@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y1D2: (2018-01-25 )
MSLQTEIINELGVKPTIDPKEEIRKSIDFMKAYLKKYPFLKTFVLGISGGQDSTLAGRLAQLTMEEMREETKDENYQFIAVRLPYGEQADEEDAKAALDFIQPDVSLRVNIKPAVDAQVQVLSEAGVGISDFNKGNIKARQRMITQYAVAGERAGAVLGTDHAAENITGFFTKFGDGGADILPLFRLDKRQGKQLLQALNAPEKLYTKIPTADLEDGKPMIADEVALGVTYNEIDDYLEGKEVPAQAQEKIEAWWNKTQHKRHLPISVLDDFWK

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADJ_B_19(1KQP)
NADE_BACSU
[Raw transfer]




ADJ_B_19(1KQP)
NADE_BACSU
[Raw transfer]




ADJ_A_18(1KQP)
NADE_BACSU
[Raw transfer]




ATP_A_6(1EE1)
NADE_BACSU
[Raw transfer]




APC_A_5(2PZ8)
NADE_BACAN
[Raw transfer]




APC_A_6(1IH8)
NADE_BACSU
[Raw transfer]




APC_B_6(2PZ8)
NADE_BACAN
[Raw transfer]




AMP_A_4(1FYD)
NADE_BACSU
[Raw transfer]




AMP_A_8(2PZA)
NADE_BACAN
[Raw transfer]




AMP_A_5(1WXI)
NADE_ECOLI
[Raw transfer]




AMP_B_7(2PZA)
NADE_BACAN
[Raw transfer]




AMP_A_5(1WXI)
NADE_ECOLI
[Raw transfer]




NAD_B_10(2NSY)
NADE_BACSU
[Raw transfer]




NAD_A_8(2NSY)
NADE_BACSU
[Raw transfer]




NAD_A_8(2NSY)
NADE_BACSU
[Raw transfer]




AMP_C_17(3FIU)
?
[Raw transfer]




DND_C_3(1IFX)
NADE_BACSU
[Raw transfer]




AMP_B_12(3FIU)
?
[Raw transfer]




AMP_A_7(3FIU)
?
[Raw transfer]




AMP_B_12(3FIU)
?
[Raw transfer]




DND_A_4(1EE1)
NADE_BACSU
[Raw transfer]




DND_B_5(1EE1)
NADE_BACSU
[Raw transfer]




ATP_A_6(1NSY)
NADE_BACSU
[Raw transfer]




ATP_A_6(1NSY)
NADE_BACSU
[Raw transfer]




NAD_A_2(5F23)
NADE_PSEAE
[Raw transfer]




ATP_B_5(1NSY)
NADE_BACSU
[Raw transfer]




NAD_A_2(5F23)
NADE_PSEAE
[Raw transfer]




DND_D_4(1IFX)
NADE_BACSU
[Raw transfer]




NAD_B_2(1WXH)
NADE_ECOLI
[Raw transfer]




MES_A_3(5F23)
NADE_PSEAE
[Raw transfer]




1 PsiBlast_PDB 90.8872% -69 - C4 -5HUH - ? -
2 PsiBlast_PDB 90.7772% -74 - C4 -5HUJ - ? -
8 PsiBlast_PDB 86.3765% -62 - C4 -3HMQ - NADE_SALTY -
7 PsiBlast_PDB 85.9064% -71 - C4 -1WXI 4.5 NADE_ECOLI
3 PsiBlast_PDB 85.7364% -79 - C4 -1WXE - NADE_ECOLI -
6 PsiBlast_PDB 85.2364% -80 - C4 -1WXH 6.8 NADE_ECOLI
5 PsiBlast_PDB 84.5264% -78 - C4 -1WXG - NADE_ECOLI -
4 PsiBlast_PDB 84.2864% -80 - C4 -1WXF - NADE_ECOLI -
70 HHSearch 83.5372% -12 - C4 -5HUH - ? -
71 HHSearch 82.8072% -15 - C4 -5HUJ - ? -
18 PsiBlast_PDB 77.6854% -17 - C4 -4Q16 - NADE_DEIRA -
10 PsiBlast_PDB 77.4559% 6 - C4 -2NSY 7.2 NADE_BACSU
15 PsiBlast_PDB 77.4359% 6 - C4 -1KQP 6.7 NADE_BACSU
55 Fugue 77.2760% 3 - C4 -2NSY 7.2 NADE_BACSU
19 PsiBlast_PDB 77.0452% -30 - C4 -3Q4G - NADE_VIBCH -
31 PsiBlast_CBE 76.9659% -5 - C4 -2PZ8 7.1 NADE_BACAN
14 PsiBlast_PDB 76.8059% 2 - C4 -1IH8 6.5 NADE_BACSU
25 PsiBlast_CBE 76.7759% 5 - C4 -1KQP 7.2 NADE_BACSU
65 HHSearch 76.6163% -1 - C4 -1WXI 4.5 NADE_ECOLI
64 HHSearch 76.3063% 4 - C4 -3HMQ - NADE_SALTY -
30 PsiBlast_CBE 76.0959% -4 - C4 -2PZA 4.1 NADE_BACAN
23 PsiBlast_CBE 76.0159% 5 - C4 -2NSY 6.2 NADE_BACSU
11 PsiBlast_PDB 76.0159% 4 - C4 -1EE1 7.1 NADE_BACSU
68 HHSearch 75.8160% 1 * C4 *1KQP 7.2 NADE_BACSU
24 PsiBlast_CBE 75.4559% 5 - C4 -1NSY 3.9 NADE_BACSU
17 PsiBlast_PDB 75.3159% -5 - C4 -2PZA 4.4 NADE_BACAN
16 PsiBlast_PDB 75.3159% -1 - C4 -2PZ8 7.2 NADE_BACAN
9 PsiBlast_PDB 75.1659% 4 - C4 -1NSY 3.9 NADE_BACSU
12 PsiBlast_PDB 75.1259% 4 - C4 -1FYD 4.3 NADE_BACSU
69 HHSearch 74.9260% -1 - C4 -1NSY 3.9 NADE_BACSU
28 PsiBlast_CBE 74.3059% -18 - C4 -1EE1 5.8 NADE_BACSU
27 PsiBlast_CBE 73.6659% -19 - C4 -1IFX 6.1 NADE_BACSU
13 PsiBlast_PDB 71.7159% -13 - C4 -1IFX 6.1 NADE_BACSU
35 PsiBlast_CBE 70.3451% 2 - C4 -5F23 6.6 NADE_PSEAE
76 HHSearch 66.8851% 11 - C4 -5F23 6.6 NADE_PSEAE
78 HHSearch 59.5638% -9 - C4 -3FIU 4.4 ?
38 PsiBlast_CBE 58.2037% 13 - C4 -3FIU 4.6 ?
40 PsiBlast_CBE 56.6937% 15 - C4 -3FIU 4.2 ?
39 PsiBlast_CBE 55.8537% 15 - C4 -3FIU 4.6 ?