@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U4C3: (2017-12-26 )
MYTIMEIINYLFGGISMKQKIAVLGPGSWGTALAQTLAENGHDVRIWGNVPEQIDEINKYHTNQHFLPDLTIPESIIGYKELAEAVDNADAILFVVPTKAIRSVAQELIGKMNTKPIIIHASKGLEQDTHKRISEVLAEEIPEEKRQAIVVLSGPSHAEEVAVHDITTITAASIDQKAAAYVQKLFMNDYFRIYTNNDVIGVETGAALKNIIAIGAGAIHGLGFGDDAKAAIMTRGLAEISRLGVAMGANPLTFIGLSGVGDLIVTCTSVHSRNWRAGNLLGQGHKLEEVLENMGMVVEGVATTKAAVELAQQLGVEMPITQTIYNVLYNGEDIKKAAKEIMLRDGKMENEFSLR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDE_C_3(1N1E)
GPDA_LEIME
[Raw transfer]



NDE_D_4(1N1E)
GPDA_LEIME
[Raw transfer]



NDP_A_3(1Z82)
?
[Raw transfer]



NAD_C_3(1EVZ)
GPDA_LEIME
[Raw transfer]



G3P_B_6(1Z82)
?
[Raw transfer]



G3P_B_6(1Z82)
?
[Raw transfer]
54 HHSearch 78.8631% - - C1 -4FGW - GPD1_YEAST -
15 PsiBlast_PDB 76.0429% - - C1 -4FGW - GPD1_YEAST -
21 PsiBlast_CBE 74.8936%-111 - C1 -3K96 - GPDA_COXBU -
2 PsiBlast_PDB 74.5236%-109 - C1 -3K96 - GPDA_COXBU -
55 HHSearch 71.1936% -77 - C1 -3K96 - GPDA_COXBU -
56 HHSearch 70.5536% -75 - C1 -3K96 - GPDA_COXBU -
53 HHSearch 70.1941%-112 - C1 -1Z82 4.7 ?
49 HHSearch 68.0034% -44 * C1 *1N1E - GPDA_LEIME -
50 HHSearch 67.5534% -46 - C1 -1EVY - GPDA_LEIME -
7 PsiBlast_PDB 66.2234% -50 - C1 -1M67 - GPDA_LEIME -
69 Fugue 66.1333% -42 - C1 -1EVY - GPDA_LEIME -
4 PsiBlast_PDB 65.8934% -47 - C1 -1EVZ 6.2 GPDA_LEIME
22 PsiBlast_CBE 65.7934% -45 - C1 -1N1E 12.8 GPDA_LEIME
8 PsiBlast_PDB 65.7734% -46 - C1 -1N1E 12.1 GPDA_LEIME
9 PsiBlast_PDB 65.6534% -45 - C1 -1N1G - GPDA_LEIME -
3 PsiBlast_PDB 65.2134% -48 - C1 -1EVY - GPDA_LEIME -
5 PsiBlast_PDB 64.9334% -47 - C1 -1JDJ - GPDA_LEIME -
6 PsiBlast_PDB 64.8734% -46 - C1 -1M66 - GPDA_LEIME -
1 PsiBlast_PDB 62.7439% -29 - C1 -1Z82 10.1 ?
51 HHSearch 58.9430% 4 - C1 -1WPQ - GPDA_HUMAN -