@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U5N4: (2017-12-29 )
MHKGWSGHFFCAQNEKGSEKMAEITLEFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSHTIHYGHIVDPKSNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLREGARLAEPGEFTKRAFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNIDYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEPVFSISVAKNDGLDRLESAISDLFFSGETGERDATYVSNTRHIALLEKASLSLEEVIAGIDSGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_A_5(3R9X)
ERA_AQUAE
[Raw transfer]



GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]



GCP_B_6(3GEI)
MNME_CHLTE
[Raw transfer]



GDP_A_2(3GEH)
MNME_NOSS1
[Raw transfer]



GCP_A_4(3GEI)
MNME_CHLTE
[Raw transfer]



GDP_A_2(3GEE)
MNME_CHLTE
[Raw transfer]



GDP_C_19(2GJ9)
MNME_ECOLI
[Raw transfer]



GDP_A_20(2GJ8)
MNME_ECOLI
[Raw transfer]



GDP_A_17(2GJ9)
MNME_ECOLI
[Raw transfer]



GDP_B_10(2GJA)

[Raw transfer]



GDP_B_18(2GJ9)
MNME_ECOLI
[Raw transfer]



GDP_A_9(2GJA)
MNME_ECOLI
[Raw transfer]



GDP_D_20(2GJ9)

[Raw transfer]
68 Fugue 78.9341% -21 - C3 -1XZP - MNME_THEMA -
49 HHSearch 78.5141% -24 - C3 -1XZP - MNME_THEMA -
3 PsiBlast_PDB 77.9642% -35 - C3 -1XZQ - ? -
2 PsiBlast_PDB 77.6342% -25 - C3 -1XZP - MNME_THEMA -
1 PsiBlast_PDB 72.3744% 24 - C3 -3GEH 6.6 MNME_NOSS1
48 HHSearch 72.3343% 25 - C3 -3GEH - MNME_NOSS1 -
5 PsiBlast_PDB 70.9539% 16 - C3 -3GEI 6.6 MNME_CHLTE
46 HHSearch 69.9437% -1 - C3 -3GEI - MNME_CHLTE -
21 PsiBlast_CBE 69.8539% 11 - C3 -3GEI 6.5 MNME_CHLTE
47 HHSearch 68.7937% 3 - C3 -3GEE - MNME_CHLTE -
4 PsiBlast_PDB 68.5439% 23 - C3 -3GEE 5.5 MNME_CHLTE
64 HHSearch 47.4432% -97 - C3 -1MKY - DER_THEMA -
55 HHSearch 43.3422% -86 - C3 -4B43 - IF2_THET8 -
23 PsiBlast_CBE 41.9347%-133 - C3 -1XZQ - ? -
58 HHSearch 38.2631% 15 - C3 -3IEV - ERA_AQUAE -
11 PsiBlast_PDB 37.7232% -82 - C3 -1MKY - DER_THEMA -
28 PsiBlast_CBE 37.5831% -50 - C3 -4KYU - DER_BACSU -
56 HHSearch 37.3031% 15 * C3 *3R9X - ERA_AQUAE -
40 PsiBlast_CBE 37.1134%-136 - C3 -1PUJ - RBGA_BACSU -
29 PsiBlast_CBE 36.8031% -49 - C3 -5X4B - ? -
24 PsiBlast_CBE 36.7343% -55 - C3 -2GJA 7.8
25 PsiBlast_CBE 36.7043% -54 - C3 -2GJ9 6.9
9 PsiBlast_PDB 36.5443% -55 - C3 -2GJ8 7.7 MNME_ECOLI
27 PsiBlast_CBE 35.9643% -57 - C3 -2GJ9 7.2 MNME_ECOLI
7 PsiBlast_PDB 35.6843% -51 - C3 -2GJ9 7.3 MNME_ECOLI
26 PsiBlast_CBE 35.1443% -52 - C3 -2GJ9 7.5 MNME_ECOLI
8 PsiBlast_PDB 33.7743% -53 - C3 -2GJA 7.6 MNME_ECOLI