@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu12780: (2016-06-20 )
MVKYQYEFPLDKAGKAGAVKPYRGGKNDFVTPVSNLSGVAEILTNAALKATEAYSQLGQDRLGAVLISKVKGWAYADREGTLFIEESDNNNVWTTTAAVNVAAGVLTATDWVYLSKRYYRFRYVNGNLQQSEFVLYQSVGAGEMDVRVNEKTPLQIDFAENQTHDGRLKVEARKTFDFVFHENAESASEGAALPVDGAAHLLVEVYGTAEMSEVKFWGKSVSGQKLPIRGVKTDDATTASSTLGKAEAWAFDIKGFKEIIMEIISITGGTLSVKGTAVS
Atome Classification :
(20 SA)
---------------------------------.........----10........----20........30--------.....-----...----------.40....----....-----------50......------------------.-.60...------.....70..-...-----.----..----80...---......----------------------90----------------------..--.....-..100---...--------....----.110--..-.....----.---.120...--....130.......140.....-..150.......160..--------.....170.....---..----.----------------------180.......----190.--.......200---------......---.210......-.220.-.--.....230.......240.-----......-------------250.......260.-----......270.......--------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------M
V
K
Y
Q
Y
EFP----LDKAGKAGAV----KPYRGGKN
D
F
V
---------TP
V
S
N
-----
L
S
G
----------
V
A
E
I
L
T
N
----
A
A
L
K
-----------
A
T
E
A
Y
S
Q
L
------------------
G
-
Q
D
R
L
G
A
------
V
L
I
S
KVK
G
W
-
A
Y
A-----D----RE----
G
-
T
L
F
---
I
E
ESDN----------------------N-----------------------
N
V
--
W
T
T
T
A
-
A
V
N
V
----
A
A
G
--------
V
LTA----T
D
----
W
V
-
Y
L
S
K
R
----
Y
---
Y
R
F
R
Y
VN--GNLQQ
S
E
F
V
L
Y
Q
SVGAG
E
M
D
V
R
-VNEKT
P
L
Q
I
DFAENQTH--------D
G
R
L
K
V
E
-
A
R
K
T
F
---
D
F
----
V
----------------------
F
HENAESASE----GA-A--LPVDG
A
A
H
L
L
---------
V
E
V
YGT---AE
M
S
E
V
K
F
WG-KSVSG-Q--KLPIRGVKTDDATTASSTL-----GKA
E
A
W
-------------
A
F
D
I
K
G
F
K
E
I
I
M
E
I
-----
I
S
ITG
G
T
L
S
V
K
G
T
AVS--------------------
29
Fugue
69.79
21%
-69
- C6 -
3DU1
-
?
X:
[0-236]
------------------------------------------------
H
M
N
V
G
E
I
L
----
R
H
Y
A
A
G
K
R
N
F
Q
---------
H
I
--
N
-----
L
Q
E
----------
I
E
--
L
T
N
----
A
S
L
T
G----------
A
D
L
S
Y
A
D
L
------------------
R
-
Q
T
R
L
G
K
------
S
N
F
S
H
T
C
L
R
-
E
A
D
-----
L
----
S
E
----
A
-
I
L
W
GID
L
S
E
A
D
L
----------------------
Y
-----------------------
R
A
--
I
L
R
E
A
-
D
L
T
G
----
A
-------------------------------------------
K
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--
T
R
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E
E
A
N
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-
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P
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N
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--------
R
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L
G
Y
V
-
L
L
T
G
A
---
D
L
----
S
----------------------
Y
A
D
L
R
A
A
S
L
H
----
H
A
-
N
--
L
--
D
G
A
K
---------------
L
C
R
---
A
N
F
G
R
T
I
Q
W
G
-
N
L
A
A
D
L
S
--
G
A
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L
Q
G
A
D
L
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Y
A
N
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E
S
A
I
L
-----
R
K
A
N
L
Q
-------------
G
A
D
L
T
G
---
A
I
L
K
D
-----
A
E
L
K
G
A
I
M
P
D
G
S
I
H
----------------------
26
Fugue
56.81
19%
-95
- C3 -
1TFJ
3
GLTP_BOVIN
A:
[16-219]
---------------------------------------
E
H
L
----
L
R
P
L
P
A
D
K
Q
I
----
E
-----
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---------
E
A
V
S
H
-----
L
P
P
----------
F
F
D
C
L
G
S
----
P
V
F
T
-----------
P
I
K
A
D
I
S
G
------------------
N
-
I
T
K
I
K
A
------
V
Y
D
T
N
P
T
K
F
-
R
T
-----------
L
Q
----
N
-
I
L
E
---
V
E
K
E
M
Y
----------------------
G
-----------------------
A
E
--
W
P
K
V
G
-----------------------
A
----
T
L
----
A
L
-
M
W
L
K
R
----
G
---
L
R
F
I
Q
V
------------
F
L
Q
S
I
C
D
G
E
R
D
-----------------
E
N
H
--------
P
N
L
I
R
V
N
-
A
T
K
A
Y
---
E
M
----
A
----------------------
L
K
K
Y
H
------------------
G
W
I
V
Q
K
I
---------
F
Q
A
A
L
Y
---
A
A
P
Y
K
S
D
F
L
K
-
A
L
S
K
G
-
Q
--
N
-----------
V
T
E
E
E
C
L
-----
E
K
V
R
L
F
-------------
L
V
N
Y
T
A
T
I
D
V
I
Y
E
M
-----
Y
T
R
M
N
A
E
L
N
Y
K
V
------------------------
28
Fugue
56.50
22%
-30
- C4 -
3SPE
2
?
A:
[7-286]
------------------------A
N
P
S
R
L
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A
I
E
I
V
E
D
E
I
P
----
L
T
K
-------------
V
D
G
L
K
A
R
I
I
---------
L
I
E
D
N
-----
T
S
-------------
E
V
G
T
Q
----
R
V
L
P
-----------
G
T
L
V
S
D
K
D
------------------
G
S
Q
S
L
V
Y
P
------
L
F
E
A
P
V
S
F
F
G
K
L
G
-----
D
----
S
N
----
G
M
R
V
W
---
S
T
T
T
A
D
----------------------
I
-----------------------
E
E
--
F
D
E
A
A
M
A
---------
K
--------
F
K
T
R
----
Q
F
----
R
I
-
Q
L
I
E
K
----
P
---
E
S
P
V
I
V
K
--
T
A
D
Q
Q
D
Y
L
N
I
T
F
D
K
G
---
V
Y
S
D
M
Y
N
A
D
L
Y
V
G
D
V
L
V
D
S
Y
S
D
--------
D
G
V
V
S
G
L
-
S
P
L
Y
S
---
P
F
S
Q
F
Y
V
----------------------
Y
H
E
N
I
D
L
V
R
Q
M
I
Y
D
T
E
M
R
--
V
N
P
A
A
A
A
H
----------------
T
---
T
A
P
G
E
I
D
F
L
T
F
L
A
V
D
G
-
D
----
P
Y
Q
G
I
Q
V
L
G
P
L
D
G
G
I
T
L
-----
G
K
D
G
N
---------------------------------
I
Y
A
S
G
G
T
D
G
---------------------------
33
Fugue
53.66
17%
-94
- C6 -
4IND
5
?
A:
[6-383]
------------------------L
G
Q
S
F
P
A
N
A
K
V
K
Y
Y
Y
K
L
S
E
K
Q
D
L
D
A
F
V
N
S
I
F
V
----
G
S
Y
K
L
K
Q
I
S
Y
L
L
YG
N
T
K
I
V
S
A
P
V
V
P
-----
L
G
P
----------
N
A
S
I
I
I
D
----
D
E
L
Q
E
G
L
Y
L
I
R
I
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Y
N
T
N
S
F
S
V
T
V
T
P
FFNNNNT
M
T
Y
S
I
G
A
N
S
-
E
F
E
I
Y
D
------
I
F
T
K
E
Q
G
N
I
-
Y
Y
I
-----
Q
----
L
P
----
P
-
G
L
A
---
I
L
E
F
S
L
----------------------
E
-----------------------
R
V
--
F
E
K
G
N
-
R
I
N
I
----
P
K
I
--------
I
H
T
S
G---
N
G
----
Y
I
-
S
F
R
L
R
K
G
T
Y
A
---
I
K
M
P
Y
S
Y
--
N
N
T
T
S
T
T
F
T
N
F
Q
F
G
T
I
S
T
S
A
T
I
-
P
L
V
I
S
S
I
P
A
N
G
S
G
S
G
T
F
--------
L
V
Y
L
K
I
T
G
D
Y
E
D
V
---
K
F
----
S
VTYGGGLG
V
P
F
T
F
G
L
E
V
E
E
I
N
E
L
V
E
N
T
N
F
V
T
Q
----
S
V
-
T
--
L
S
G
S
Q
V
T
Q
S
I
---------
L
N
V
Q
G
S
G
S
H
L
R
L
K
Y
A
S
V
S
G
-
L
T
T
A
V
-
T
--
Q
C
Q
L
Q
A
T
N
L
N
R
S
T
T
Y
S
T
V
W
DFIAG
G
S
S
T
P
P
-------------
S
W
D
I
R
E
I
N
S
I
Q
L
V
A
N
G
G
S
S
T
S
S
V
T
I
T
L
I
L
V
Y
E
Q
I
A
G
E
L
S
H
H--------------
30
Fugue
52.02
12%
-86
- C1 -
4I6M
6
ARP9_YEAST
B:
[3-439]
PFRQDS
I
L
I
I
Y
P
R
SQ
T
T
L
V
Q
F
G
LNEETFTVPE
L
E
I
P
T
Q
I
Y
R
T
----
T
R
Q
D
G
S
Y
T
Y
H
----
S
T
N
K
D
N
K
A
E
L
I
---------
K
P
I
Q
N
GEIID
I
S
A
----------
F
T
Q
F
L
R
L
----
I
F
V
S
-----------
I
L
S
D
R
A
N
K
------------------
N
-
Q
D
A
F
E
A
ELS
N
I
P
L
L
L
I
T
H
H
S
W
-
S
Q
S
-----
D
----
L
E
I
I
--
T
-
Q
Y
V
---
F
E
S
L
E
I
----------------------
N
-----------------------
N
L
--
I
Q
L
P
A
-
S
L
A
A
----
T
Y
S
M
ISLQ
N
C
C
I
I
D
V
G
TH
H
T
D
----
I
I
-
P
I
V
D
Y
----
A
QLD
H
L
V
S
S
I
P
M-
G
G
Q
S
I
N
D
S
L
K
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L
L
P
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W
D
D
D
Q
I
E
-
S
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L
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D
L
E
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N
T
F
W
D
E
K
G
N
E
I
K
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-
G
K
Q
R
F
QGC
N
N
----
L
----------------------
I
K
N
I
S
N
R
V
G
L
----
T
L
-
D
N
I
D
D
I
N
K
A
K
A
V
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E
N
I
I
I
V
G
GT
T
S
I
S
G
F
---
K
E
A
L
L
G
Q
L
L
K
-
D
H
L
I
I
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E
--
P
E
E
E
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R
E
E
E
A
K
S
F
V
P
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I
-----
E
Y
V
Q
C
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T
V
I
K
L
AKYPDYF
P
E
W
K
K
S
G
Y
S
E
I
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F
L
G
-----
A
Q
I
V
S
K
Q
I
F
T
H
P
K
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F
YIT
R
E
K
Y
N
M
KGPAALWDVQF
31
Fugue
50.79
17%
-47
- C6 -
1KIT
-
?
?:
[1-192]
----------------------------------
A
L
F
D
Y
N
A
T
----
G
D
T
-----------
E
F
D
S
P
A
K
Q
G
W
M
---------
Q
D
N
T
N
-------
N
----------
G
S
G
V
L
T
N
----
A
D
-------------------------------------------
G
M
P
A
------
W
L
V
Q
G
I
G
G
R
-
A
Q
W
-----
T
----
Y
S
----
L
-
S
T
N
---
Q
H
A
Q
A
S
----------------------
S
-----------------------
F
G
--
W
R
M
T
T
-
E
M
K
V
----
L
S
G
--------
G
M
I
T
----
N
Y
----
Y
A
-
N
G
T
Q
R
----
V
---
L
P
I
I
S
L
D
--
S
S
--------------
G
N
L
V
V
E
-
F
E
G
Q
T
------
G
R
T
V
L
A
--------
T
G
-
T
A
A
T
-
E
Y
H
K
F
---
E
L
----
V
----------------------
F
L
P
---
G
S
N
P
----
S
A
-
S
--
F
Y
F
D
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K
L
I
R
---------
D
N
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Q
P
T
---
A
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Q
N
M
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W
G
-
N
G
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N
-
T
D
G
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A
A
Y
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F
E
I
Q
G
D
------------------------------------------------------------------------------------
34
Fugue
40.26
14%
-49
- C5 -
5FIK
-
ATP6_BOVIN
W:
[10-226]
---------------------------------
I
T
P
V
I
L
G
L
P
----
L
V
T
L
I
V
L
F
P
S
----
L
L
F
P
T
S
N
R
--------------------------------------
L
V
S
N
----
R
F
V
T
-----------
L
Q
Q
W
M
L
Q
L
------------------
V
-
S
K
Q
M
M
S
------
I
H
N
S
K
G
Q
T
W
-
T
L
M
-----
L
----
M
S
----
L
-
I
L
F
---
I
G
S
T
N
L
----------------------
L
-----------------------
G
L
--
L
P
-----------------------------------------------------
H
S
F
T
P
T
T
--
Q
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N
L
G
M
A
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P
L
W
A
G
A
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I
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F
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-
N
K
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K
A
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L
A
H
F
L
P
Q
G
T
P
T
--------
P
L
I
P
M
L
V
-
I
I
E
T
I
---
S
L
----
F
----------------------
I
Q
P
M
A
L
A
V
R
L
----
T
A
-
N
--
I
T
---
A
G
H
L
L
---------
I
H
L
I
G
G
---
A
T
L
A
L
------
M
S
I
S
T
-
T
--
T
A
L
I
T
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T
I
L
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T
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L
E
F
A
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-----
A
M
I
Q
A
Y
-------------
V
F
T
L
L
V
S
L
Y
L
H
D
N
T
-----------------------------------------
17
HHSearch
39.90
19%
-28
- C7 -
4A42
-
?
A:
[73-136]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
I
S
A
I
D
I
V
-
S
K
G
-----
N
----
S
P
----
L
-
K
Y
S
---
I
E
I
S
N
D
----------------------
G
-----------------------
T
E
--
W
T
K
I
V
-
D
E
N
------
N
N
--------
E
E
N
K
----
A
V
Y
S
N
I
L
K
S
G
K
I
G
R
----
F
---
V
R
F
N
F
N
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
39.88
17%
-98
- C7 -
4CU9
1
?
A:
[76-168]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
------
R
T
V
A
Q
A
K
L
H
-
F
F
A
-----
D
----
S
G
TDAP
S
-
K
L
V
---
L
E
R
Y
V
G
----------------------
P
GFEVPTYYSNYQAYESGHPFNNP
E
N
--
W
E
A
V
P
-
Y
R
A
D
KDI-
A
A
G
--------
D
E
I
N
----
V
T
----
F
K
-
A
V
K
A
K
----
A
---
M
R
W
R
M
E
R
--
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
38.48
12%
-77
- C7 -
3EYP
1
?
A:
[371-441]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
P
K
T
------
I
E
F
D
C
L
M
I
E
-
E
V
I
-----
E
LGH-
R
T
----
T
-
K
W
S
---
V
E
Y
T
V
D
----------------------
G
-----------------------
K
N
--
W
I
T
I
P
-
E
A
T
D
KQ--
A
I
G
--------
H
K
W
I
----
V
R
----
L
A
-
P
V
K
A
K
----
Q
---
V
R
L
R
I
Q
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
38.03
22%
-88
- C7 -
2J1V
1
?
A:
[66-134]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
K
K
M
------
D
K
V
G
L
V
K
I
Y
-
N
R
T
-----
D
AETQ
R
L
----
S
-
N
F
D
---
V
I
L
Y
D
N
----------------------
N
-----------------------
R
N
--
E
V
A
K
K
-
H
V
N
N
----
L
S
G
--------
E
S
V
S
----
L
D
----
F
K
-
E
K
G
A
R
----
Y
---
I
K
V
K
L
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
37.72
39%
-49
- C8 -
3FMR
3
MAP2_ENCCU
A:
[109-153]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
Y
T
V
N
P
G
E
Q
D
I
V
-
L
K
E
D
D
V
L
K
I
D
F
G
---
T
H
S
-------
D
G
R
I
M
D
S
-
A
---
F
---
T
V
----
A
----------------------
F
K
E
N
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
37.03
39%
-73
- C8 -
3FM3
2
MAP2_ENCCU
A:
[109-153]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
Y
T
V
N
P
G
E
Q
D
I
V
-
L
K
E
D
D
V
L
K
I
D
F
G
---
T
H
S
-------
D
G
R
I
M
D
S
-
A
---
F
---
T
V
----
A
----------------------
F
K
E
N
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
37.02
39%
-70
- C8 -
3FMQ
3
MAP2_ENCCU
A:
[109-153]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
Y
T
V
N
P
G
E
Q
D
I
V
-
L
K
E
D
D
V
L
K
I
D
F
G
---
T
H
S
-------
D
G
R
I
M
D
S
-
A
---
F
---
T
V
----
A
----------------------
F
K
E
N
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
36.45
15%
-107
- C7 -
4CUA
5
?
A:
[74-165]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
V
D
N
L
S
V
G
-
F
H
E
-----
D
----
H
G
VGAP
K
-
S
Y
V
---
I
E
Y
Y
V
G
KTVPTAPKNPSFVGNEDHVFND
S
-----------------------
A
N
--
W
K
P
V
T
-
N
L
K
A
PA
Q
L
K
A
G
--------
E
M
N
H
----
F
S
----
F
D
-
K
V
E
T
Y
----
A
---
I
R
I
R
M
V
K
--
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
35.11
12%
-82
- C7 -
4GWI
4
?
A:
[60-145]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
G
K
T
------
E
N
V
G
K
V
K
L
Y
-
N
R
G
DGNVA
N
----
R
L
----
S
-
N
F
D
---
V
V
L
L
N
E
----------------------
A
-----------------------
K
Q
EV
A
R
Q
H
F
-
D
-
S
L
----
N
G
K
--------
A
E
L
E
----
V
F
----
F
T
-
A
K
D
A
R
----
Y
---
V
K
V
E
L
K
T
KN
T
P
L
S
L
A
E
V
E
V
F
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
33.58
7%
-374
- C7 -
2V72
-
?
A:
[117-130]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
A
E
----
E
---
I
K
I
T
A
I
Q
--
G
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
33.51
25%
-32
- C2 -
4NW4
9
?
A:
[125-211]
-----------------------------------------
G
----
K
D
K
L
G
N
D
V
E
V
Y
V
E
H
I
P
Y
H
G
K
K
L
A
F
T
---------
N
G
R
E
A
-----
L
T
N
QTGKIVTNKS
G
D
K
I
L
G
T
----
T
L
W
N
-----------
G
T
K
V
V
D
K
N
------------------
G
-
N
D
V
T
A
A
------
N
--
Q
N
F
I
S
L
-
A
K
F
-----
D
----
P
N
----
T
-
S
K
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
33.30
42%
-55
* C8 *
1GAV
-
COAT_BPGA
A:
[14-55]
----------------------------------------------------------------
G
T
G
N
V
T
V
---------
V
P
V
S
N
-----
A
N
G
----------
V
A
E
W
L
S
N
NSRS
Q
A
Y
R
-----------
V
T
A
S
Y
R
A
S
------------------
G
-
A
D
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
32.16
42%
-55
- C8 -
1UNA
-
COAT_BPGA
A:
[14-62]
----------------------------------------------------------------
G
T
G
N
V
T
V
---------
V
P
V
S
N
-----
A
N
G
----------
V
A
E
W
L
S
N
NSRS
Q
A
Y
R
-----------
V
T
A
S
Y
R
A
S
------------------
G
-
A
D
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------