR_BACCL -
26 PsiBlast_CBE 84.4262%-158 - C2 -1XZ8 4.8 PYRR_BACCL
28 PsiBlast_CBE 82.6557% -74 - C2 -4P86 6.7 ?
10 PsiBlast_PDB 81.6857% -69 - C2 -4P86 7.1 ?
14 PsiBlast_PDB 81.5155%-148 - C2 -1UFR - PYRR_THET8 -
2 PsiBlast_PDB 81.5164% -64 - C2 -4P3K - ? -
29 PsiBlast_CBE 81.0957% -68 - C2 -4P86 6.9 ?
12 PsiBlast_PDB 80.0957%-129 - C2 -1A3C - PYRR_BACSU -
126 HHSearch 79.3259% -63 - C2 -4P84 2.8 ?
30 PsiBlast_CBE 78.9057% -76 - C2 -4P86 6.5 ?