@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y1W7: (2018-01-28 )
MRYNSIAKVRKLIRRSVLLLKFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQIDLDLPGYYQYWNYAERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLEPGLADAKIHTDIMGSDHCPVELDLK

Atome Classification :

(56 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_Y_8(4B5G)
?
[Raw transfer]
-
NACID_W_6(4B5G)
?
[Raw transfer]
-
NACID_M_5(4B5M)
?
[Raw transfer]
-
NACID_N_6(4B5M)
?
[Raw transfer]
-
BCN_A_3(2JC5)
?
[Raw transfer]



BCN_A_3(2JC5)
?
[Raw transfer]



PEG_A_10(3W2Y)
?
[Raw transfer]



NACID_V_5(1DE9)
APEX1_HUMAN
[Raw transfer]
-
PG4_A_3(5J8N)
?
[Raw transfer]



NACID_U_3(1DE8)
APEX1_HUMAN
[Raw transfer]
-
PG4_A_3(5J8N)
?
[Raw transfer]



NACID_P_3(5DG0)
APEX1_HUMAN
[Raw transfer]
-
NACID_P_3(5DFJ)
APEX1_HUMAN
[Raw transfer]
-
NACID_U_3(1DE8)
APEX1_HUMAN
[Raw transfer]
-
NACID_P_3(5DFI)
APEX1_HUMAN
[Raw transfer]
-
NACID_L_11(4IEM)
APEX1_HUMAN
[Raw transfer]
-
NACID_Y_8(4B5G)
?
[Raw transfer]
-
PEG_A_5(5CFE)
EXOA_BACSU
[Raw transfer]



PEG_A_5(5CFE)
EXOA_BACSU
[Raw transfer]



NACID_D_3(5DFH)
APEX1_HUMAN
[Raw transfer]
-
NACID_D_3(5DFF)
APEX1_HUMAN
[Raw transfer]
-
EDO_A_2(4QHD)
APEX1_HUMAN
[Raw transfer]



NACID_I_7(4IEM)
APEX1_HUMAN
[Raw transfer]
-
NACID_O_15(4IEM)
APEX1_HUMAN
[Raw transfer]
-
NACID_X_1(1DE8)
APEX1_HUMAN
[Raw transfer]
-
NACID_F_3(4IEM)
APEX1_HUMAN
[Raw transfer]
-
FMT_A_13(3W2Y)
?
[Raw transfer]



NACID_L_4(4B5M)
?
[Raw transfer]
-
NACID_H_3(3G4T)
?
[Raw transfer]
-
GOL_A_15(3G2D)
?
[Raw transfer]



FMT_A_5(3W2X)
?
[Raw transfer]



NACID_H_5(3GA6)
?
[Raw transfer]
-
NACID_Y_2(1DE9)
APEX1_HUMAN
[Raw transfer]
-
GOL_A_10(3G0R)
?
[Raw transfer]



NACID_X_1(1DEW)
APEX1_HUMAN
[Raw transfer]
-
NACID_H_3(3G00)
?
[Raw transfer]
-
NACID_N_6(4B5M)
?
[Raw transfer]
-
NACID_H_3(3G4T)
?
[Raw transfer]
-
NACID_N_6(4B5M)
?
[Raw transfer]
-
NACID_U_3(1DEW)
APEX1_HUMAN
[Raw transfer]
-
FMT_A_5(3W2Y)
?
[Raw transfer]



FMT_A_5(3W2Y)
?
[Raw transfer]



NACID_X_4(4B5I)
?
[Raw transfer]
-
NACID_H_3(3G00)
?
[Raw transfer]
-
NACID_I_4(3G3C)
?
[Raw transfer]
-
NACID_K_4(3G2D)
?
[Raw transfer]
-
NACID_G_2(3G38)
?
[Raw transfer]
-
NACID_I_6(3G2D)
?
[Raw transfer]
-
NACID_G_3(3G0R)
?
[Raw transfer]
-
NACID_G_3(3G0R)
?
[Raw transfer]
-
EDO_A_11(5DG0)
APEX1_HUMAN
[Raw transfer]



NACID_I_4(3G3C)
?
[Raw transfer]
-
NACID_I_3(3G2C)
?
[Raw transfer]
-
MPD_A_9(3G00)
?
[Raw transfer]



MPD_B_12(3G00)
?
[Raw transfer]
1 PsiBlast_PDB 82.9058% -22 - C1 -5CFE 2.2 EXOA_BACSU
98 HHSearch 82.2157% -20 - C1 -5CFE 2.2 EXOA_BACSU
99 HHSearch 79.1840%-112 - C1 -5EWT - ? -
38 PsiBlast_CBE 76.8546% -7 - C1 -5DFF - APEX1_HUMAN -
36 PsiBlast_CBE 76.7546% -4 - C1 -5DG0 - APEX1_HUMAN -
12 PsiBlast_PDB 76.1646% 6 - C1 -4LND - APEX1_HUMAN -
37 PsiBlast_CBE 76.1446% -4 - C1 -5DFI - APEX1_HUMAN -
42 PsiBlast_CBE 75.5846% 9 - C1 -1DEW 3.3 APEX1_HUMAN
39 PsiBlast_CBE 75.5746% 6 - C1 -1DE9 5.6 APEX1_HUMAN
20 PsiBlast_PDB 75.0546% 10 - C1 -1BIX - APEX1_HUMAN -
44 PsiBlast_CBE 75.0045% 3 - C1 -5DFJ 8.2 APEX1_HUMAN
17 PsiBlast_PDB 74.9846% 4 - C1 -5CFG - APEX1_HUMAN -
14 PsiBlast_PDB 74.9446% 3 - C1 -5DFH 5.5 APEX1_HUMAN
41 PsiBlast_CBE 74.8446% 5 - C1 -1DEW 5.9 APEX1_HUMAN
16 PsiBlast_PDB 74.6146% 6 - C1 -5DG0 8.6 APEX1_HUMAN
30 PsiBlast_CBE 74.4546% 9 - C1 -4IEM 6.2 APEX1_HUMAN
2 PsiBlast_PDB 74.4452% 9 - C1 -2O3C - APEX1_DANRE -
8 PsiBlast_PDB 74.3846% -2 - C1 -3U8U - APEX1_HUMAN -
10 PsiBlast_PDB 74.2246% 7 - C1 -4IEM 7.6 APEX1_HUMAN
19 PsiBlast_PDB 74.1446% 9 - C1 -1DE9 7.4 APEX1_HUMAN
40 PsiBlast_CBE 74.1046% 6 - C1 -1DE8 6.0 APEX1_HUMAN
15 PsiBlast_PDB 73.9346% 7 - C1 -5DFI 8.6 APEX1_HUMAN
29 PsiBlast_CBE 73.7646% 7 - C1 -4IEM 6.4 APEX1_HUMAN
4 PsiBlast_PDB 73.7446% 12 - C1 -4QHD 2.3 APEX1_HUMAN
18 PsiBlast_PDB 73.2546% 9 - C1 -1DE8 6.2 APEX1_HUMAN
13 PsiBlast_PDB 73.2446% 5 - C1 -5DFF 5.7 APEX1_HUMAN
31 PsiBlast_CBE 72.7846% 5 - C1 -4IEM 5.8 APEX1_HUMAN
94 HHSearch 72.5044% 2 - C1 -5J8N 1.5 ?
101 HHSearch 72.0445% 10 - C1 -1DE8 6.0 APEX1_HUMAN
45 PsiBlast_CBE 70.8744% 5 - C1 -5J8N 1.5 ?
104 HHSearch 68.2642% 4 - C1 -3W2Y 2.8 ?
46 PsiBlast_CBE 68.1442% 10 - C1 -3W2X 3.1 ?
78 PsiBlast_CBE 67.4138% -4 - C1 -4B5G Error ?
97 HHSearch 67.3438% -4 - C1 -4B5M 1.6 ?
77 PsiBlast_CBE 67.2138% -2 - C1 -4B5G 5.7 ?
74 PsiBlast_CBE 67.1338% -0 - C1 -4B5M 3.0 ?
72 PsiBlast_CBE 67.0938% -1 - C1 -4B5M 1.6 ?
73 PsiBlast_CBE 67.0138% -1 - C1 -4B5M Error ?
76 PsiBlast_CBE 66.5838% -7 - C1 -4B5I 5.2 ?
81 PsiBlast_CBE 66.2638% -8 - C1 -2JC5 3.4 ?
69 PsiBlast_CBE 66.2342% 6 - C1 -3G00 4.9 ?
63 PsiBlast_CBE 66.2242% 4 - C1 -3G38 2.8 ?
51 PsiBlast_CBE 66.1542% 6 - C1 -3G3C 4.0 ?
96 HHSearch 66.1438% -11 - C1 -2JC5 3.4 ?
71 PsiBlast_CBE 66.0641% 14 - C1 -3W2Y 3.6 ?
66 PsiBlast_CBE 66.0442% 6 - C1 -3G0R 7.5 ?
52 PsiBlast_CBE 65.9842% 6 - C1 -3G3C 3.4 ?
68 PsiBlast_CBE 65.8542% 6 - C1 -3G00 2.8 ?
67 PsiBlast_CBE 65.7842% 6 - C1 -3G0R 5.8 ?
60 PsiBlast_CBE 65.7842% 8 - C1 -3GA6 4.7 ?
48 PsiBlast_CBE 65.5942% 7 - C1 -3G4T 2.7 ?
54 PsiBlast_CBE 64.9542% 6 - C1 -3G2C 2.1 ?
65 PsiBlast_CBE 64.6042% 7 - C1 -3G2D 6.2 ?
70 PsiBlast_CBE 64.5441% 18 - C1 -3W2Y 2.8 ?
64 PsiBlast_CBE 64.3842% 10 - C1 -3G2D 5.5 ?
47 PsiBlast_CBE 64.1242% 8 - C1 -3G4T 5.8 ?