@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y2S0: (2018-02-01 )
MMYAIITYLLTRFTAIFHYVKTCQDMGKAKEKNSLAETPYNPSSPYSSTKAGSDLLVKAWVRSFGLRATISNCSNNYGPYQHIEKFIPRQVTNILSGIRPKLYGEGKNVRDWIHTNDHSSAVWLILTKGRIGETYLIGADGEEDNKTVMELILEMMGQPKDAYDHVNDRAGHDLRYAIDSTKLREELGWKPEFTNFRDGLADTIKWYEEHEDWWKKEKEAVEAAYAKNGQ

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DAU_F_6(1KER)
?
[Raw transfer]



DAU_G_7(1KER)
?
[Raw transfer]



NAD_H_8(1KER)
?
[Raw transfer]



NAD_B_8(1OC2)
?
[Raw transfer]



NAD_F_6(1KET)
RMLB_STRMU
[Raw transfer]



NAD_B_8(1OC2)
?
[Raw transfer]



NAD_I_9(1KER)
?
[Raw transfer]



NAD_E_5(1KET)
RMLB_STRMU
[Raw transfer]



NAD_G_7(1KEP)
RMLB_STRMU
[Raw transfer]



NAD_A_4(1OC2)
?
[Raw transfer]



NAD_I_9(1KER)
?
[Raw transfer]



NAD_F_6(1KEP)
RMLB_STRMU
[Raw transfer]



NAD_A_2(1R6D)
?
[Raw transfer]



NAD_A_2(1R6D)
?
[Raw transfer]



NAD_E_5(1KEW)
RMLB_SALTY
[Raw transfer]



NAD_F_6(1KEW)
RMLB_SALTY
[Raw transfer]



NAD_A_3(1R66)
?
[Raw transfer]



NAD_E_5(1KEU)
RMLB_SALTY
[Raw transfer]



NAD_F_6(1KEU)
RMLB_SALTY
[Raw transfer]
46 HHSearch 82.4471% 44 - C3 -1OC2 3.0 ?
47 HHSearch 82.0671% 44 - C3 -1KER 3.0 ?
5 PsiBlast_PDB 78.5048% -35 - C3 -4EGB - ? -
6 PsiBlast_PDB 76.6745% -35 - C3 -1R6D 3.0 ?
21 PsiBlast_CBE 76.4873% 73 - C3 -1OC2 2.8 ?
24 PsiBlast_CBE 76.3973% 71 - C3 -1KEP 3.0 RMLB_STRMU
23 PsiBlast_CBE 76.3673% 72 - C3 -1KER 10.2 ?
2 PsiBlast_PDB 76.3073% 67 - C3 -1KER 10.1 ?
22 PsiBlast_CBE 75.9273% 69 - C3 -1KET 2.9 RMLB_STRMU
1 PsiBlast_PDB 75.8473% 69 - C3 -1KEP 3.1 RMLB_STRMU
3 PsiBlast_PDB 75.2773% 68 - C3 -1KET 3.0 RMLB_STRMU
7 PsiBlast_PDB 75.2044% -33 - C3 -1R66 3.1 ?
4 PsiBlast_PDB 74.5573% 72 - C3 -1OC2 2.8 ?
9 PsiBlast_PDB 74.0644% -44 - C3 -2HUN - ? -
26 PsiBlast_CBE 72.9544% -38 - C3 -2HUN - ? -
8 PsiBlast_PDB 69.7142% 22 - C3 -1BXK - RMLB2_ECOLI -
25 PsiBlast_CBE 69.2542% 24 - C3 -1BXK - RMLB2_ECOLI -
45 HHSearch 68.9342% 26 - C3 -1R6D 3.5 ?
42 HHSearch 68.4843% 39 * C3 *4EGB - ? -
43 HHSearch 66.3643% 39 - C3 -4EGB - ? -
11 PsiBlast_PDB 65.7244% 7 - C3 -1KEU 2.9 RMLB_SALTY
28 PsiBlast_CBE 64.9744% 9 - C3 -1KEU 2.8 RMLB_SALTY
12 PsiBlast_PDB 64.5944% 10 - C3 -1KEW 2.3 RMLB_SALTY
27 PsiBlast_CBE 64.1544% 9 - C3 -1KEW 3.1 RMLB_SALTY