@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XZY7: (2018-01-18 )
MKNKFRKIVGTIAILTASILLSACGNSGSADDSTGYVGIAMPTKSAERWIADGNNMVSELEKLGYKTDLQYGEDKVENQVAQIENMITKGVDTLVIASIDGSALTDVLAKAKEADIKVIAYDRLLMNSENVDYYATFDNFGVGVSQAAYIEEHLGLKEGKGPFTIELFGGSPDDNNALINYNGVMSVLQPYMDNGQLVVPSGQTSFSQIATLRWDGSTAQARMDNLLSANYTDQTLDAVLSPYDPISLGIISSLKGVGYGSESKPLPVITGQDATVAGVKSIIAGEQTQTIFKDTRILAKNTIEMIKAISDGEEVPVNDTETYDNGVKTVPTYLANTVSVDKDNYQAELIDTDYYKESDLKN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BDP_B_4(3UUG)
CHVE_AGRFC
[Raw transfer]



BDP_B_4(3UUG)
CHVE_AGRFC
[Raw transfer]



BDP_A_3(3UUG)
CHVE_AGRFC
[Raw transfer]



GAL_A_3(3URM)
CHVE_AGRFC
[Raw transfer]



GAL_B_4(3URM)
CHVE_AGRFC
[Raw transfer]



GAL_B_4(3URM)
CHVE_AGRFC
[Raw transfer]



XYP_A_4(3MA0)
XYLF_ECOLI
[Raw transfer]



XYP_A_4(3MA0)
XYLF_ECOLI
[Raw transfer]



BGC_A_4(4YS6)
?
[Raw transfer]



BGC_A_4(4YS6)
?
[Raw transfer]



BGC_A_3(4RXU)
?
[Raw transfer]



BGC_A_3(4RXU)
?
[Raw transfer]



XYP_B_5(3MA0)
XYLF_ECOLI
[Raw transfer]



XYP_C_6(3MA0)
XYLF_ECOLI
[Raw transfer]



XYP_A_3(4YWH)
?
[Raw transfer]



XYP_A_2(3M9X)
XYLF_ECOLI
[Raw transfer]
2 PsiBlast_PDB 82.1166% -81 - C1 -3UUG 4.8 CHVE_AGRFC
22 PsiBlast_CBE 82.1066% -79 - C1 -3URM 5.0 CHVE_AGRFC
1 PsiBlast_PDB 81.7166% -83 - C1 -3URM 5.0 CHVE_AGRFC
21 PsiBlast_CBE 81.3666% -79 - C1 -3UUG 5.1 CHVE_AGRFC
44 HHSearch 80.7366% -53 - C1 -3URM 5.0 CHVE_AGRFC
43 HHSearch 80.2166% -53 - C1 -3UUG 5.1 CHVE_AGRFC
41 HHSearch 80.1463% -71 - C1 -4WWH - ? -
3 PsiBlast_PDB 79.9263% -76 - C1 -4WWH - ? -
4 PsiBlast_PDB 71.5948% -46 - C1 -4YS6 5.5 ?
42 HHSearch 69.6148% -24 - C1 -4YS6 5.5 ?
7 PsiBlast_PDB 61.7237% -70 - C1 -3MA0 4.6 XYLF_ECOLI
23 PsiBlast_CBE 61.4937% -73 - C1 -3MA0 4.5 XYLF_ECOLI
48 HHSearch 61.2138% -72 * C1 *3MA0 4.6 XYLF_ECOLI
47 HHSearch 61.1238% -82 - C1 -3M9W - XYLF_ECOLI -
5 PsiBlast_PDB 61.0237% -80 - C1 -3M9W - XYLF_ECOLI -
25 PsiBlast_CBE 60.2232% -14 - C1 -4RXU 4.9 ?
24 PsiBlast_CBE 59.8837% -70 - C1 -3MA0 4.2 XYLF_ECOLI
53 HHSearch 59.8334% -26 - C1 -4RXU 4.9 ?
6 PsiBlast_PDB 59.8337% -78 - C1 -3M9X 2.1 XYLF_ECOLI
8 PsiBlast_PDB 58.9534% -73 - C1 -4YWH 3.2 ?