@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo1275: (2016-03-23 )
MADYLVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTENDYEPRYITIRGKGPVLKELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKLRVVFNEITKEAVKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIIDREKEINNFKPEEYWTIDGNFLKGKKKFQANFYGVNGKKKKLSTADDVKEVMSAIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLGKQGTVGLITYMRTDSTRIADSAILEASNYIKETYGPEFSRNHKRSDKNAKGAQDAHEAIRPTSAMRSPQEVKEYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDNNGVNFRANGSKIKFHGFMKVYVESNDDNTEEKENILPDLKKGDKVQSESLEQRQHFTQPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIEEYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADAEMEKIEIKDEPAGIDCDLCGAPMVYKMGKYGKFLACSRFPDCRNTKAIVKEIGVTCPKCEKGHVIERKSKKKRIFYGCDRYPDCDYVSWDKPVERACPKCEKRALVEKKLKKGVQVQCTNCDYKESTQQ
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.-------------------.-------------.-------------------.....30........40--------.--.-----.-----..-...-.50.-.--.-...--..-60........70........80........90....---....100--........110.......120.......--130.......140.......150......-.-----160.......170.......180.......190.......-200-.-......210------.......220.......----230.......240.......250.......260.......270.......280.......290.......300.......310.......320.--...---..-------.330.......340.......350--------..--......-----------360-----.......370.......380.......390...--....400.......--410--.........420.......430.......440.......450..---.....460.......470---------------.........480.......490.....-..500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MA
D
Y
L
V
I
VESPAK
A
K
T
I
E
K
Y
LG-------------------K-------------
K
-------------------
F
K
V
K
ASMG
H
V
RDL
P
K
S
---------Q--M-----G-----VD-TEN-DYEP-
R
--
Y
-
I
T
I
--RG-KG
P
V
L
K
E
L
K
Q
A
A
K
KA
K
K
V
Y
L
A
ADPDREG
E
A
I
A
W
H
LA---NSLELD---QSD
K
L
R
V
V
F
N
E
I
T
K
E
A
V
K
E
S
FKTP
R
K
I
D
--
M
D
LV
N
A
Q
Q
A
R
R
I
L
D
R
L
VGYNI
S
P
I
L
W
K
K
V
-
K
-----KGLSAGR
V
Q
S
I
A
L
R
I
I
I
DREKEINNFKP
E
E
Y
W
T
IDGNFLK-GK
K
-
K
-
F
Q
A
N
F
YGVN------GKKKKLS
T
A
D
D
V
K
E
V
M
S
----
A
IKGKSFDVTD
V
T
K
K
E
RLRNPAAPF
T
T
S
S
L
Q
Q
E
A
A
R
KLN
Y
R
T
R
K
T
M
M
L
A
Q
Q
L
Y
E
GITLGKQG
T
V
G
L
I
T
Y
M
RTDSTRI
A
D
S
A
I
L
E
A
S
N
Y
I
K
E
TYG--PEF---SR-------NHKRSDKNAKG
A
Q
D
A
H
E
AIR
P
T
S
---------AM--R
S
P
Q
E
V
-----------
K
E
Y
-----
L
T
R
D
Q
L
R
L
Y
R
L
I
W
E
R
F
I
A
S
QM
T
P
A
V
L
D
T
M
R
V
DL--DNN
G
V
N
F
R
ANG
S
K
I
--
K
----
F
H
G
F
M
K
V
Y
V
ESNDDN
T
E
E
K
E
N
ILPDLKKGDK
V
Q
S
E
S
L
E
Q
R
QHFT---QPPPR
Y
T
E
A
R
L
V
K
T
L
E
-----------------
E
IGIGRPSTYSP
T
L
D
T
I
Q
RRN
Y
V
SLTN-KRFI
P
T
E
L
G
E
I
V
N
E
M
I
E
E
Y
F
P
E
IL
D
V
K
F
TAN
M
E
S
E
L
D
E
VEHGE
V
E
W
V
K
V
I
D
E
F
Y
K
RFEP
N
V
I
KADA
E
M
E
K
I
E
IKDEPAGIDCDLCGA
P
M
V
Y
KMGKYG
K
F
L
A
CSRFPDCR
N
T
K
A
I
V
K
E
IGVTCPKCEKG
H
V
I
E
RKSKKK
R
I
F
YGCDRYPDCDYVSWDK
P
V
E
R
AC
P
K
C
E
K
R
A
L
V
E
K
K
L
KKG
V
Q
V
Q
CTNCDYKESTQQ
11
PsiBlast_PDB
92.04
41%
-62
- C4 -
1MW8
7
TOP1_ECOLI
X:
[2-584]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
A
L
V
I
V
E
S
P
A
K
A
K
T
I
N
K
Y
L
G
-------------------
S
-------------
D
-------------------
Y
V
V
K
S
S
V
G
H
I
R
D
L
P
T
S
GDERGALVN
R
--
M
-----
G
-----
V
D
-
P
W
H
-
N
W
E
A
-
H
--
Y
-
E
V
L
--
P
G
-
K
E
K
V
V
S
E
L
K
Q
L
A
E
K
A
D
H
I
Y
L
A
T
D
L
D
R
E
G
E
A
I
A
W
H
L
R
---
E
V
I
G
G
D
---
D
A
R
Y
S
R
V
V
F
N
E
I
T
K
N
A
I
R
Q
A
F
N
K
P
G
E
L
N
--
I
D
R
V
N
A
Q
Q
A
R
R
F
M
D
R
V
V
G
Y
M
V
S
P
L
L
W
K
K
I
-
A
-----
R
G
L
S
A
G
R
V
Q
S
V
A
V
R
L
V
V
E
R
E
R
E
I
K
A
F
V
P
E
E
F
W
E
V
D
A
S
T
T
T
P
S
G
E
-
A
-
L
A
L
Q
V
T
H
Q
N
------
D
K
P
F
R
P
V
N
K
E
Q
T
Q
A
A
V
S
----
L
L
E
K
A
R
Y
S
V
L
E
R
E
D
K
P
T
T
S
K
P
G
A
P
F
I
T
S
T
L
Q
Q
A
A
S
T
R
L
G
F
G
V
K
K
T
M
M
M
A
Q
R
L
Y
E
A
---------
G
Y
I
T
Y
M
R
T
D
S
T
N
L
S
Q
D
A
V
N
M
V
R
G
Y
I
S
D
N
F
G
--
K
K
Y
LPE
S
P
-------
N
Q
Y
A
S
--------
E
A
R
E
A
I
R
P
S
D
---------
V
N
--
V
M
A
E
S
L
-----------
K
D
------
M
E
A
D
A
Q
K
L
Y
Q
L
I
W
R
Q
F
V
A
C
Q
M
T
P
A
K
Y
D
S
T
T
L
T
V
--
G
A
G
D
F
R
L
K
A
R
G
R
I
L
--
R
----
F
D
G
W
T
K
V
M
P
A
--------
E
D
R
I
L
P
A
V
N
K
G
D
A
L
T
L
V
E
L
T
P
A
Q
H
F
T
---
K
P
P
A
R
F
S
E
A
S
L
V
K
E
L
E
-----------------
K
R
G
I
G
R
P
S
T
Y
A
S
I
I
S
T
I
Q
D
R
G
Y
V
R
V
E
N
-
R
R
F
Y
A
E
K
M
G
E
I
V
T
D
R
L
E
E
N
F
R
E
L
M
N
Y
D
F
T
A
Q
M
E
N
N
L
D
Q
V
A
N
H
E
A
E
W
K
A
V
L
D
H
F
F
S
D
F
T
Q
Q
L
D
K
A
E
K
D
P
E
E
-----------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
91.33
41%
-65
- C4 -
1CY6
4
TOP1_ECOLI
A:
[4-586]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
A
L
V
I
V
E
S
P
A
K
A
K
T
I
N
K
Y
L
G
-------------------
S
-------------
D
-------------------
Y
V
V
K
S
S
V
G
H
I
R
D
L
P
T
-DER
G
A
L
V
N
-
R
--
M
-----
G
-----
V
D
-
P
W
H
-
N
W
E
A
-
H
--
Y
-
E
V
L
--
P
G
-
K
E
K
V
V
S
E
L
K
Q
L
A
E
K
A
D
H
I
Y
L
A
T
D
L
D
R
E
G
E
A
I
A
W
H
L
R
---
E
V
I
G
G
D
---
D
A
R
Y
S
R
V
V
F
N
E
I
T
K
N
A
I
R
Q
A
F
N
K
P
G
E
L
N
--
I
D
R
V
N
A
Q
Q
A
R
R
F
M
D
R
V
V
G
Y
M
V
S
P
L
L
W
K
K
I
-
A
-----
R
G
L
S
A
G
R
V
Q
S
V
A
V
R
L
V
V
E
R
E
R
E
I
K
A
F
V
P
E
E
F
W
E
V
D
A
S
T
T
T
P
S
G
E
-
A
-
L
A
L
Q
V
T
H
Q
N
------
D
K
P
F
R
P
V
N
K
E
Q
T
Q
A
A
V
S
----
L
L
E
K
A
R
Y
S
V
L
E
R
E
D
K
P
T
T
S
K
P
G
A
P
F
I
T
S
T
L
Q
Q
A
A
S
T
R
L
G
F
G
V
K
K
T
M
M
M
A
Q
R
L
Y
E
A
---------
G
Y
I
T
Y
M
R
T
D
S
T
N
L
S
Q
D
A
V
N
M
V
R
G
Y
I
S
D
N
F
G
--
K
K
Y
LPE
S
P
-------
N
Q
Y
A
----------
A
H
E
A
I
R
P
S
D
---------
V
N
--
V
M
A
E
S
L
-----------
K
D
------
M
E
A
D
A
Q
K
L
Y
Q
L
I
W
R
Q
F
V
A
C
Q
M
T
P
A
K
Y
D
S
T
T
L
T
V
--
G
A
G
D
F
R
L
K
A
R
G
R
I
L
--
R
----
F
D
G
W
T
K
V
M
P
A
L
R
------
E
D
R
I
L
P
A
V
N
K
G
D
A
L
T
L
V
E
L
T
P
A
Q
H
F
T
---
K
P
P
A
R
F
S
E
A
S
L
V
K
E
L
E
-----------------
K
R
G
I
G
R
P
S
T
Y
A
S
I
I
S
T
I
Q
D
R
G
Y
V
R
V
E
N
-
R
R
F
Y
A
E
K
M
G
E
I
V
T
D
R
L
E
E
N
F
R
E
L
M
N
Y
D
F
T
A
Q
M
E
N
S
L
D
Q
V
A
N
H
E
A
E
W
K
A
V
L
D
H
F
F
S
D
F
T
Q
Q
L
D
K
A
E
K
D
P
E
E
-----------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
91.30
41%
-69
- C4 -
3PX7
3
TOP1_ECOLI
A:
[2-584]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
A
L
V
I
V
E
S
P
A
K
A
K
T
I
N
K
Y
L
G
-------------------
S
-------------
D
-------------------
Y
V
V
K
S
S
V
G
H
I
R
D
L
P
--DER
G
A
L
V
N
-
R
--
M
-----
G
-----
V
D
-
P
W
H
-
N
W
E
A
-
H
--
Y
-
E
V
L
--
P
G
-
K
E
K
V
V
S
E
L
K
Q
L
A
E
K
A
D
H
I
Y
L
A
T
N
L
D
R
E
G
E
A
I
A
W
H
L
R
---
E
V
I
G
G
D
---
D
A
R
Y
S
R
V
V
F
N
E
I
T
K
N
A
I
R
Q
A
F
N
K
P
G
E
L
N
--
I
D
R
V
N
A
Q
Q
A
R
R
F
M
D
R
V
V
G
Y
M
V
S
P
L
L
W
K
K
I
-
A
-----
R
G
L
S
A
G
R
V
Q
S
V
A
V
R
L
V
V
E
R
E
R
E
I
K
A
F
V
P
E
E
F
W
E
V
D
A
S
T
T
T
P
S
G
E
-
A
-
L
A
L
Q
V
T
H
Q
N
------
D
K
P
F
R
P
V
N
K
E
Q
T
Q
A
A
V
S
----
L
L
E
K
A
R
Y
S
V
L
E
R
E
D
K
P
T
T
S
K
P
G
A
P
F
I
T
S
T
L
Q
Q
A
A
S
T
R
L
G
F
G
V
K
K
T
M
M
M
A
Q
R
L
Y
E
A
---------
G
Y
I
T
Y
M
R
T
D
S
T
N
L
S
Q
D
A
V
N
M
V
R
G
Y
I
S
D
N
F
G
--
K
K
Y
LPE
S
P
-------
N
Q
Y
A
-----------
H
E
A
I
R
P
S
D
---------
V
N
--
V
M
A
E
S
L
-----------
K
D
------
M
E
A
D
A
Q
K
L
Y
Q
L
I
W
R
Q
F
V
A
C
Q
M
T
P
A
K
Y
D
S
T
T
L
T
V
--
G
A
G
D
F
R
L
K
A
R
G
R
I
L
--
R
----
F
D
G
W
T
K
V
M
P
A
L
R
---------
I
L
P
A
V
N
K
G
D
A
L
T
L
V
E
L
T
P
A
Q
H
F
T
---
K
P
P
A
R
F
S
E
A
S
L
V
K
E
L
E
-----------------
K
R
G
I
G
R
P
S
T
Y
A
S
I
I
S
T
I
Q
D
R
G
Y
V
R
V
E
N
-
R
R
F
Y
A
E
K
M
G
E
I
V
T
D
R
L
E
E
N
F
R
E
L
M
N
Y
D
F
T
A
Q
M
E
N
S
L
D
Q
V
A
N
H
E
A
E
W
K
A
V
L
D
H
F
F
S
D
F
T
Q
Q
L
D
K
A
E
K
D
P
E
E
-----------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
91.23
41%
-63
- C4 -
1MW9
9
TOP1_ECOLI
X:
[2-584]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
A
L
V
I
V
E
S
P
A
K
A
K
T
I
N
K
Y
L
G
-------------------
S
-------------
D
-------------------
Y
V
V
K
S
S
V
G
H
I
R
D
L
P
T
-ERGALVN--
R
--
M
-----
G
-----
V
D
-
P
W
H
-
N
W
E
A
-
H
--
Y
-
E
V
L
--
P
G
-
K
E
K
V
V
S
E
L
K
Q
L
A
E
K
A
D
H
I
Y
L
A
T
D
L
D
R
E
G
E
A
I
A
W
H
L
R
---
E
V
I
G
G
D
---
D
A
R
Y
S
R
V
V
F
N
E
I
T
K
N
A
I
R
Q
A
F
N
K
P
G
E
L
N
--
I
D
R
V
N
A
Q
Q
A
R
R
F
M
D
R
V
V
G
Y
M
V
S
P
L
L
W
K
K
I
-
A
-----
R
G
L
S
A
G
R
V
Q
S
V
A
V
R
L
V
V
E
R
E
R
E
I
K
A
F
V
P
E
E
F
W
E
V
D
A
S
T
T
T
P
S
G
E
-
A
-
L
A
L
Q
V
T
H
Q
N
------
D
K
P
F
R
P
V
N
K
E
Q
T
Q
A
A
V
S
----
L
L
E
K
A
R
Y
S
V
L
E
R
E
D
K
P
T
T
S
K
P
G
A
P
F
I
T
S
T
L
Q
Q
A
A
S
T
R
L
G
F
G
V
K
K
T
M
M
M
A
Q
R
L
Y
E
A
---------
G
Y
I
T
Y
M
R
T
D
S
T
N
L
S
Q
D
A
V
N
M
V
R
G
Y
I
S
D
N
F
G
--
K
K
Y
LPE
S
P
-------
N
Q
Y
A
-----------
R
E
A
I
R
P
S
D
---------
V
N
--
V
M
A
E
S
L
-----------
K
D
------
M
E
A
D
A
Q
K
L
Y
Q
L
I
W
R
Q
F
V
A
C
Q
M
T
P
A
K
Y
D
S
T
T
L
T
V
--
G
A
G
D
F
R
L
K
A
R
G
R
I
L
--
R
----
F
D
G
W
T
K
V
M
P
A
L
-------
E
D
R
I
L
P
A
V
N
K
G
D
A
L
T
L
V
E
L
T
P
A
Q
H
F
T
---
K
P
P
A
R
F
S
E
A
S
L
V
K
E
L
E
-----------------
K
R
G
I
G
R
P
S
T
Y
A
S
I
I
S
T
I
Q
D
R
G
Y
V
R
V
E
N
-
R
R
F
Y
A
E
K
M
G
E
I
V
T
D
R
L
E
E
N
F
R
E
L
M
N
Y
D
F
T
A
Q
M
E
N
N
L
D
Q
V
A
N
H
E
A
E
W
K
A
V
L
D
H
F
F
S
D
F
T
Q
Q
L
D
K
A
E
K
D
P
E
E
-----------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
90.89
41%
-65
- C4 -
1CY4
4
TOP1_ECOLI
A:
[4-586]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
A
L
V
I
V
E
S
P
A
K
A
K
T
I
N
K
Y
L
G
-------------------
S
-------------
D
-------------------
Y
V
V
K
S
S
V
G
H
I
R
D
L
P
T
-DER
G
A
L
V
N
-
R
--
M
-----
G
-----
V
D
-
P
W
H
-
N
W
E
A
-
H
--
Y
-
E
V
L
--
P
G
-
K
E
K
V
V
S
E
L
K
Q
L
A
E
K
A
D
H
I
Y
L
A
T
D
L
D
R
E
G
E
A
I
A
W
H
L
R
---
E
V
I
G
G
D
---
D
A
R
Y
S
R
V
V
F
N
E
I
T
K
N
A
I
R
Q
A
F
N
K
P
G
E
L
N
--
I
D
R
V
N
A
Q
Q
A
R
R
F
M
D
R
V
V
G
Y
M
V
S
P
L
L
W
K
K
I
-
A
-----
R
G
L
S
A
G
R
V
Q
S
V
A
V
R
L
V
V
E
R
E
R
E
I
K
A
F
V
P
E
E
F
W
E
V
D
A
S
T
T
T
P
S
G
E
-
A
-
L
A
L
Q
V
T
H
Q
N
------
D
K
P
F
R
P
V
N
K
E
Q
T
Q
A
A
V
S
----
L
L
E
K
A
R
Y
S
V
L
E
R
E
D
K
P
T
T
S
K
P
G
A
P
F
I
T
S
T
L
Q
Q
A
A
S
T
R
L
G
F
G
V
K
K
T
M
M
M
A
Q
R
L
Y
E
A
---------
G
Y
I
T
Y
M
R
T
D
S
T
N
L
S
Q
D
A
V
N
M
V
R
G
Y
I
S
D
N
F
G
--
K
K
Y
LPE
S
P
-------
N
Q
Y
A
-----------
H
E
A
I
R
P
S
D
---------
V
N
--
V
M
A
E
S
L
-----------
K
D
------
M
E
A
D
A
Q
K
L
Y
Q
L
I
W
R
Q
F
V
A
C
Q
M
T
P
A
K
Y
D
S
T
T
L
T
V
--
G
A
G
D
F
R
L
K
A
R
G
R
I
L
--
R
----
F
D
G
W
T
K
V
M
P
A
L
----------
I
L
P
A
V
N
K
G
D
A
L
T
L
V
E
L
T
P
A
Q
H
F
T
---
K
P
P
A
R
F
S
E
A
S
L
V
K
E
L
E
-----------------
K
R
G
I
G
R
P
S
T
Y
A
S
I
I
S
T
I
Q
D
R
G
Y
V
R
V
E
N
-
R
R
F
Y
A
E
K
M
G
E
I
V
T
D
R
L
E
E
N
F
R
E
L
M
N
Y
D
F
T
A
Q
M
E
N
S
L
D
Q
V
A
N
H
E
A
E
W
K
A
V
L
D
H
F
F
S
D
F
T
Q
Q
L
D
K
A
E
K
D
P
E
E
-----------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
90.84
41%
-62
- C4 -
3PWT
3
TOP1_ECOLI
A:
[2-584]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
A
L
V
I
V
E
S
P
A
K
A
K
T
I
N
K
Y
L
G
-------------------
S
-------------
D
-------------------
Y
V
V
K
S
S
V
G
H
I
R
D
L
P
T
-DER
G
A
L
V
N
-
R
--
M
-----
G
-----
V
D
-
P
W
H
-
N
W
E
A
-
H
--
Y
-
E
V
L
--
P
G
-
K
E
K
V
V
S
E
L
K
Q
L
A
E
K
A
D
H
I
Y
L
A
T
N
L
D
R
E
G
E
A
I
A
W
H
L
R
---
E
V
I
G
G
D
---
D
A
R
Y
S
R
V
V
F
N
E
I
T
K
N
A
I
R
Q
A
F
N
K
P
G
E
L
N
--
I
D
R
V
N
A
Q
Q
A
R
R
F
M
D
R
V
V
G
Y
M
V
S
P
L
L
W
K
K
I
-
A
-----
R
G
L
S
A
G
R
V
Q
S
V
A
V
R
L
V
V
E
R
E
R
E
I
K
A
F
V
P
E
E
F
W
E
V
D
A
S
T
T
T
P
S
G
E
-
A
-
L
A
L
Q
V
T
H
Q
N
------
D
K
P
F
R
P
V
N
K
E
Q
T
Q
A
A
V
S
----
L
L
E
K
A
R
Y
S
V
L
E
R
E
D
K
P
T
T
S
K
P
G
A
P
F
I
T
S
T
L
Q
Q
A
A
S
T
R
L
G
F
G
V
K
K
T
M
M
M
A
Q
R
L
Y
E
A
---------
G
Y
I
T
Y
M
R
T
D
S
T
N
L
S
Q
D
A
V
N
M
V
R
G
Y
I
S
D
N
F
G
--
K
K
Y
LPE
S
P
-------
N
Q
Y
A
----------
A
H
E
A
I
R
P
S
D
---------
V
N
--
V
M
A
E
S
L
-----------
K
D
------
M
E
A
D
A
Q
K
L
Y
Q
L
I
W
R
Q
F
V
A
C
Q
M
T
P
A
K
Y
D
S
T
T
L
T
V
--
G
A
G
D
F
R
L
K
A
R
G
R
I
L
--
R
----
F
D
G
W
T
K
V
M
P
A
L
R
------
E
D
R
I
L
P
A
V
N
K
G
D
A
L
T
L
V
E
L
T
P
A
Q
H
F
T
---
K
P
P
A
R
F
S
E
A
S
L
V
K
E
L
E
-----------------
K
R
G
I
G
R
P
S
T
Y
A
S
I
I
S
T
I
Q
D
R
G
Y
V
R
V
E
N
-
R
R
F
Y
A
E
K
M
G
E
I
V
T
D
R
L
E
E
N
F
R
E
L
M
N
Y
D
F
T
A
Q
M
E
N
S
L
D
Q
V
A
N
H
E
A
E
W
K
A
V
L
D
H
F
F
S
D
F
T
Q
Q
L
D
K
A
E
K
D
P
E
E
-----------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
90.83
41%
-61
- C4 -
1CY8
3
TOP1_ECOLI
A:
[4-586]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
A
L
V
I
V
E
S
P
A
K
A
K
T
I
N
K
Y
L
G
-------------------
S
-------------
D
-------------------
Y
V
V
K
S
S
V
G
H
I
R
D
L
P
--DER
G
A
L
V
N
-
R
--
M
-----
G
-----
V
D
-
P
W
H
-
N
W
E
A
-
H
--
Y
-
E
V
L
--
P
G
-
K
E
K
V
V
S
E
L
K
Q
L
A
E
K
A
D
H
I
Y
L
A
T
D
L
D
R
E
G
E
A
I
A
W
H
L
R
---
E
V
I
G
G
D
---
D
A
R
Y
S
R
V
V
F
N
E
I
T
K
N
A
I
R
Q
A
F
N
K
P
G
E
L
N
--
I
D
R
V
N
A
Q
Q
A
R
R
F
M
D
R
V
V
G
Y
M
V
S
P
L
L
W
K
K
I
-
A
-----
R
G
L
S
A
G
R
V
Q
S
V
A
V
R
L
V
V
E
R
E
R
E
I
K
A
F
V
P
E
E
F
W
E
V
D
A
S
T
T
T
P
S
G
E
-
A
-
L
A
L
Q
V
T
H
Q
N
------
D
K
P
F
R
P
V
N
K
E
Q
T
Q
A
A
V
S
----
L
L
E
K
A
R
Y
S
V
L
E
R
E
D
K
P
T
T
S
K
P
G
A
P
F
I
T
S
T
L
Q
Q
A
A
S
T
R
L
G
F
G
V
K
K
T
M
M
M
A
Q
R
L
Y
E
A
---------
G
Y
I
T
Y
M
R
T
D
S
T
N
L
S
Q
D
A
V
N
M
V
R
G
Y
I
S
D
N
F
G
--
K
K
Y
LPE
S
P
-------
N
Q
Y
A
-----------
H
E
A
I
R
P
S
D
---------
V
N
--
V
M
A
E
S
L
-----------
K
D
------
M
E
A
D
A
Q
K
L
Y
Q
L
I
W
R
Q
F
V
A
C
Q
M
T
P
A
K
Y
D
S
T
T
L
T
V
--
G
A
G
D
F
R
L
K
A
R
G
R
I
L
--
R
----
F
D
G
W
T
K
V
M
P
A
L
R
K
G
D
---
E
D
R
I
L
P
A
V
N
K
G
D
A
L
T
L
V
E
L
T
P
A
Q
H
F
T
---
K
P
P
A
R
F
S
E
A
S
L
V
K
E
L
E
-----------------
K
R
G
I
G
R
P
S
T
Y
A
S
I
I
S
T
I
Q
D
R
G
Y
V
R
V
E
N
-
R
R
F
Y
A
E
K
M
G
E
I
V
T
D
R
L
E
E
N
F
R
E
L
M
N
Y
D
F
T
A
Q
M
E
N
S
L
D
Q
V
A
N
H
E
A
E
W
K
A
V
L
D
H
F
F
S
D
F
T
Q
Q
L
D
K
A
E
K
D
P
E
E
-----------------------------------------------------------------------------------------------------------------------------
33
HHSearch
89.86
43%
-58
- C4 -
1MW9
9
TOP1_ECOLI
X:
[2-581]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
A
L
V
I
V
E
S
P
A
K
A
K
T
I
N
K
Y
L
G
-------------------
S
-------------
D
-------------------
Y
V
V
K
S
S
V
G
H
I
R
D
L
P
T
--------------------ERGAL
V
N
R
M
G
V
D
P
W
H
N
W
E
AH
Y
-
E
V
L
--
P
G
-
K
E
K
V
V
S
E
L
K
Q
L
A
E
K
A
D
H
I
Y
L
A
T
D
L
D
R
E
G
E
A
I
A
W
H
L
R
---
E
V
I
G
G
D
---
D
A
R
Y
S
R
V
V
F
N
E
I
T
K
N
A
I
R
Q
A
F
N
K
P
G
E
L
N
--
I
D
R
V
N
A
Q
Q
A
R
R
F
M
D
R
V
V
G
Y
M
V
S
P
L
L
W
K
K
I
-
A
-----
R
G
L
S
A
G
R
V
Q
S
V
A
V
R
L
V
V
E
R
E
R
E
I
K
A
F
V
P
E
E
F
W
E
V
D
A
S
T
T
T
-
P
S
G
-
E
A
L
A
L
Q
V
T
H
Q
N
------
D
K
P
F
R
P
V
N
K
E
Q
T
Q
A
A
V
S
----
L
L
E
K
A
R
Y
S
V
L
E
R
E
D
K
P
T
T
S
K
P
G
A
P
F
I
T
S
T
L
Q
Q
A
A
S
T
R
L
G
F
G
V
K
K
T
M
M
M
A
Q
R
L
Y
E
A
---------
G
Y
I
T
Y
M
R
T
D
S
T
N
L
S
Q
D
A
V
N
M
V
R
G
Y
I
S
D
N
F
G
--
K
K
Y
---
L
P
-------
E
S
P
N
Q
Y
A
--------
R
E
A
I
R
P
S
D
---------
V
N
--
V
M
A
E
S
L
-----------
K
D
------
M
E
A
D
A
Q
K
L
Y
Q
L
I
W
R
Q
F
V
A
C
Q
M
T
P
A
K
Y
D
S
T
T
L
T
V
--
G
A
G
D
F
R
L
K
A
R
G
R
I
L
--
R
----
F
D
G
W
T
K
V
M
P
A
L
-------
E
D
R
I
L
P
A
V
N
K
G
D
A
L
T
L
V
E
L
T
P
A
Q
H
F
T
---
K
P
P
A
R
F
S
E
A
S
L
V
K
E
L
E
-----------------
K
R
G
I
G
R
P
S
T
Y
A
S
I
I
S
T
I
Q
D
R
G
Y
V
R
V
E
N
-
R
R
F
Y
A
E
K
M
G
E
I
V
T
D
R
L
E
E
N
F
R
E
L
M
N
Y
D
F
T
A
Q
M
E
N
N
L
D
Q
V
A
N
H
E
A
E
W
K
A
V
L
D
H
F
F
S
D
F
T
Q
Q
L
D
K
A
E
K
D
--------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
89.74
41%
-62
- C4 -
1ECL
-
TOP1_ECOLI
A:
[2-584]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
A
L
V
I
V
E
S
P
A
K
A
K
T
I
N
K
Y
L
G
-------------------
S
-------------
D
-------------------
Y
V
V
K
S
S
V
G
H
I
R
D
L
P
--DER
G
A
L
V
N
-
R
--
M
-----
G
-----
V
D
-
P
W
H
-
N
W
E
A
-
H
--
Y
-
E
V
L
--
P
G
-
K
E
K
V
V
S
E
L
K
Q
L
A
E
K
A
D
H
I
Y
L
A
T
D
L
D
R
E
G
E
A
I
A
W
H
L
R
---
E
V
I
G
G
D
---
D
A
R
Y
S
R
V
V
F
N
E
I
T
K
N
A
I
R
Q
A
F
N
K
P
G
E
L
N
--
I
D
R
V
N
A
Q
Q
A
R
R
F
M
D
R
V
V
G
Y
M
V
S
P
L
L
W
K
K
I
-
A
-----
R
G
L
S
A
G
R
V
Q
S
V
A
V
R
L
V
V
E
R
E
R
E
I
K
A
F
V
P
E
E
F
W
E
V
D
A
S
T
T
T
P
S
G
E
-
A
-
L
A
L
Q
V
T
H
Q
N
------
D
K
P
F
R
P
V
N
K
E
Q
T
Q
A
A
V
S
----
L
L
E
K
A
R
Y
S
V
L
E
R
E
D
K
P
T
T
S
K
P
G
A
P
F
I
T
S
T
L
Q
Q
A
A
S
T
R
L
G
F
G
V
K
K
T
M
M
M
A
Q
R
L
Y
E
A
---------
G
Y
I
T
Y
M
R
T
D
S
T
N
L
S
Q
D
A
V
N
M
V
R
G
Y
I
S
D
N
F
G
--
K
K
Y
LPE
S
P
-------
N
Q
Y
A
-----------
H
E
A
I
R
P
S
D
---------
V
N
--
V
M
A
E
S
L
-----------
K
D
------
M
E
A
D
A
Q
K
L
Y
Q
L
I
W
R
Q
F
V
A
C
Q
M
T
P
A
K
Y
D
S
T
T
L
T
V
--
G
A
G
D
F
R
L
K
A
R
G
R
I
L
--
R
----
F
D
G
W
T
K
V
M
P
A
L
R
---------
I
L
P
A
V
N
K
G
D
A
L
T
L
V
E
L
T
P
A
Q
H
F
T
---
K
P
P
A
R
F
S
E
A
S
L
V
K
E
L
E
-----------------
K
R
G
I
G
R
P
S
T
Y
A
S
I
I
S
T
I
Q
D
R
G
Y
V
R
V
E
N
-
R
R
F
Y
A
E
K
M
G
E
I
V
T
D
R
L
E
E
N
F
R
E
L
M
N
Y
D
F
T
A
Q
M
E
N
S
L
D
Q
V
A
N
H
E
A
E
W
K
A
V
L
D
H
F
F
S
D
F
T
Q
Q
L
D
K
A
E
K
D
P
E
E
-----------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
89.33
42%
-60
- C4 -
2GAJ
-
TOP1_THEMA
A:
[9-586]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
V
E
S
P
A
K
A
K
T
I
K
S
I
L
G
-------------------
N
-------------
E
-------------------
Y
E
V
F
A
S
M
G
H
I
I
D
L
P
K
S
---------
K
--
F
-----
G
-----
V
D
-
L
E
K
-
D
F
E
P
-
E
--
F
-
A
V
I
--
K
G
-
K
E
K
V
V
E
K
L
K
D
L
A
K
K
G
E
-
L
L
I
A
S
D
M
D
R
E
G
E
A
I
A
W
H
I
A
R
V
T
N
T
L
-------
G
R
K
N
R
I
V
F
S
E
I
T
P
R
V
I
R
E
A
V
K
N
P
R
E
I
D
--
M
K
K
V
R
A
Q
L
A
R
R
I
L
D
R
I
V
G
Y
S
L
S
P
V
L
W
R
N
F
-
K
-----
S
N
L
S
A
G
R
V
Q
S
A
T
L
K
L
V
C
D
R
E
R
E
I
L
R
F
V
P
K
K
Y
H
R
I
T
V
N
----------
F
D
G
L
T
A
E
I
D
------
V
K
E
K
K
F
F
D
A
E
T
L
K
E
I
Q
S
ID
E
L
V
V
E
E
K
K
V
S
V
K
K
F
A
-------
P
P
E
P
F
K
T
S
T
L
Q
Q
E
A
Y
S
K
L
G
F
S
V
S
K
T
M
M
I
A
Q
Q
L
Y
E
G
V
E
T
-
K
D
G
H
I
A
F
I
T
Y
M
R
T
D
S
T
R
V
S
D
Y
A
K
E
E
A
R
N
L
I
T
E
V
F
G
--
E
E
Y
---
V
G
---------------------
A
H
E
A
I
R
P
T
N
---------
V
F
--
M
T
P
E
E
A
-----------
G
K
Y
-----
L
N
S
D
Q
K
K
L
Y
E
L
I
W
K
R
F
L
A
S
Q
M
K
P
S
Q
Y
E
E
T
R
F
V
L
--
R
T
K
D
G
K
Y
R
F
K
G
T
V
L
--
K
K
I--
F
D
G
Y
E
K
V
W
------
K
T
E
R
N
T
G
E
F
P
-
F
E
E
G
E
S
V
K
P
V
V
V
K
I
E
E
Q
E
T
---
K
P
K
P
R
Y
T
E
G
S
L
V
K
E
M
E
-----------------
R
L
G
I
G
R
P
S
T
Y
A
S
T
I
K
L
L
L
N
R
G
Y
I
K
K
I
R
-
G
Y
L
Y
P
T
I
V
G
S
V
V
M
D
Y
L
E
K
K
Y
S
D
V
V
S
V
S
F
T
A
E
M
E
K
D
L
D
E
V
E
Q
G
K
K
T
D
K
I
V
L
R
E
F
Y
E
S
F
S
S
V
F
D
R
N
D
----
R
I
-
V
V
D
F
P
T
N
Q
K
C
S
-
C
G
K
E
M
R
L
S
F
G
K
Y
G
F
Y
L
K
C
----
E
C
G
K
T
R
S
V
---------------------------------------------------------------------------------
9
PsiBlast_PDB
88.70
42%
-62
- C4 -
2GAI
-
TOP1_THEMA
A:
[9-586]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
V
E
S
P
A
K
A
K
T
I
K
S
I
L
G
-------------------
N
-------------
E
-------------------
Y
E
V
F
A
S
M
G
H
I
I
D
L
P
K
S
---------
K
--
F
-----
G
-----
V
D
-
L
E
K
-
D
F
E
P
-
E
--
F
-
A
V
I
--
K
G
-
K
E
K
V
V
E
K
L
K
D
L
A
K
K
G
E
-
L
L
I
A
S
D
M
D
R
E
G
E
A
I
A
W
H
I
A
R
V
T
N
T
L
-------
G
R
K
N
R
I
V
F
S
E
I
T
P
R
V
I
R
E
A
V
K
N
P
R
E
I
D
--
M
K
K
V
R
A
Q
L
A
R
R
I
L
D
R
I
V
G
Y
S
L
S
P
V
L
W
R
N
F
-
K
-----
S
N
L
S
A
G
R
V
Q
S
A
T
L
K
L
V
C
D
R
E
R
E
I
L
R
F
V
P
K
K
Y
H
R
I
T
V
N
----------
F
D
G
L
T
A
E
I
D
------
V
K
E
K
K
F
F
D
A
E
T
L
K
E
I
Q
S
ID
E
L
V
V
E
E
K
K
V
S
V
K
K
F
A
-------
P
P
E
P
F
K
T
S
T
L
Q
Q
E
A
Y
S
K
L
G
F
S
V
S
K
T
M
M
I
A
Q
Q
L
Y
E
G
V
E
T
-
K
D
G
H
I
A
F
I
T
Y
M
R
T
D
S
T
R
V
S
D
Y
A
K
E
E
A
R
N
L
I
T
E
V
F
G
--
E
E
Y
---
V
G
---------------------
A
H
E
A
I
R
P
T
N
---------
V
F
--
M
T
P
E
E
A
-----------
G
K
Y
-----
L
N
S
D
Q
K
K
L
Y
E
L
I
W
K
R
F
L
A
S
Q
M
K
P
S
Q
Y
E
E
T
R
F
V
L
--
R
T
K
D
G
K
Y
R
F
K
G
T
V
L
--
K
K
I--
F
D
G
Y
E
K
V
W
------
K
T
E
R
N
T
G
E
F
P
-
F
E
E
G
E
S
V
K
P
V
V
V
K
I
E
E
Q
E
T
---
K
P
K
P
R
Y
T
E
G
S
L
V
K
E
M
E
-----------------
R
L
G
I
G
R
P
S
T
Y
A
S
T
I
K
L
L
L
N
R
G
Y
I
K
K
I
R
-
G
Y
L
Y
P
T
I
V
G
S
V
V
M
D
Y
L
E
K
K
Y
S
D
V
V
S
V
S
F
T
A
E
M
E
K
D
L
D
E
V
E
Q
G
K
K
T
D
K
I
V
L
R
E
F
Y
E
S
F
S
S
V
F
D
R
N
D
----
R
I
-
V
V
D
F
P
T
N
Q
K
C
S
-
C
G
K
E
M
R
L
S
F
G
K
Y
G
F
Y
L
K
C
----
E
C
G
K
T
R
S
V
---------------------------------------------------------------------------------
2
PsiBlast_PDB
88.63
41%
-63
- C4 -
1CY2
3
TOP1_ECOLI
A:
[4-586]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
A
L
V
I
V
E
S
P
A
K
A
K
T
I
N
K
Y
L
G
-------------------
S
-------------
D
-------------------
Y
V
V
K
S
S
V
G
H
I
R
D
L
P
--DER
G
A
L
V
N
-
R
--
M
-----
G
-----
V
D
-
P
W
H
-
N
W
E
A
-
H
--
Y
-
E
V
L
--
P
G
-
K
E
K
V
V
S
E
L
K
Q
L
A
E
K
A
D
H
I
Y
L
A
T
D
L
D
R
E
G
E
A
I
A
W
H
L
R
---
E
V
I
G
G
D
---
D
A
R
Y
S
R
V
V
F
N
E
I
T
K
N
A
I
R
Q
A
F
N
K
P
G
E
L
N
--
I
D
R
V
N
A
Q
Q
A
R
R
F
M
D
R
V
V
G
Y
M
V
S
P
L
L
W
K
K
I
-
A
-----
R
G
L
S
A
G
R
V
Q
S
V
A
V
R
L
V
V
E
R
E
R
E
I
K
A
F
V
P
E
E
F
W
E
V
D
A
S
T
T
T
P
S
G
E
-
A
-
L
A
L
Q
V
T
H
Q
N
------
D
K
P
F
R
P
V
N
K
E
Q
T
Q
A
A
V
S
----
L
L
E
K
A
R
Y
S
V
L
E
R
E
D
K
P
T
T
S
K
P
G
A
P
F
I
T
S
T
L
Q
Q
A
A
S
T
R
L
G
F
G
V
K
K
T
M
M
M
A
Q
R
L
Y
E
A
---------
G
Y
I
T
Y
M
R
T
D
S
T
N
L
S
Q
D
A
V
N
M
V
R
G
Y
I
S
D
N
F
G
--
K
K
Y
LPE
S
P
-------
N
Q
Y
A
----------
A
H
E
A
I
R
P
S
D
---------
V
N
--
V
M
A
E
S
L
-----------
K
D
------
M
E
A
D
A
Q
K
L
Y
Q
L
I
W
R
Q
F
V
A
C
Q
M
T
P
A
K
Y
D
S
T
T
L
T
V
--
G
A
G
D
F
R
L
K
A
R
G
R
I
L
--
R
----
F
D
G
W
T
K
V
M
P
A
L
R
---------
I
L
P
A
V
N
K
G
D
A
L
T
L
V
E
L
T
P
A
Q
H
F
T
---
K
P
P
A
R
F
S
E
A
S
L
V
K
E
L
E
-----------------
K
R
G
I
G
R
P
S
T
Y
A
S
I
I
S
T
I
Q
D
R
G
Y
V
R
V
E
N
-
R
R
F
Y
A
E
K
M
G
E
I
V
T
D
R
L
E
E
N
F
R
E
L
M
N
Y
D
F
T
A
Q
M
E
N
S
L
D
Q
V
A
N
H
E
A
E
W
K
A
V
L
D
H
F
F
S
D
F
T
Q
Q
L
D
K
A
E
K
D
P
E
E
-----------------------------------------------------------------------------------------------------------------------------
31
HHSearch
88.60
42%
-53
- C4 -
2GAI
-
TOP1_THEMA
A:
[7-601]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
I
V
V
E
S
P
A
K
A
K
T
I
K
S
I
L
G
-------------------
N
-------------
E
-------------------
Y
E
V
F
A
S
M
G
H
I
I
D
L
P
K
S
---------
K
--
F
-----
G
-----
V
D
-
L
E
K
-
D
F
E
P
-
E
--
F
-
A
V
I
--
K
G
-
K
E
K
V
V
E
K
L
K
D
L
A
K
K
-
G
E
L
L
I
A
S
D
M
D
R
E
G
E
A
I
A
W
H
I
A
---
R
V
T
N
T
L
----
G
R
K
N
R
I
V
F
S
E
I
T
P
R
V
I
R
E
A
V
K
N
P
R
E
I
D
--
M
K
K
V
R
A
Q
L
A
R
R
I
L
D
R
I
V
G
Y
S
L
S
P
V
L
W
R
N
F
-
K
-----
S
N
L
S
A
G
R
V
Q
S
A
T
L
K
L
V
C
D
R
E
R
E
I
L
R
F
V
P
K
K
Y
H
R
I
T
V
N
F
D
G
-
L
T
A
-
E
-
I
D
--
V
K
-----------
E
K
K
F
F
D
A
E
T
L
K
E
I
Q
S
-------
I
D
E
L
V
V
E
E
K
K
V
S
V
K
K
F
A
P
P
E
P
F
K
T
S
T
L
Q
Q
E
A
Y
S
K
L
G
F
S
V
S
K
T
M
M
I
A
Q
Q
L
Y
E
G
V
E
T
K
-
D
G
H
I
A
F
I
T
Y
M
R
T
D
S
T
R
V
S
D
Y
A
K
E
E
A
R
N
L
I
T
E
V
F
G
--
E
E
Y
---
V
G
---------------------
A
H
E
A
I
R
P
T
N
---------
V
F
--
M
T
P
E
E
A
-----------
G
K
Y
-----
L
N
S
D
Q
K
K
L
Y
E
L
I
W
K
R
F
L
A
S
Q
M
K
P
S
Q
Y
E
E
T
R
F
V
L
--
R
T
K
D
G
K
Y
R
F
K
G
T
V
L
K
K
I
----
F
D
G
Y
E
K
V
W
K
T
E
R
N
-------
T
G
E
F
P
F
E
E
G
E
S
V
K
P
V
V
V
K
I
E
E
Q
E
T
---
K
P
K
P
R
Y
T
E
G
S
L
V
K
E
M
E
-----------------
R
L
G
I
G
R
P
S
T
Y
A
S
T
I
K
L
L
L
N
R
G
Y
I
K
K
I
R
-
G
Y
L
Y
P
T
I
V
G
S
V
V
M
D
Y
L
E
K
K
Y
S
D
V
V
S
V
S
F
T
A
E
M
E
K
D
L
D
E
V
E
Q
G
K
K
T
D
K
I
V
L
R
E
F
Y
E
S
F
S
S
V
F
D
R
N
D
R
I
V
-----
V
D
F
P
T
N
Q
K
C
S
-
C
G
K
E
M
R
L
S
F
G
K
Y
G
F
Y
L
K
C
E
----
C
G
K
T
R
S
V
K
N
---------
D
E
I
A
V
----
I
D
D
G
K
I
F
L
-----------------------------------------------------
5
PsiBlast_PDB
88.51
41%
-63
- C4 -
1CY0
1
TOP1_ECOLI
A:
[4-574]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
A
L
V
I
V
E
S
P
A
K
A
K
T
I
N
K
Y
L
G
-------------------
S
-------------
D
-------------------
Y
V
V
K
S
S
V
G
H
I
R
D
L
P
--A
L
V
N
-----
R
--
M
-----
G
-----
V
D
-
P
W
H
-
N
W
E
A
-
H
--
Y
-
E
V
L
--
P
G
-
K
E
K
V
V
S
E
L
K
Q
L
A
E
K
A
D
H
I
Y
L
A
T
D
L
D
R
E
G
E
A
I
A
W
H
L
R
---
E
V
I
G
G
D
---
D
A
R
Y
S
R
V
V
F
N
E
I
T
K
N
A
I
R
Q
A
F
N
K
P
G
E
L
N
--
I
D
R
V
N
A
Q
Q
A
R
R
F
M
D
R
V
V
G
Y
M
V
S
P
L
L
W
K
K
I
-
A
-----
R
G
L
S
A
G
R
V
Q
S
V
A
V
R
L
V
V
E
R
E
R
E
I
K
A
F
V
P
E
E
F
W
E
V
D
A
S
T
T
T
P
S
G
E
-
A
-
L
A
L
Q
V
T
H
Q
N
------
D
K
P
F
R
P
V
N
K
E
Q
T
Q
A
A
V
S
----
L
L
E
K
A
R
Y
S
V
L
E
R
E
D
K
P
T
T
S
K
P
G
A
P
F
I
T
S
T
L
Q
Q
A
A
S
T
R
L
G
F
G
V
K
K
T
M
M
M
A
Q
R
L
Y
E
A
---------
G
Y
I
T
Y
M
R
T
D
S
T
N
L
S
Q
D
A
V
N
M
V
R
G
Y
I
S
D
N
F
G
--
K
K
Y
LPE
S
P
-------
N
Q
Y
A
S
K
E
N
---
S
Q
E
A
H
E
A
I
R
P
S
D
---------
V
N
--
V
M
A
E
S
L
-----------
K
D
------
M
E
A
D
A
Q
K
L
Y
Q
L
I
W
R
Q
F
V
A
C
Q
M
T
P
A
K
Y
D
S
T
T
L
T
V
--
G
A
G
D
F
R
L
K
A
R
G
R
I
L
--
R
----
F
D
G
W
T
K
V
M
-------------
I
L
P
A
V
N
K
G
D
A
L
T
L
V
E
L
T
P
A
Q
H
F
T
---
K
P
P
A
R
F
S
E
A
S
L
V
K
E
L
E
-----------------
K
R
G
I
G
R
P
S
T
Y
A
S
I
I
S
T
I
Q
D
R
G
Y
V
R
V
E
N
-
R
R
F
Y
A
E
K
M
G
E
I
V
T
D
R
L
E
E
N
F
R
E
L
M
N
Y
D
F
T
A
Q
M
E
N
S
L
D
Q
V
A
N
H
E
A
E
W
K
A
V
L
D
H
F
F
S
D
F
T
-----------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
88.38
41%
-64
- C4 -
1CY1
4
TOP1_ECOLI
A:
[4-586]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
A
L
V
I
V
E
S
P
A
K
A
K
T
I
N
K
Y
L
G
-------------------
S
-------------
D
-------------------
Y
V
V
K
S
S
V
G
H
I
R
D
L
P
--R
G
A
L
V
N
---
R
--
M
-----
G
-----
V
D
-
P
W
H
-
N
W
E
A
-
H
--
Y
-
E
V
L
--
P
G
-
K
E
K
V
V
S
E
L
K
Q
L
A
E
K
A
D
H
I
Y
L
A
T
D
L
D
R
E
G
E
A
I
A
W
H
L
R
---
E
V
I
G
G
D
---
D
A
R
Y
S
R
V
V
F
N
E
I
T
K
N
A
I
R
Q
A
F
N
K
P
G
E
L
N
--
I
D
R
V
N
A
Q
Q
A
R
R
F
M
D
R
V
V
G
Y
M
V
S
P
L
L
W
K
K
I
-
A
-----
R
G
L
S
A
G
R
V
Q
S
V
A
V
R
L
V
V
E
R
E
R
E
I
K
A
F
V
P
E
E
F
W
E
V
D
A
S
T
T
T
P
S
G
E
-
A
-
L
A
L
Q
V
T
H
Q
N
------
D
K
P
F
R
P
V
N
K
E
Q
T
Q
A
A
V
S
----
L
L
E
K
A
R
Y
S
V
L
E
R
E
D
K
P
T
T
S
K
P
G
A
P
F
I
T
S
T
L
Q
Q
A
A
S
T
R
L
G
F
G
V
K
K
T
M
M
M
A
Q
R
L
Y
E
A
---------
G
Y
I
T
Y
M
R
T
D
S
T
N
L
S
Q
D
A
V
N
M
V
R
G
Y
I
S
D
N
F
G
--
K
K
Y
LPE
S
P
-------
N
Q
Y
A
---------
E
A
H
E
A
I
R
P
S
D
---------
V
N
--
V
M
A
E
S
L
-----------
K
D
------
M
E
A
D
A
Q
K
L
Y
Q
L
I
W
R
Q
F
V
A
C
Q
M
T
P
A
K
Y
D
S
T
T
L
T
V
--
G
A
G
D
F
R
L
K
A
R
G
R
I
L
--
R
----
F
D
G
W
T
K
V
M
P
A
L
----------
I
L
P
A
V
N
K
G
D
A
L
T
L
V
E
L
T
P
A
Q
H
F
T
---
K
P
P
A
R
F
S
E
A
S
L
V
K
E
L
E
-----------------
K
R
G
I
G
R
P
S
T
Y
A
S
I
I
S
T
I
Q
D
R
G
Y
V
R
V
E
N
-
R
R
F
Y
A
E
K
M
G
E
I
V
T
D
R
L
E
E
N
F
R
E
L
M
N
Y
D
F
T
A
Q
M
E
N
S
L
D
Q
V
A
N
H
E
A
E
W
K
A
V
L
D
H
F
F
S
D
F
T
Q
Q
L
D
K
A
E
K
D
P
E
E
-----------------------------------------------------------------------------------------------------------------------------
57
Fugue
87.46
42%
-51
- C4 -
2GAI
-
TOP1_THEMA
A:
[7-601]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
I
V
V
E
S
P
A
K
A
K
T
I
K
S
I
L
G
-------------------
N
-------------
E
-------------------
Y
E
V
F
A
S
M
G
H
I
I
D
L
P
K
S
---------
K
--
F
-----
G
-----
V
D
-
L
E
K
-
D
F
E
P
-
E
--
F
-
A
V
I
--
K
G
-
K
E
K
V
V
E
K
L
K
D
L
A
K
K
G
E
-
L
L
I
A
S
D
M
D
R
E
G
E
A
I
A
W
H
I
A
---
R
V
T
N
T
L
---
G
R
K
N
-
R
I
V
F
S
E
I
T
P
R
V
I
R
E
A
V
K
N
P
R
E
I
D
--
M
K
K
V
R
A
Q
L
A
R
R
I
L
D
R
I
V
G
Y
S
L
S
P
V
L
W
R
N
F
-
K
-----
S
N
L
S
A
G
R
V
Q
S
A
T
L
K
L
V
C
D
R
E
R
E
I
L
R
F
V
P
K
K
Y
H
R
I
T
V
N
F
----------
D
G
L
T
A
E
I
D
------
V
K
E
K
K
F
F
D
A
E
T
L
K
E
I
Q
-------
S
I
D
E
L
V
V
E
E
K
K
V
S
V
K
K
F
A
P
P
E
P
F
K
T
S
T
L
Q
Q
E
A
Y
S
K
L
G
F
S
V
S
K
T
M
M
I
A
Q
Q
L
Y
E
G
V
E
T
K
D
-
G
H
I
A
F
I
T
Y
M
R
T
D
S
T
R
V
S
D
Y
A
K
E
E
A
R
N
L
I
T
E
V
F
G
--------------------------
E
E
Y
V
G
A
H
E
A
I
R
P
T
N
---------
V
F
--
M
T
P
E
E
A
-----------
G
K
Y
-----
L
N
S
D
Q
K
K
L
Y
E
L
I
W
K
R
F
L
A
S
Q
M
K
P
S
Q
Y
E
E
T
R
F
V
L
R
T
K
D
G
K
Y
R
F
K
G
T
V
L
K
K
--
I
----
F
D
G
Y
E
K
V
W
K
T
E
R
N
T
G
-------
E
F
P
F
E
E
G
E
S
V
K
P
V
V
V
K
I
E
E
Q
E
T
---
K
P
K
P
R
Y
T
E
G
S
L
V
K
E
M
E
-----------------
R
L
G
I
G
R
P
S
T
Y
A
S
T
I
K
L
L
L
N
R
G
Y
I
K
K
I
R
-
G
Y
L
Y
P
T
I
V
G
S
V
V
M
D
Y
L
E
K
K
Y
S
D
V
V
S
V
S
F
T
A
E
M
E
K
D
L
D
E
V
E
Q
G
K
K
T
D
K
I
V
L
R
E
F
Y
E
S
F
S
S
V
F
D
R
N
D
R
I
V
V
D
F
P
T
N
Q
K
C
S
------
C
G
K
E
M
R
L
S
F
G
K
Y
G
F
Y
L
K
C
----
E
C
G
K
T
R
S
V
K
N
D
---
E
I
A
V
I
D
D
G
K
I
F
L
---------------------------------------------------------------
58
Fugue
82.19
32%
-37
- C4 -
1GKU
-
RGYR_ARCFU
B:
[1-1054]
------------------------------------------------------------------------------------------------------AAAAAAAAAAAAAAAAAAASLCLFPEDFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTAHRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRELDESRDRYRRRQEFDL
I
K
P
A
L
F
I
V
E
S
P
T
K
A
R
Q
I
S
R
F
F
G
KPSVKVLDGAVVYEIPMQK
Y
-------------
V
-------------------
L
M
V
T
A
S
I
G
H
V
V
D
L
I
T
N
---------
R
GF
H
-----
G
-----
V
L
-
V
N
G
-
R
F
V
P
-
V
--
Y
-
A
S
I
--
K
D
N
S
R
S
R
I
E
A
L
R
K
L
A
H
D
A
E
F
V
I
V
G
T
D
P
D
T
E
G
E
K
I
A
W
D
L
K
---
N
L
L
S
-
G
---
C
G
A
V
K
R
A
E
F
H
E
V
T
R
R
A
I
L
E
A
L
E
S
L
R
D
V
D
--
E
N
L
V
K
A
Q
V
V
R
R
I
E
D
R
W
I
G
F
V
L
S
Q
K
L
W
E
R
F
-
N
N----
R
N
L
S
A
G
R
A
Q
T
L
V
L
G
W
I
I
D
R
F
Q
E
S
R
E
R
R
K
I
A
I
V
R
D
F
D
L
V
L
E
-
H
D
E
-
E
----------------------------------------
E
F
D
L
T
I
K
L
V
E
E
R
E
E
L
R
T
P
L
P
P
Y
T
T
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M
L
S
D
A
N
R
I
L
K
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V
K
Q
T
M
Q
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A
Q
E
L
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N
---------
G
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H
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T
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V
S
D
V
G
Q
R
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A
K
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Y
L
G
D
D
F
V
--
G
---------------------
R
E
W
G
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PLTRDDVQR
L
I
--
Q
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L
V
-----------
V
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-----
L
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W
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H
F
A
L
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V
V
V
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--
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A
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E
R
I
V
R
--
A
----
E
G
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A
Y
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L
Y
R
A
V
W
V
K
N
E
L
P
T
G
-------------
T
F
R
V
K
A
E
V
K
S
V
---
P
K
V
L
P
F
T
Q
S
E
I
I
Q
M
M
K
-----------------
E
R
G
I
G
R
P
S
T
Y
A
T
I
V
D
R
L
F
M
R
N
Y
V
V
E
K
Y
-
G
R
M
I
P
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K
L
G
I
D
V
F
R
F
L
V
R
R
Y
A
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D
R
T
R
D
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R
G
E
L
D
Y
L
K
A
L
E
D
M
Y
A
E
I
K
S
I
D
--------------------------------------------------------------------------------------------------------------------------------------
62
Fugue
78.72
30%
-28
- C4 -
4DDU
3
RGYR_THEMA
A:
[2-1103]
AVN
S
K
Y
H
HSCINCGGLNT
D
E
R
N
E
R
GLPCEVCLPEDSPSD
I
Y
R
A
L
L
E
R
KTLKE
Y
R
F
Y
H
E
F
W
N
E
Y
E
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F
R
S
F
F
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K
K
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K
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L
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MVAPTGVG
K
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ADEK
V
K
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R
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L
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E
E
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EAEAN
W
K
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T
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GE
G
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Y
D
L
V
T
K
G
G
I
H
G
V
E
E
E
N
G
-------------------
K
-------------
F
-------------------
V
P
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---------
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-----
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E
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L
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A
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K
I
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W
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---
Q
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---
T
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K
L
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K
R
F
G
R
-----
S
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L
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A
G
R
V
Q
S
T
V
L
G
W
I
V
E
R
E
E
E
----------------
Y
K
-
K
S
E
-
K
-
D
F
T
L
L
V
L
E
N
------
G
V
---------
N
L
E
V
E
G
----
K
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A
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V
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L
Q
E
A
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Q
K
L
R
L
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V
Q
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L
Q
D
L
F
E
K
---------
G
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M
-------
G
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---------
P
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A
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L
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M
-----------
I
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GLIAD
L
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K
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L
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E
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--
D
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D
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---------------------
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P
L
F
T
Q
A
S
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V
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E
M
K
-----------------
K
R
G
I
G
R
P
S
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Y
A
K
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F
R
R
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Y
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K
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Y
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K
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E
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G
E
E
D
Y
Q
A
T
L
R
L
L
Y
E
E
I
K
S
L
-------
M
E
E
-----------------------------------------------------------------------------------------------------------------------------
32
HHSearch
77.89
23%
-35
* C4 *
1I7D
3
TOP3_ECOLI
A:
[1-620]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
L
F
I
A
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K
P
S
L
A
R
A
I
A
D
V
L
P
-------------------
K
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DG
F
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C
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G
-------------------
Q
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L
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Q
A
Q
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---------
D
A-
Y
DSRYA
R
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L
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V
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--------
H
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--
S
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--------------
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A
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N
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V
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F
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A
T
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L
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IARFVQD
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M
A
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L
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R
Q
F
R
G
I
V
A
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----------------------------------------------------------------------------------------------------------------
34
HHSearch
71.93
33%
-40
- C4 -
1GKU
-
RGYR_ARCFU
B:
[505-1053]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
P
A
L
F
I
V
E
S
P
T
K
A
R
Q
I
S
R
F
F
G
-------------------
K
-------------
P
SVKVLDGAVVYEIPMQKYV
L
M
V
T
A
S
I
G
H
V
V
D
L
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---------
R
G-
F
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N
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K
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A
Q
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---------
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S
T
R
V
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D
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E
Y
L
G
D
------
D
F
---
V
----------
G
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---
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---------
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------
L
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Y
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A
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W
V
K
----------
N
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K
A
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V
K
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---
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I
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M
M
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---------------------------------------------------------------------------------------------------------------------------------------