@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu39139: (2016-08-05 )
MNITQYEKLKQHLSDEDTGPFTLNEFSFYMKEDDRYIHIPVFE
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...--------......10....--....20.....-.---..30.-........40..------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MN
I
--------
T
Q
Y
E
K
L
K
Q
H
LSD--EDTG
P
F
T
L
N
E
F
-
S
---
F
Y
M-K-EDD
R
Y
I
HIPVFE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
73.14
23%
-227
- C6 -
5AGQ
-
BAZ2A_HUMAN
A:
[562-587]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
P
E
V
I
K
Y
L
S
R
--
N
V
V
H
S
V
R
R
E
H
F
-
S
---
F
S
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
61.58
30%
79
- C6 -
4NFU
3
EDS1L_ARATH
A:
[15-633]
AFEALTGIN
G
D
L
I
T
R
S
W
S
A
S
K
Q
A
Y
L
T
ER
Y
H
K
E
E
A
GA
V
V
I
F
A
F
Q
P
S
FSEKDFFDPDNKSSFG
E
I
K
L
NRVQFPCMRKIGKG
D
V
A
T
V
N
E
A
F
L
K
N
L
E
A
V
I
DPRTS
F
Q
A
S
V
E
M
A
V
R
S
RKQ
I
V
F
T
GH
S
S
G
G
A
T
A
I
L
A
T
V
W
Y
L
E
K
YFIRNPNVYL
E
P
R
C
V
T
F
GAPLVGD
S
I
F
S
H
A
L
G
R
E
KWSRF
F
V
N
F
V
T
RFDIVPRITLARKASVEET
L
P
H
V
L
A
Q
L
DPRNSSVQES
E
Q
R
I
T
E
F
Y
T
S
V
M
R
D
T
S
T
V
A
N
Q
A
V
C
E
L
T
GSA
E
A
I
L
E
T
L
S
SF
L
E
L
S
P
Y
R
P
A
G
T
F
V
F
S
T
EK
R
L
V
A
V
NN
S
D
A
I
L
Q
M
L
F
Y
T
C
QASDEQEWSL
I
P
F
R
S
I
R
D
H
H
S
Y
E
E
L
V
Q
S
M
GM
K
L
F
N
H
LDGENSI
E
S
S
L
N
D
L
GVS
T
R
G
R
Q
Y
V
Q
A
A
L
E
E
E
K
K
R
V
E
N
Q
K
K
I
I
Q
V
I
Q
Q
E
R
F
L
K
K
L
A
W
I
E
DE
Y
K
P
K
C
Q
A
H
KNG
Y
Y
D
S
F
K
V
SNE
E
N
D
F
K
A
N
V
K
R
A
E
L
A
G
V
F
D
E
V
L
G
L
L
K
K
CQLPDEFEGD
I
D
W
I
K
L
A
T
R
Y
R
R
L
V
E
P
L
D
I
--------
A
N
Y
H
R
---
H
L
K
N
--
E
D
T
G
P
Y
M
K
R
G
R
P
T
---
R
Y
I
-
Y
-
A
Q
R
G
Y
E
H
H
I
L
K
P
NGMI
A
E
D
V
F
W
N
K
V
N
G
L
NLGLQ
L
E
E
I
Q
E
T
L
KNSGSECGSC
F
W
A
E
V
E
E
L
KGKPYEEV
E
V
R
V
K
T
L
E
G
M
L
R
E
W
I
T
A
GEVDEKEIFLEGS
T
F
R
K
W
W
I
T
LP
K
N
H
K
S
H
SPLRDY
M
M
D
E
I--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
60.68
25%
-49
* C8 *
1IMT
-
?
?:
[1-36]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
I
--------
T
G
A
C
E
-----
R
D
--
L
Q
C
G
K
G
T
C
C
A
V
-
S
---
L
W
I
-
K
---
S
V
R
V
C
T
P
V
G
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
54.57
18%
73
- C6 -
4R4X
2
?
A:
[1-546]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
Q
T
Y
E
I
T
Y
Q
N
S
F
EGKINQN
H
I
I
S
I
T
N
SD
K
T
L
L
F
N
E
K
I
K
N
KKADFP
F
E
V
N
E
I
NRKNN
E
V
S
Q
F
A
FLNNN
E
I
V
K
T
S
D
NTILAK
Q
E
F
K
P
T
S
E
T
G
K
I
LG
Y
N
V
K
K
A
V
T
S
V
NS
N
T
I
E
V
W
Y
T
NDLKVKGGPSILGQDLGLVL
K
T
V
R
NG
S
S
V
V
E
A
T
S
V
--------
K
K
I
K
A
L
D
D
Q
S
L
F
--
N
G
K
N
I
T
E
K
D
A
L
-
T
---
Y
K
D
M
I
-
W
K
S
R
F
I
T
I
P
V
F
E
N
E
T
I
N
F
S
DA
S
K
S
D
QV
I
Q
R
F
GNGT
I
I
L
K
K
V
K
I
P
EIKQG
N
T
I
F
V
E
L
K
Q
K
S
NGDAYD
R
T
G
D
V
F
I
I
P
QERAIS
Y
Y
T
G
L
T
QGVKS
L
P
V
Y
Q
N
GNG
K
S
Y
Q
GVALTPDYLPFIEL
M
R
F
F
T
P
FGIGHFNEKIQLKG
K
N
W
H
N
N
T
P
Y
R
Q
D
ITELRPQLSGKEIL
I
G
A
F
I
G
N
YDKG
G
H
Q
I
S
L
E
L
S
I
H
PDQQKIVNNN
F
V
L
P
VFNTTNVMEMA
G
Q
D
Y
PTMFNSDKG
V
E
V
D
F
I
L
T
K
D
L
K
NAQLR
Y
I
T
T
G
H
G
GWGAGDEF
V
P
K
E
N
S
I
Y
L
DGKLA
H
A
F
T
P
W
R
TDCGSYRLFNPASGNFEDGLSSSDLSRSNWCPG
T
I
T
N
P
V
Y
I
N
LGNLNA
G
K
H
T
I
Q
V
K
I
P
Q
G
A
P
E
GS
S
Q
S
F
W
N
V
S
G
V
L
L
G
Q
E
H
H
H
H
H
H
HH
2
HHSearch
54.02
44%
-201
- C4 -
3ZNV
-
OTUL_HUMAN
A:
[254-269]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
I
-
A
-
E
D
D
R
H
Y
N
I
P
V
R
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
51.05
7%
-58
- C6 -
4ZDT
3
SLX4_SCHPO
B:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GS
M
I
V
T
Q
T
H
R
A
I
S
Q
V
V
K
Q
--------
A
K
D
N
S
V
W
I
K
I
L
T
--
Y
S
--
A
I
D
V
E
E
F
-
Q
---
L
W
L
-
K
-
R
K
N
L
N
V
S
L
D
L
I
K
S
W
C
D
K
Y
G
V
L
M
K
GS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
50.14
35%
-49
- C9 -
1B9B
-
PGKT_THEMA
A:
[60-76]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
L
G
A
Q
N
V
F
Y
--
E
D
Q
G
A
F
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
50.05
18%
-181
- C6 -
1K9U
1
POLC7_PHLPR
A:
[50-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
D
G
F
I
D
F
N
E
F
-
I
---
S
F
C
-
N
-
A
N
P
G
L
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
48.73
22%
118
- C5 -
2JXC
-
B:
[6-45]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PSV
T
E
A
--------
S
P
W
R
A
T
N
P
F
L
N
E
TL
Q
D
V
Q
P
S
P
I
N
P
F
-
S
---
A
F
F
-
E
-
E
Q
E
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
47.42
26%
-199
- C7 -
4O7J
-
?
B:
[38-57]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
L
-
T
---
F
F
I
-
H
R
P
D
G
G
Y
S
I
M
P
V
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
46.44
16%
60
- C3 -
2LU7
-
A:
[1-82]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MT
R
V
R
S
T
PG
G
D
L
E
L
V
V
HLSGPGGP
V
R
W
Y
K
DG
E
R
L
A
SQG
R
V
Q
--------
L
E
Q
A
G
A
R
Q
V
L
R
V
--
Q
G
A
R
S
G
D
A
G
E
Y
-
L
---
C
D
A
-
P
-
Q
D
S
R
I
F
L
V
S
V
E
E
P-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
45.87
31%
24
- C9 -
5IBX
-
?
A:
[64-79]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
A
A
Q
N
C
Y
F
--
E
N
A
G
A
F
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
37.53
13%
-24
- C6 -
2CKZ
-
RPC9_YEAST
A:
[1-68]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
V
LEERN
A
F
L
S
D
Y
E
V
L
K
F
L
T
D
L
--
E
K
K
H
L
W
D
Q
K
S
L
-
A
---
A
L
R
-
P
-
Y
N
H
P
E
L
Q
G
I
T
R
N
V
V
N
Y
L
S
I-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
37.44
17%
-8
- C6 -
5B8I
1
?
B:
[143-166]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
D
G
R
I
S
F
E
E
F
-
T
---
R
M
V
-
E
-
N
T
D
V
S
M
S
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
36.81
43%
-65
- C6 -
1GEA
-
A:
[3-16]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
I
F
T
-
D
S
Y
-
S
---
R
Y
R
-
K
-
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
36.50
27%
213
* C9 *
1O5X
-
TPIS_PLAFA
A:
[61-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
I
Q
N
V
S
K
--
F
G
N
G
S
Y
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
34.84
20%
116
* C6 *
3UC7
5
?
A:
[1-22]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
A
Y
A
Q
W
L
A
D
GG
P
S
S
G
R
P
P
P
S
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
34.33
43%
58
- C6 -
4YIZ
-
?
B:
[5-18]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
T
Q
H
L
N
D
--
S
G
L
G
P
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
33.50
18%
115
- C8 -
2O7I
-
?
A:
[172-196]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
V
V
S
G
P
Y
K
L
Y
Y
Y
-
D
PN
I
V
V
Y
-
Q
-
R
V
D
D
W
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
33.40
31%
22
- C6 -
2Y8T
-
RON2_TOXGO
B:
[2-13]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
Q
H
M
E
D
--
I
G
G
A
P
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------