@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y279: (2018-01-28 )
MKIGLIGSGQMGNRVEEVAQERGDTVLLLRTAPKEATTLAFTELPELLIDFSHPDNLEKILSYSLSYQLPLVIGTTGYTQSQFQEIKEHAKHVPVMYSANFSFGIMVMNQLIKQAAAMLQGWQIELIEKHHSRKKDAPSGTANMLLQTIQEVQKLQPVYNWQGKKREENQIGVHSIRAGSLPGEHDVLFAATDEIFTIKHESFSNRIFAAGAVEAADWLKDQSPGYYKLEDLLMDKGV

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_A_5(3IJP)
DAPB_BARHE
[Raw transfer]



NAD_E_5(1DRU)
DAPB_ECOLI
[Raw transfer]



NDP_E_5(1DIH)
DAPB_ECOLI
[Raw transfer]



NHD_E_5(1DRW)
DAPB_ECOLI
[Raw transfer]



A3D_E_5(1DRV)
DAPB_ECOLI
[Raw transfer]



NAD_B_8(1ARZ)
DAPB_ECOLI
[Raw transfer]



GOL_B_18(3QY9)
DAPB_STAAC
[Raw transfer]



PDC_D_13(1ARZ)
DAPB_ECOLI
[Raw transfer]



PDC_G_7(1P9L)
DAPB_MYCTU
[Raw transfer]



PDC_B_9(1ARZ)
DAPB_ECOLI
[Raw transfer]



PDC_C_11(1ARZ)
DAPB_ECOLI
[Raw transfer]



PDC_I_9(1C3V)
DAPB_MYCTU
[Raw transfer]



PGE_B_8(4YWJ)
DAPB_PSEAE
[Raw transfer]



PG4_C_22(1VM6)
DAPB_THEMA
[Raw transfer]



PGE_A_4(4YWJ)
DAPB_PSEAE
[Raw transfer]



PGE_A_4(4YWJ)
DAPB_PSEAE
[Raw transfer]
23 PsiBlast_CBE 82.0238% 4 - C2 -3QY9 2.9 DAPB_STAAC
1 PsiBlast_PDB 80.1038% 11 - C2 -3QY9 - DAPB_STAAC -
57 HHSearch 79.3034% -0 - C2 -4F3Y - DAPB_BURTA -
4 PsiBlast_PDB 78.7934% 6 - C2 -4F3Y - DAPB_BURTA -
47 HHSearch 78.1837% 6 - C2 -3QY9 - DAPB_STAAC -
58 HHSearch 76.3034% 1 - C2 -4F3Y - DAPB_BURTA -
48 HHSearch 75.7332% 12 - C2 -3IJP - DAPB_BARHE -
46 HHSearch 75.5637% 23 - C2 -3QY9 - DAPB_STAAC -
7 PsiBlast_PDB 75.3635% -58 - C2 -1DIH 4.8 DAPB_ECOLI
33 Fugue 75.1439% 48 - C2 -3QY9 - DAPB_STAAC -
44 HHSearch 73.9637% -0 - C2 -1VM6 - DAPB_THEMA -
8 PsiBlast_PDB 73.4035% -57 - C2 -1DRU 5.1 DAPB_ECOLI
43 HHSearch 73.3237% -1 - C2 -1VM6 - DAPB_THEMA -
45 HHSearch 73.3135% 29 * C2 *4YWJ 1.7 DAPB_PSEAE
10 PsiBlast_PDB 73.2835% -54 - C2 -1DRW 5.4 DAPB_ECOLI
9 PsiBlast_PDB 73.1935% -57 - C2 -1DRV 5.2 DAPB_ECOLI
5 PsiBlast_PDB 72.7631% 24 - C2 -3IJP 10.9 DAPB_BARHE
3 PsiBlast_PDB 72.1633% 33 - C2 -4YWJ 1.7 DAPB_PSEAE
12 PsiBlast_PDB 72.0129% -7 - C2 -1P9L 3.9 DAPB_MYCTU
11 PsiBlast_PDB 71.6629% -8 - C2 -1C3V 4.0 DAPB_MYCTU
27 PsiBlast_CBE 71.5633% 34 - C2 -4YWJ 1.7 DAPB_PSEAE
32 PsiBlast_CBE 71.5335% -53 - C2 -1ARZ 4.6 DAPB_ECOLI
31 PsiBlast_CBE 71.2835% -55 - C2 -1ARZ 3.5 DAPB_ECOLI
25 PsiBlast_CBE 71.0434% 4 - C2 -1VM6 1.8 DAPB_THEMA
30 PsiBlast_CBE 70.8935% -58 - C2 -1ARZ 4.6 DAPB_ECOLI