@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu19860: (2016-07-02 )
MCNRNVITIPYEEDMSKYSILHQVGGRIEYFQKEYSQYPMFAFDSEEDYNEYKCLIMQLKKNKKVSSFSF
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10-----........20.......--------..30........---40...----.....-50........60........70----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MCNR
N
V
I
T
IP
Y
-----
E
E
D
M
S
K
Y
S
I
-
L
H
Q
VG
G
R
--------
I
E
Y
F
Q
K
E
Y
SQYP---
M
F
A
FD----SEE
D
Y
-
N
E
Y
K
C
L
I
M
Q
L
KKNKKVSSFSF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
74.09
24%
0
- C- -
1C8C
-
A:
[1--24]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
T
V
K
F
K
Y
K
G
E
E
K
Q
V
D
I
S
K
I
K
K
-
V
W
R
V
G
K
M
--------
I
S
F
T
Y
D
E
G
G
G
K
T
---
G
R
G
A
V
----
S
E
K
D
A
P
K
E
L
L
Q
M
L
A
K
Q
---
K
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
68.55
27%
-8
- C3 -
4NUZ
1
?
A:
[1-892]
MKIPEKIPMKPLHGP
L
Y
G
G
Y
F
R
TWHDKTSDPTEKDKVNSMGELPKEVD
L
A
F
I
F
H
D
WTKDY
S
L
F
W
K
E
L
A
T
K
H
V
P
K
L
N
K
Q
G
T
R
V
I
R
T
I
P
W
R
F
L
A
GGDNSGIAEDTSKYPNT
P
E
G
N
K
A
L
A
K
A
I
V
D
E
YVYKYNLD
G
L
D
V
Q
VEHDS
I
P
K
V
DKKED
T
A
G
V
E
R
S
I
Q
V
F
E
E
I
G
K
L
IGPKGVDKS
R
L
F
I
M
D
S
TYMADKNPLIERGAPYIN
L
L
L
V
Q
VYGSQGEKGGWEPVSNRPEKT
M
E
E
R
W
Q
G
Y
SKYIRPEQ
Y
M
I
G
F
S
F
YEENAQEGNLWYDINSRKDEDKANGINTDITGT
R
A
E
R
Y
A
R
WQPKTGGVKG
G
I
F
S
Y
AIDRDGVAHQPKKYAKKDATDNIFHSDY
S
V
S
K
A
L
K
T
V
M
L
K
DKSYDLIDEKDFPD
K
A
L
R
E
A
V
M
A
Q
VGTR
K
G
D
L
E
RFN
G
T
L
R
LDNPAIQSLEGLNKFKKLAQLDLIGLSRITKLDRSVLPANM
K
P
G
K
DTLETVLETYKKDNKEE
P
A
T
I
P
P
V
S
L
K
V
S
GLTGLK
E
L
D
LSGFDRETLAGLDAATLTSLEKVDISGNKLDLAPGT
E
N
R
Q
I
F
D
T
M
L
S
T
I
S
N
H
VGSNEQT
V
K
F
D
KQK
P
T
G
H
Y
P
DTYGKT
S
L
R
L
P
VANEKVDLQSQ
L
L
F
G
T
V
T
N
Q
G
T
-
L
I
N
S
-----
E
A
D
Y
K
A
Y
Q
--
N
H
K
I
A
G
R
SFVDSNYH
Y
N
N
F
K
V
S
Y
E
N
Y
T
---
V
K
V
T
D
----
S
T
L
G
T
-
T
T
D
K
T
L
A
T
D
K
E
E
T
Y
K
V
D
F
F
S
P
ADKTKAV
H
T
A
K
V
I
V
G
DEKTMMVNLAEG
A
T
V
I
G
GSAD
P
V
N
A
R
K
V
F
DGQLGSETDNISLGWDS
K
Q
S
I
I
F
K
L
KEDGLIK
H
W
R
F
F
N
DSARNPETTNKPIQ
E
A
S
L
Q
I
F
NIKDYN
L
D
N
L
L
E
NPNKFDDEKYWITV
D
T
Y
S
A
QGERAT
A
F
S
N
T
L
N
NITSK
Y
W
R
V
V
F
D
TKGDRYSSPVVP
E
L
Q
I
L
G
Y
PLPN
A
D
T
I
M
K
T
V
T
T
A
K
E
L
S
Q
QKDKFS
Q
K
M
L
D
E
L
K
I
K
E
M
A
L
E
T
S
L
N
SKIFD
V
T
A
I
N
A
N
A
G
V
L
K
D
C
I
EK
25
Fugue
56.94
14%
-86
- C3 -
2AN7
-
PARD_ECOLX
A:
[1-83]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
R
L
T
I
D
M
T
D
-----
Q
Q
H
Q
S
L
K
A
L
-
A
A
L
Q
G
K
T
--------
I
K
Q
Y
A
L
E
R
L
F
P
G
-----
D
A
D
----
A
D
Q
A
W
-
Q
E
L
K
T
M
L
G
N
R
I
N
D
G
L
A
G
K
V
S
T
KS
V
G
E
I
L
DEELSGDRA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
54.77
12%
-12
- C3 -
4XMR
2
?
A:
[1-249]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GID
P
F
T
K
T
S
L
Y
E
S
T
L
K
N
Q
T
D
L
L
K
V
T
Q
S
T
V
E
D
F
R
S
T
N
Q
S
F
T
R
A
L
E
K
D
I
A
N
L
P
Y
-----
Q
S
L
I
T
E
E
N
I
-
I
N
N
V
G
P
I
--------
L
K
Y
Y
R
H
S
I
N
A
L
N
---
V
Y
L
G
L
----
N
N
G
K
------
V
L
L
S
Q
K
S
M
P
E
L
R
D
D
L
D
I
KTK
D
W
Y
Q
E
A
L
K
T
N
D
I
F
V
T
P
A
YLDTVLK
Q
Y
V
I
T
Y
S
K
A
I
Y
K
DGKII
G
V
L
G
V
D
I
P
S
E
D
L
Q
N
L
V
A
K
TPGN
T
F
L
F
D
QKNKIFAATNKELLNPSIDH
S
P
V
L
N
A
Y
K
L
N
GDN
N
F
F
S
Y
K
L
NN
E
E
R
L
G
A
C
T
K
V
FA
Y
T
A
C
I
T
E
S
ADIINK----------------------------------------------------------------------------------------------------------
9
HHSearch
53.97
25%
-133
- C4 -
2MXD
-
POLG_PESV
A:
[952-975]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
D
D
E
Y
-
D
E
W
Q
D
I
I
R
D
W
R
K
E
M
T
V
Q
Q
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
51.66
18%
-218
* C3 *
1JUN
1
JUN_HUMAN
A:
[1-43]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
G
R
--------
I
A
R
L
E
E
K
V
K
T
L
K
---
A
Q
N
S
E
----
L
A
S
T
A
-
N
M
L
R
E
Q
V
A
Q
L
K
Q
K
V
M
N
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
51.15
16%
59
- C5 -
1XAU
2
BTLA_MOUSE
A:
[12-115]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
E
V
Q
L
N
IKRN
S
K
H
S
A
W
TGEL
F
K
I
E
C
P
V
K
Y
C
V
H
R
-
P
N
V
T
W
-----
C
K
H
N
G
T
I
W
V
-
P
L
E
V
G
P
Q
--------
L
Y
T
S
W
E
E
N
R
S
V
P
---
V
F
V
L
H
F
KPI
H
L
S
D
N
-
G
S
Y
S
C
S
T
N
F
--
N
S
Q
V
I
N
S
H
S
V
T
I
H
V
R------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
46.59
25%
-96
- C- -
5B08
-
OLIAC_CANSA
A:
[60-75]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
T
F
E
----
S
V
E
T
I
-
Q
D
Y
I
I
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
45.22
31%
-104
- C4 -
1Q4R
-
POP3_ARATH
A:
[67-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
---
E
S
T
F
E
----
S
K
E
A
V
-
A
E
Y
I
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
44.69
13%
-167
- C4 -
3BB5
1
?
A:
[77-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
---
L
C
T
F
T
----
D
K
A
A
L
-
D
A
Y
A
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
43.85
14%
-139
- C2 -
1Y9L
1
MXIM_SHIFL
A:
[25-53]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
W
S
-
F
N
T
T
N
K
S
--------
I
N
V
Y
S
K
C
I
S
G
K
A
---
V
Y
S
F
N
----
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
43.60
13%
-198
- C4 -
1K8V
-
NPF_MONEX
A:
[13-35]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
D
----
N
K
A
A
L
-
R
D
Y
L
R
Q
I
N
E
Y
F
A
I
I
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
43.47
10%
65
* C5 *
4GJT
-
PVRL4_HUMAN
C:
[2-113]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GELETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARV
D
A
G
E
G
A
Q
E
L
A
L
-----
L
H
S
K
Y
G
L
H
V
-
S
P
A
Y
E
G
R
--------
V
E
Q
P
P
P
P
R
N
P
L
D
GSV
L
L
R
N
A
----
V
Q
A
D
E
-
G
E
Y
E
C
R
V
S
T
F
P
A
G
S
F
Q
A
R
L
R
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
39.44
25%
-24
* C4 *
1TR0
1
?
A:
[67-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
---
E
S
T
F
E
----
S
K
S
G
L
-
Q
E
Y
L
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
39.43
38%
79
- C4 -
3MCZ
-
?
A:
[211-236]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
T
-----
T
R
D
A
A
R
K
T
I
H
A
H
D
L
G
G
R
--------
V
E
F
F
E
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
36.95
16%
-81
- C4 -
3HS2
-
PHD_BPP1
A:
[23-54]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
E
--------
V
E
-
I
T
R
R
--
G
R
E
---
P
A
V
I
V
----
S
K
A
T
F
-
E
A
Y
K
K
A
A
L
D
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
36.08
15%
-15
- C4 -
1V61
-
A:
[104-129]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
---
V
V
H
C
N
----
N
N
Q
D
F
-
Q
E
W
M
E
Q
L
N
R
L
T
K
S
G
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
35.79
13%
-139
- C4 -
2FIU
-
?
A:
[54-68]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
---
V
I
E
F
P
----
S
V
Q
H
A
-
I
D
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
35.05
31%
46
- C4 -
3BN7
1
?
A:
[79-94]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---
L
M
V
F
K
----
S
V
E
D
Q
-
K
R
Y
R
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
34.39
17%
-103
- C4 -
2A6Q
-
YEFM_ECOLI
A:
[32-61]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
H
A
P
--------
I
L
-
I
T
R
Q
--
N
G
E
---
A
C
V
L
M
----
S
L
E
E
Y
-
N
S
L
E
E
T
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------