@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu28830: (2016-07-16 )
MFVMVLRIILLALFAYCIYAVVKYVANPKRRLKLAQSKEHFYIIDEQNNTRKNFQLTYKGVLFEGEKHIPSKDHPLFIHTIFVWTESPEKLKHFSAKDFENIEEKVLERYPNCKIDWDQPIKLAKKAEER
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..---.......10--....---...-..20----------.........30....-.------..-.40......-..50..-......60.-----.....-..70...------------.....80-----.......-.------.90....------....100...-------....110--.....--..-..120.......130------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
F
---
V
M
V
L
R
I
I
L
---
L
A
L
F
---
A
Y
C
-
I
Y
A
-----------
V
V
K
Y
VA
N
P
K
R
R
L
K
LA-Q------SK-E
H
F
Y
I
I
DEQ-NNTRK
N
-
F
Q
L
T
Y
K
G
V
L
-----FEGEK-HIPSKDH------------
P
L
F
I
H
T
------
I
F
V
WTES-
P
------
E
K
L
K
HFS------A
K
D
F
E
N
I
E
E
K
-------
V
L
E
RY----PNCKI--DW-DQP
I
K
L
A
K
KAEER--------------------------------------------------
38
Fugue
55.98
12%
24
- C3 -
2NMM
4
PHP14_HUMAN
A:
[12-131]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AV
A
D
---
L
A
L
I
P
D
V
D
---
I
D
S
D
---
G
V
F
-
K
Y
V
-----------
L
I
R
V
H
S
A
P
E
S
K
E
I
V
R
-
G
------
Y
K
-
W
A
E
Y
H
A
D
I
Y
-
D
K
V
S
G
D
M
Q
K
Q
G
C
D
C
E
C
-----
L
G
G
G
R
-
I
S
H
Q
S
Q
D
----------------
K
K
------
I
H
V
Y
G
Y
S
M
A
-----------
Y
G
------
P
A
Q
H
A
I
S
T
E
K
-------
I
K
A
K
Y
----
P
D
Y
E
V
--
T
W
-
A
--------------------------------------------------------------
33
Fugue
51.39
12%
-42
* C5 *
1YD7
6
?
A:
[12-210]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RFPFPVGEP
D
F
---
I
Q
G
D
E
A
I
A
---
R
A
A
I
---
L
A
G
-
C
R
F
-----------
Y
A
G
Y
P
I
T
P
A
S
E
I
F
E
A
M
A
------
L
Y
M
P
L
V
D
G
V
V
I
Q
M
E
D
E
I
A
S
-
I
A
A
A
I
G
A
S
W
-----
A
G
A
K
A
M
T
A
T
S
G
P
G
F
S
L
M
QENIMTE
T
P
V
V
I
V
D
V
QDHS
L
I
V
L
S
P
S
T
-
V
------
Q
E
A
F
D
F
T
------
I
R
A
F
N
L
S
E
K
Y
R
T
P
----
V
I
L
L
T
-----
D
A
E
V
--
G
H
M
R
E
R
V
Y
I
P
N
P
D
E
I
E
I
I
N
R
K---------------------------------------------
19
HHSearch
48.97
21%
-528
- C4 -
3TOV
-
?
A:
[30-43]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
-------
L
R
K
A
A
----
P
H
S
H
I
--
T
Y
----------------------------------------------------------------
32
Fugue
48.76
14%
30
- C3 -
5A9H
4
A:
[1-194]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
ASQ
E
I
F
L
Q
V
L
N
---
L
A
D
G
---
D
-----
V
-----------
K
V
T
V
L
G
S
R
N
N
S
L
L
V
E
-
S
V
S
SFQN
T
T
-
H
Y
S
K
L
H
L
E
A
-
K
S
Q
D
L
H
-
F
H
L
K
Y
N
S
L
S
-----
V
H
N
D
H
-
S
V
E
E
K
N
----------------
C
Y
Q
------
L
L
I
H
Q
D
G
-
E
-------
S
I
S
S
M
L
------
V
K
D
T
G
I
K
P
A
N
G
M
A
A
I
R
F
I
N
T
L
H
----
K
D
L
N
I
SL
D
T
-
D
A
P
L
S
V
G
K
D
Y
G
V
S
A
Y
R
T
V
L
RGKYP
A
V
H
C
E
TED
K
V
F
S
L
D
LGQLDFG
T
T
Y
L
F
V
I
T
NL
Q
A
W
K
A
E
D
I
17
HHSearch
45.89
22%
-129
- C7 -
3KEP
5
NU145_YEAST
A:
[22-66]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
W
C
S
P
-
S
-
P
------
E
Q
L
E
R
L
S
------
L
K
Q
L
A
A
V
S
N
F
-------
V
I
G
R
R
----
G
Y
G
C
I
--
T
F
-
Q
H
D
V
D
----------------------------------------------------------
28
HHSearch
45.21
33%
-285
- C4 -
1PSW
-
RFAF_ECOLI
A:
[22-53]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
T
-------
L
Q
A
R
Y
----
P
Q
A
I
I
--
D
V
-
M
--------------------------------------------------------------
37
Fugue
44.26
22%
81
- C4 -
4N5H
5
?
X:
[1-315]
MADEEAMLAKVQASWAQTAARDKARYADERVPEDVHWETEYRYEQSADPQQTLNLYYPAKRRNATMPTVIDIHGGGWFYGDRNLNRNYCRYLASQGYAVMGMGYRLLPDVDLRGQIQDIFASLRWLSHFGPQRGFDLDHVLLTGDSAGGHLASLVACIQQSAELQELFGVSRVNFNFTLVALVCPVAEPSKLPEAAGDMSD
M
A
---
A
F
Y
L
D
K
L
S
GGD
Q
A
L
V
---
D
H
L
N
F
S
Q
-----------
V
V
K
G
L
D
L
P
P
-------------------
F
M
L
I
G
G
Q
-
N
D
S
----
F
Y
L
Q
S
Q
A
L
L
-----
K
V
F
D
A
-
N
-----
H
------------
V
T
Y
T
T
K
------
L
W
P
A
S
A
G
-
P
------
H
L
K
H
V
F
N
------
V
Q
H
W
E
W
--
P
E
-------
S
I
E
T
N
----
L
E
M
L
R
--
T
F
-
D
A
L
S
K
Q
Q
D
Q
A
E
E
N
E-------------------------------------------------
34
Fugue
43.02
12%
2
- C5 -
1A6S
-
GAG_RSVP
A:
[1-87]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
A
V
I
K
V
I
S
S
-
A
------
C
K
-
T
Y
C
---
G
K
T
-
S
P
S
K
K
E
-
I
G
A
M
L
S
L
L
Q
-----
K
E
G
L
L
------
M
S
------------
P
S
D
L
Y
S
------
P
G
S
W
D
P
I
-
T
------
A
A
L
S
Q
R
A
------
M
I
L
-----------------
G
K
----
S
G
E
L
K
--
T
W
-
G
L
V
L
G
A
L
K
A
A
R
E
E
--------------------------------------------------
41
Fugue
42.08
12%
-12
- C2 -
2KIG
-
I5P2_MOUSE
A:
[1-161]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GP
L
G
---
S
M
D
Q
S
V
A
I
---
Q
E
T
L
VEG
E
Y
C
-
V
I
A
V
Q
G
V
L
C
K
GD
S
R
Q
S
R
L
L
G
L
V
R
Y
R
L
E
N
D
-
A
------
Q
E
-
H
A
L
F
L
Y
T
H
R
-
R
M
A
I
T
G
-
D
D
V
S
L
D
Q
I
V
P
LSKD
F
M
L
E
E
-
V
S
P
D
G
E
L
------------
Y
I
L
G
S
D
------
V
T
V
Q
L
N
T
-
A
------
E
L
K
L
V
F
Q
L
P
FGS
H
T
R
T
F
L
Q
E
V
A
R
-------
A
C
P
G
F
DPE
T
R
D
P
E
F
--
E
W
-
L
S
R
H
T
C
A
E
P
D
A
E
S
--------------------------------------------------
21
HHSearch
40.91
20%
-92
- C7 -
3NF5
1
?
A:
[16-56]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
Y
I
S
P
-
S
-
L
------
D
T
L
A
T
L
S
------
K
Y
E
I
Q
K
V
E
N
L
-------
V
V
G
N
K
----
Q
Y
G
K
I
--
E
F
-
L
D
P
V
D
----------------------------------------------------------
36
Fugue
39.63
14%
77
- C3 -
2BBU
1
SOCS3_MOUSE
A:
[9-164]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E
Y
Q
L
V
---
V
N
A
V
R
K
L
Q
---
E
S
G
F
---
Y
W
------------------
S
A
V
T
G
G
E
A
N
L
L
L
S
-
A
------
E
P
-
A
G
T
F
L
I
R
D
S
-
S
D
Q
R
H
F
-
F
T
L
S
V
K
T
Q
S
-----
G
T
K
N
L
-
R
I
Q
C
E
G
G
------------
S
F
S
L
Q
S
------
D
P
R
S
T
Q
P
-
V
PRFDCV
L
K
L
V
H
H
Y
------
M
P
P
P
G
T
P
S
F
S
-------
L
P
P
T
E
----
P
S
S
E
V
--
P
E
-
Q
P
P
A
Q
A
L
P
G
S
T
P
K
R
A
Y
Y
I
Y
SGG
E
K
I
P
L
V
L
S
R
P
L
S
S
N---------------------------
2
PsiBlast_PDB
39.21
57%
-4
- C6 -
3BQR
-
DAPK3_HUMAN
A:
[251-269]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
D
P
K
R
R
M
T
I
A
-
Q
------
S
L
-
E
H
S
W
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
38.99
57%
-21
- C6 -
5A6O
-
DAPK3_HUMAN
A:
[251-269]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
D
P
K
R
R
M
T
I
A
-
Q
------
S
L
-
E
H
S
W
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
38.73
57%
3
- C6 -
3BHY
-
DAPK3_HUMAN
A:
[251-269]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
D
P
K
R
R
M
T
I
A
-
Q
------
S
L
-
E
H
S
W
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
38.62
29%
-186
- C4 -
4L8J
-
?
A:
[155-198]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-----------
I
V
R
L
V
N
T
R
K
L
R
I
K
F
T
-
V
------
P
D
-
D
Y
L
Y
L
L
R
A
K
-
D
A
T
F
K
V
-
E
F
D
T
Y
K
G
T
V
-----
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
38.36
57%
1
- C6 -
5A6N
-
DAPK3_HUMAN
A:
[251-269]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
D
P
K
R
R
M
T
I
A
-
Q
------
S
L
-
E
H
S
W
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
37.52
57%
-20
- C6 -
2J90
-
DAPK3_HUMAN
A:
[272-290]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
D
P
K
R
R
M
T
I
A
-
Q
------
S
L
-
E
H
S
W
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
37.48
19%
-160
- C4 -
2MQ8
-
?
A:
[8-43]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
I
T
A
D
D
-
E
------
N
K
A
E
E
I
V
------
K
R
V
I
D
E
V
E
R
E
-------
V
Q
K
Q
Y
----
P
N
A
T
I
--
T
-----------------------------------------------------------------
16
HHSearch
37.44
27%
-219
- C4 -
2GT1
-
?
A:
[22-36]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
-------
A
Q
Q
A
I
----
P
G
I
K
F
--
D
W
-
V
--------------------------------------------------------------
11
HHSearch
35.85
18%
-30
- C4 -
2HW4
4
PHP14_HUMAN
A:
[114-141]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
Y
G
------
P
A
Q
H
A
I
S
T
E
K
-------
I
K
A
K
Y
----
P
D
Y
E
V
--
T
W
-
A
N
-------------------------------------------------------------