@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XX46: (2018-01-02 )
MIISTITEAIGSTPLYRFDNQHYSMPKGSAIYAKLEYLNPGGSIKDRLGSYLIKEGFAQGKINEKTTIIEPTAGNTGIGIALAALTYKLRTVFVVPEKFSLEKQQLMKALGAKIIHSPSEQGIIGAISKSKKLAEEISNSYLPLQFENKDNPAAYYHTLGPEIFHEIKENIHSFVAGIGSGGTFAGTSTFLKEKYPDIRIIGVEPEGSVLNGGDPAPHEIEGIGVEFIPPFLSPLSINQIETISDVEGFNYTRQLAREQGLLVGSSSGAAFAAALREIRRLPPGHRVVTIFPDAADRYLSKNIYL

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

KOU_A_3(3PC4)
?
[Raw transfer]




P1T_A_3(3PC3)
?
[Raw transfer]




P1T_A_3(3PC3)
?
[Raw transfer]




4AT_A_4(2EFY)
?
[Raw transfer]




4AT_B_6(2EFY)
?
[Raw transfer]




CYS_A_2(4LMB)
?
[Raw transfer]




ILE_A_3(4IL5)
?
[Raw transfer]




AWH_A_3(3ZEI)
CYSK_MYCTU
[Raw transfer]




CYS_B_11(3BM5)
?
[Raw transfer]




4MV_A_3(2ECO)
?
[Raw transfer]




PLP_A_3(4L0D)
CBS_HUMAN
[Raw transfer]




FGA_B_11(4AIR)
?
[Raw transfer]




PLP_B_5(4L0D)
CBS_HUMAN
[Raw transfer]




PLP_B_7(4LMA)
?
[Raw transfer]




PLP_A_5(4LMA)
?
[Raw transfer]




PLP_A_3(2EFY)
?
[Raw transfer]




PLP_A_3(4AEC)
CYSKM_ARATH
[Raw transfer]




PLP_A_5(4LMA)
?
[Raw transfer]




PLP_A_3(1Z7W)
CYSK1_ARATH
[Raw transfer]




PLP_A_3(1Z7W)
CYSK1_ARATH
[Raw transfer]




PLP_B_6(3VBE)
?
[Raw transfer]




PLP_A_3(4AEC)
CYSKM_ARATH
[Raw transfer]




PLP_B_5(4AEC)
CYSKM_ARATH
[Raw transfer]




PLP_A_4(4LMB)
?
[Raw transfer]




PLP_A_3(1OAS)
CYSK_SALTY
[Raw transfer]




PLP_A_4(4LMB)
?
[Raw transfer]




PLP_A_5(3VBE)
?
[Raw transfer]




PLP_A_7(2ISQ)
CYSK1_ARATH
[Raw transfer]




OAS_B_3(5HBG)
CYSM_HELPY
[Raw transfer]




PLP_A_7(2ISQ)
CYSK1_ARATH
[Raw transfer]




PLP_D_8(3VBE)
?
[Raw transfer]




FGA_B_10(4AIR)
?
[Raw transfer]




MPD_A_6(2Q3B)
CYSK_MYCTU
[Raw transfer]




CYS_A_3(4LMB)
?
[Raw transfer]




3HL_A_3(2ECQ)
?
[Raw transfer]




MPD_A_6(2Q3B)
CYSK_MYCTU
[Raw transfer]




MPD_A_4(2Q3B)
CYSK_MYCTU
[Raw transfer]




123 HHSearch 93.1370% -55 - C4 -5HBG - CYSM_HELPY -
2 PsiBlast_PDB 93.1370% -55 - C4 -5HBG - CYSM_HELPY -
21 PsiBlast_CBE 92.5570% -51 - C4 -5HBG 1.9 CYSM_HELPY
30 PsiBlast_CBE 86.7657% -62 - C4 -5B1H - ? -
4 PsiBlast_PDB 86.7657% -61 - C4 -5B1H - ? -
127 HHSearch 85.6658% -60 - C4 -5B1H - ? -
31 PsiBlast_CBE 84.7557% -61 - C4 -5B1H - ? -
3 PsiBlast_PDB 84.2557% -61 - C4 -5B1I - ? -
1 PsiBlast_PDB 83.8370% - - C4 -4R2V - CYSM_HELPY -
19 PsiBlast_PDB 76.4340% -52 - C4 -2Q3C - CYSK_MYCTU -
18 PsiBlast_PDB 76.0440% -50 - C4 -2Q3B 2.4 CYSK_MYCTU
133 HHSearch 75.3841% -49 - C4 -2Q3B 2.4 CYSK_MYCTU
17 PsiBlast_PDB 75.1940% -49 - C4 -2Q3D - CYSK_MYCTU -
137 HHSearch 74.8441% -48 - C4 -2Q3D - CYSK_MYCTU -
16 PsiBlast_PDB 74.3440% -53 - C4 -3ZEI 5.9 CYSK_MYCTU
90 PsiBlast_CBE 73.1536% -46 - C4 -2JC3 - CYSM_SALTY -
135 HHSearch 72.7641% -86 - C4 -2EGU - ? -
87 PsiBlast_CBE 72.1236% -44 - C4 -2JC3 - CYSM_SALTY -
89 PsiBlast_CBE 72.0736% -41 - C4 -2JC3 - CYSM_SALTY -
5 PsiBlast_PDB 71.7645% -46 - C4 -4OFX - ? -
97 PsiBlast_CBE 68.4438% 3 - C4 -3VBE 4.0 ?
99 PsiBlast_CBE 68.0038% 2 - C4 -3VBE 4.4 ?
100 PsiBlast_CBE 67.9738% 0 - C4 -3VBE 4.0 ?
131 HHSearch 66.4039% -3 * C4 *2ISQ 4.0 CYSK1_ARATH
73 PsiBlast_CBE 65.8339% 11 - C4 -2EFY 2.7 ?
138 HHSearch 65.4439% -3 - C4 -1Z7W 3.9 CYSK1_ARATH
38 PsiBlast_CBE 65.1037% 3 - C4 -4L0D 4.9 CBS_HUMAN
8 PsiBlast_PDB 65.0837% 2 - C4 -4L0D 3.5 CBS_HUMAN
80 PsiBlast_CBE 64.6838% 15 - C4 -2ISQ 4.0 CYSK1_ARATH
142 HHSearch 64.5138% -1 - C4 -4AEC 4.4 CYSKM_ARATH
145 Fugue 64.3339% 29 - C4 -3PC3 8.3 ?
74 PsiBlast_CBE 63.8339% 8 - C4 -2EFY 3.5 ?
75 PsiBlast_CBE 63.6639% 13 - C4 -2ECQ 3.1 ?
76 PsiBlast_CBE 63.6439% 11 - C4 -2ECO 3.1 ?
140 HHSearch 63.4538% 6 - C4 -4LMB 4.1 ?
143 HHSearch 63.3638% 1 - C4 -4LMA 4.1 ?
65 PsiBlast_CBE 63.1538% 3 - C4 -4LMA 4.4 ?
71 PsiBlast_CBE 62.9538% 12 - C4 -4AEC 4.2 CYSKM_ARATH
66 PsiBlast_CBE 62.8638% 3 - C4 -4LMA 4.1 ?
79 PsiBlast_CBE 62.8138% 16 - C4 -1Z7W 3.9 CYSK1_ARATH
72 PsiBlast_CBE 61.5938% 17 - C4 -4AEC 4.4 CYSKM_ARATH
70 PsiBlast_CBE 61.5337% 6 - C4 -4LMB 4.1 ?
109 PsiBlast_CBE 59.2636% 24 - C4 -3BM5 2.9 ?
147 Fugue 57.5335% 36 - C4 -1OAS 3.9 CYSK_SALTY