@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U4H2: (2017-12-27 )
MGKFQVIDHPLIQHKLTIIRDKNCGTKVFREVVDEIAMLMAYEVSRDMPLEDIVIETPITETTQKTLSGKKVAIIPILRAGIGMVDGILELIPAAKVGHIGLYRDEETLEPHEYFVKLPEDIDARQLFVVDPMLATGGSAIMAIDALKERGASNIKFVCLVAAPEGVKALQEAHPDIDIYTASLDEKLNEHGYIVPGLGDAGDRLFGTK

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U5P_C_3(1I5E)
UPP_BACCL
[Raw transfer]




U5P_C_3(1I5E)
UPP_BACCL
[Raw transfer]




U5P_D_4(1I5E)
UPP_BACCL
[Raw transfer]




U5P_B_11(1UPU)
UPP_TOXGO
[Raw transfer]




U5P_B_11(1UPU)
UPP_TOXGO
[Raw transfer]




U5P_D_9(1UPU)
UPP_TOXGO
[Raw transfer]




U5P_Q_17(1O5O)
UPP_THEMA
[Raw transfer]




U5P_O_15(1O5O)
UPP_THEMA
[Raw transfer]




U5P_A_12(1UPU)
UPP_TOXGO
[Raw transfer]




U5P_N_14(1O5O)
UPP_THEMA
[Raw transfer]




U5P_N_14(1O5O)
UPP_THEMA
[Raw transfer]




PRP_A_4(1VST)
UPP_SULSO
[Raw transfer]




U5P_P_16(1O5O)
UPP_THEMA
[Raw transfer]




U5P_C_10(1UPU)
UPP_TOXGO
[Raw transfer]




PRP_B_16(1JLS)
UPP_TOXGO
[Raw transfer]




URA_A_16(1BD4)
UPP_TOXGO
[Raw transfer]




URA_D_18(1JLS)
UPP_TOXGO
[Raw transfer]




URA_C_14(1BD4)
UPP_TOXGO
[Raw transfer]




URF_B_19(1UPF)
UPP_TOXGO
[Raw transfer]




URA_B_15(1BD4)
UPP_TOXGO
[Raw transfer]




URA_B_15(1JLS)
UPP_TOXGO
[Raw transfer]




URA_A_17(1JLS)
UPP_TOXGO
[Raw transfer]




URA_C_19(1JLS)
UPP_TOXGO
[Raw transfer]




HSX_C_13(3G6W)
UPP_SULSO
[Raw transfer]




URA_D_13(1BD4)
UPP_TOXGO
[Raw transfer]




URF_A_20(1UPF)
UPP_TOXGO
[Raw transfer]




URF_D_17(1UPF)
UPP_TOXGO
[Raw transfer]




URF_C_18(1UPF)
UPP_TOXGO
[Raw transfer]




HSX_D_18(3G6W)
UPP_SULSO
[Raw transfer]




POP_C_14(3G6W)
UPP_SULSO
[Raw transfer]




POP_B_12(3G6W)
UPP_SULSO
[Raw transfer]




ACY_I_9(1XTT)
UPP_SULSO
[Raw transfer]




ACY_J_10(1XTT)
UPP_SULSO
[Raw transfer]




1 PsiBlast_PDB 96.4772%-169 - C3 -1I5E 5.6 UPP_BACCL
21 PsiBlast_CBE 96.1572%-168 - C3 -1I5E 5.6 UPP_BACCL
85 HHSearch 90.4873%-101 - C3 -1I5E 5.6 UPP_BACCL
88 HHSearch 90.1058%-167 - C3 -1O5O 6.8 UPP_THEMA
2 PsiBlast_PDB 89.7857%-167 - C3 -1O5O 6.8 UPP_THEMA
3 PsiBlast_PDB 89.5056%-172 - C3 -1V9S - UPP_THET2 -
22 PsiBlast_CBE 88.6057%-166 - C3 -1O5O 6.4 UPP_THEMA
23 PsiBlast_CBE 88.4757%-161 - C3 -1O5O 6.6 UPP_THEMA
24 PsiBlast_CBE 88.4057%-165 - C3 -1O5O 6.3 UPP_THEMA
5 PsiBlast_PDB 85.7553%-153 - C3 -2EHJ - UPP_ECOLI -
95 HHSearch 85.5857% -90 - C3 -3DMP - UPP_BURPS -
94 HHSearch 84.9257% -82 - C3 -1V9S - UPP_THET2 -
4 PsiBlast_PDB 84.0756%-110 - C3 -3DMP - UPP_BURPS -
96 HHSearch 83.8957% -85 - C3 -3DMP - UPP_BURPS -
92 HHSearch 83.5846%-158 - C3 -5E38 - UPP_MYCTU -
91 HHSearch 80.8953% -83 - C3 -2EHJ - UPP_ECOLI -
31 PsiBlast_CBE 79.4135%-114 - C3 -1UPU 4.9 UPP_TOXGO
7 PsiBlast_PDB 78.4638%-151 - C3 -2E55 - UPP_AQUAE -
42 PsiBlast_CBE 77.7635%-115 - C3 -1JLR - UPP_TOXGO -
32 PsiBlast_CBE 76.9335%-110 - C3 -1UPU 4.8 UPP_TOXGO
38 PsiBlast_CBE 76.8935%-109 - C3 -1JLS 3.0 UPP_TOXGO
45 PsiBlast_CBE 76.7535%-108 - C3 -1BD4 3.2 UPP_TOXGO
8 PsiBlast_PDB 76.5635%-109 - C3 -1UPU 4.4 UPP_TOXGO
36 PsiBlast_CBE 76.5235%-104 - C3 -1UPF 3.3 UPP_TOXGO
33 PsiBlast_CBE 76.3635%-107 - C3 -1UPU 5.5 UPP_TOXGO
34 PsiBlast_CBE 76.1835%-110 - C3 -1UPF 2.9 UPP_TOXGO
39 PsiBlast_CBE 76.1535%-111 - C3 -1JLS 3.3 UPP_TOXGO
43 PsiBlast_CBE 76.1035%-111 - C3 -1BD4 3.9 UPP_TOXGO
37 PsiBlast_CBE 75.8335%-107 - C3 -1JLS 3.1 UPP_TOXGO
97 HHSearch 75.4435% -79 * C3 *1UPU 4.8 UPP_TOXGO
35 PsiBlast_CBE 75.3135%-109 - C3 -1UPF 2.8 UPP_TOXGO
11 PsiBlast_PDB 74.9735%-102 - C3 -1BD4 2.9 UPP_TOXGO
9 PsiBlast_PDB 74.7835%-111 - C3 -1UPF 4.3 UPP_TOXGO
44 PsiBlast_CBE 74.3035%-103 - C3 -1BD4 2.3 UPP_TOXGO
12 PsiBlast_PDB 73.6635%-103 - C3 -1JLS 2.9 UPP_TOXGO
50 PsiBlast_CBE 72.5533% -57 - C3 -3G6W 3.5 UPP_SULSO
49 PsiBlast_CBE 71.1033% -39 - C3 -3G6W 3.1 UPP_SULSO
51 PsiBlast_CBE 70.6733% -56 - C3 -3G6W 3.2 UPP_SULSO