@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 110_tII_WHEAT: (2014-05-01 )
QDCDAGKLIVCAAAIIGGAEPSASCCSNLKAQQGCLCKYASNPAYSGYINSPTARKTLTSCGIPIPTCPQ
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------...-----.--....---.-10....--.-------------..---------.--20.-----.-----------......-----.30--.-----------..-----......40----.-..------------..-----..--.50------...-.....60.....----------...70------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------QDC-----D--AG
K
L
---
I
-
V
C
A
A
A
I
--I-------------GG---------A--E-P-----
S
-----------
A
S
C
C
S
N-----LK---A-----------QQ-----
G
C
L
C
KYAS----N-PA------------YS-----GY--INS------PT
A
-
R
K
T
L
T
SCGIPIP----------TCPQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
92.01
58%
-122
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
Q
L
---
T
-
V
C
T
G
A
I
--
A
-------------
G
G
---------
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
-----
L
R
---
A
-----------
Q
Q
-----
G
C
F
C
Q
F
A
K
----
D
-
P
R
------------
Y
G
-----
R
Y
--
V
N
S
------
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
----------
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
91.65
57%
-122
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
Q
L
---
T
-
V
C
T
G
A
I
--
A
-------------
G
G
---------
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
-----
L
R
---
A
-----------
Q
Q
-----
G
C
F
C
Q
F
A
K
----
D
-
P
R
------------
Y
G
-----
R
Y
--
V
N
S
------
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
----------
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
91.65
57%
-122
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
Q
L
---
T
-
V
C
T
G
A
I
--
A
-------------
G
G
---------
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
-----
L
R
---
A
-----------
Q
Q
-----
G
C
F
C
Q
F
A
K
----
D
-
P
R
------------
Y
G
-----
R
Y
--
V
N
S
------
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
----------
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
91.29
60%
-120
- C2 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
----------------------------------------------------------------------------------------
A
C
-----
Q
--
A
S
Q
L
---
A
-
V
C
A
S
A
I
--
L
-------------
S
G
---------
A
--
K
-
P
-----
S
-----------
G
E
C
C
G
N
-----
L
R
---
A
-----------
Q
Q
-----
G
C
F
C
Q
Y
A
K
----
D
-
P
T
------------
Y
G
-----
Q
Y
--
I
R
S
------
P
H
A
-
R
D
T
L
T
S
C
G
L
A
V
P
----------
H
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
SP3
73.24
21%
-149
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
--
A
E
M
L
---
N
-
H
C
G
M
Y
L
--
M
KN-----------
L
G
---------
E
--
R
-
S
-----
Q
VSPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
-----
L
K
---
N
L----------
D
E
-----
K
C
M
C
P
A
I
M
M
M
L
N
E
-
P
M
------------
W
I
-----
R
M
--
R
D
Q
V
M
----
S
M
A
-
H
N
L
P
I
E
C
N
L
M
S
Q
----------
P
C
Q
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
70.09
31%
-97
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
--------------------------------------------------------------------------------------------------
Q
G
N
L
---
A
-
Q
C
I
G
F
L
--
Q
-------------
K
G
---------
G
--
V
-
V
-----
P
-----------
P
S
C
C
T
G
-----
V
K
---
N
I
L
NSSRTTADR
R
A
-----
V
C
S
C
L
K
A
A
----
A
-
G
A
------------
V
R
------
G
--
I
N
P
------
N
N
A
-
E
A
L
P
G
K
C
G
V
N
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
69.47
29%
-103
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-------------------------------------------------------------------------------------AI
D
L
C
GM---
S
--
Q
D
E
L
---
N
-
E
C
K
P
A
V
--
S
-------------
K
E
NP-------
T
--
S
-
P
-----
S
-----------
Q
P
C
C
T
A
-----
L
Q
H
--
A
-----------
D
F
-----
A
C
L
C
G
Y
K
N
----
S
-
P
W
------------
L
G
-----
S
F
G-
V
D
P
------
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
N
A
P---------
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
69.27
28%
-109
- C2 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
--------------------------------------------------------------------------------------------------
Q
D
E
L
---
N
-
E
C
K
P
A
V
--
S
-------------
K
E
---------
N
PT
S
-
P
-----
S
-----------
Q
P
C
C
T
A
-----
L
Q
---
H
-----------
A
D
F
----
A
C
L
C
G
Y
K
N
----
S
-
P
W
------------
L
G
-----
S
F
G-
V
D
P
------
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
N
A
P---------
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
67.35
33%
-119
- C2 -
1T12
-
NLTP1_TOBAC
A:
[9-78]
---------------------------------------------------------------------------------------------------
S
N
L
---
A
-
P
C
L
A
Y
L
--
R
-------------
N
T
---------
G
----
P
-----
L
-----------
G
R
C
C
G
G
-----
V
K
---
A
L
V
N
S
A
RT
T
E
D
R
Q
I
-----
A
C
T
C
--
L
K
----
S
-
A
A
-------------
G
-----
A
I
SG
I
N
L
------
G
K
A
-
A
G
L
P
S
T
C
G
V
N
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
63.64
33%
-99
- C2 -
1AFH
-
NLTP_MAIZE
A:
[9-80]
---------------------------------------------------------------------------------------------------
S
A
I
---
A
-
P
C
I
S
Y
A
--
R
-------------
G
Q
---------
G
--
S
G
P
-----
S
-----------
A
G
C
C
S
G
-----
V
R
---
S
L
N
N
A
A
RT
T
A
D
R
R
A
-----
A
C
N
C
--
L
K
----
N
-
A
A
-------------
A
-----
G
V
SG
L
N
A
------
G
N
A
-
A
S
I
P
S
K
C
G
V
S
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
63.18
18%
-113
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
-----
E
--
A
E
M
L
---
N
-
H
C
G
M
Y
L
--
M
KNLGERSQVSPR
M
R
E
---------
E
--
D
-
H
-----
K
-----------
Q
L
C
C
M
Q
-----
L
K
---
N
L----------
D
E
-----
K
C
M
C
P
A
I
M
----
M
-
M
L
------------
N
E
-----
P
M
--
W
I
R
MR
D
Q
V
M
S
M
A
-
H
N
L
P
I
E
C
N
L
M
S
Q
----------
P
C
Q
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
62.31
28%
-83
* C2 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
--------------------------------------------------------------------------------------A
I
S
C
-----
G
Q
V
A
S
A
I
---
A
-
P
C
I
S
Y
A
--
R
-------------
G
Q
---------
G
--
S
G
P
-----
S
-----------
A
G
C
C
S
G
-----
V
R
---
S
-----------
L
N
-----
N
A
----
A
R
----
T
-
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
V
SG
L
N
A
------
G
N
A
-
A
S
I
P
S
K
C
G
V
S
I
P
YTISTST---
D
C
S
R
VN-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
61.31
25%
-131
- C2 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
----------------------------------------------------------------------------------------------------
D
L
---
S
-
I
C
L
N
I
L
GG
S
-------------
L
G
---------
T
----------
V
-----------
D
D
C
C
A
L
-----
I
G
---
G
-----------
L
G
D
I
E
A
I
V
C
L
C
I
Q
L
R
----
A
---------------
L
G
-----
I
---
L
N
L
------
N
R
N
L
Q
L
I
L
N
S
C
G
R
S
Y
P
----------
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
60.59
26%
-97
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[9-79]
---------------------------------------------------------------------------------------------------
S
S
L
---
A
-
P
C
I
P
Y
V
--
R
-------------
G
G
---------
G
--
A
-
V
-----
P
-----------
P
A
C
C
N
G
-----
I
R
---
N
V
N
N
L
A
RT
T
P
D
R
Q
A
-----
A
C
N
C
--
L
K
----
Q
-
L
S
-------------
A
-----
S
V
PG
V
N
P
------
N
N
A
-
A
A
L
P
G
K
C
G
V
S
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
57.97
28%
-65
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
--------------------------------------------------------------------------------------------------
D
S
L
V
---
R
-
P
C
L
S
Y
V
--
Q
-------------
G
G
---------
P
--
G
-
P
-----
S
-----------
G
Q
C
C
D
G
-----
V
K
---
N
L
H
N
Q
ARS
Q
S
D
R
Q
S
-----
A
C
N
C
L
K
G
I
----
A
-
R
G
------------
I
H
------
N
--
L
N
E
------
D
N
A
-
R
S
I
P
P
K
C
G
V
N
L
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
SP3
51.55
18%
-104
- C2 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
-----------------------V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YSPN
S
P
A
Q
P
Q
-----
T
--
A
G
T
L
T
L
L
P
-
V
A
L
R
A
P
--
V
-------------
T
A
---------
G
--
Q
-
L
-----
A
-----------
V
E
N
G
H
Y
-----
V
V
---
E
-----------
T
L
-----
A
R
A
C
D
G
C
L
----
N
-
G
E
------------
F
A
-----
A
L
--
I
T
G
------
P
V
H
-
K
G
V
I
N
D
A
G
I
P
F
T
G
H
T
E
F
F
E
E
R
S
Q
A
K
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
30
SP3
50.25
22%
-67
- C2 -
1HYP
-
?
?:
[6-80]
---------------------------------------------------------------------------------------
P
S
C
-----
P
----
D
L
---
S
-
I
C
L
N
I
L
--
G
-------------
G
S
---------
L
--
G
-
T
-----
V
-----------
D
D
C
C
A
L
-----
I
G
G
LG
D
-----------
I
E
-----
A
I
V
C
L
C
I
Q
----
L
-
R
A
------------
L
G
-----
I
L
--
N
L
N
------
R
N
L
-
Q
L
I
L
N
S
C
G
R
S
Y
P
SNA-------
T
C
P
R
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
46.53
25%
-89
- C2 -
1MOL
-
MONB_DIOCU
A:
[1-94]
-----------------------------------------------------------------------------G
E
W
E
I
I
D
IG
P
F
T
Q
-----
N
--
L
G
K
F
---
A
-
V
D
E
E
N
K
--
I
-------------
G
Q
Y
G
R
L
T
F
N
KV
I
--
R
-
P
-----
C
-----------
M
K
K
T
I
Y
E
N
ERE
I
K
---
G
-----------
Y
E
-----
Y
Q
L
Y
V
Y
A
S
----
D
-
K
L
------------
F
R
-----
A
D
--
I
S
E
D
Y----
K
T
R
-
G
R
K
L
L
R
F
N
G
P
V
P
------------
P
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
41.87
12%
-85
- C2 -
1ELK
-
TOM1_HUMAN
A:
[1-153]
SDFLLGNPFSS
P
V
G
Q
R
I
E
K
A
T
DGSLQSED
W
A
L
N
M
E
I
C
D
I
I
N
E
TEE
G
P
K
D
A
L
R
A
V
K
K
R
I
VGNKN
F
H
E
V
M
L
A
L
T
V
L
E
T
C
V
K
N
CG
H
R
F
H
V
L
V
A
-----
S
--
Q
D
F
V
---
E
S
V
L
V
R
T
I
--
L
-------------
P
K
---------
N
--
N
-
P
-----
P
-----------
T
I
V
H
D
K
-----
V
L
---
N
-----------
L
I
-----
Q
S
W
A
D
A
F
R
----
S
S
P
D
------------
L
T
-----
G
V
-----------
V
T
I
-
Y
E
D
L
R
R
K
G
L
E
F
P
----------
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
41.20
17%
-76
- C2 -
1KNG
-
CYCY_BRADU
A:
[50-193]
--------------------------------------------------------------------------RPAPQ
T
A
L
P
P
LEG
L
Q
A
-----
D
--
N
V
Q
V
---
P
-
G
L
D
P
A
A
--
F
-------------
K
G
------------
K
-
V
S
L
V
N
V
W
-----------
A
S
W
C
V
P
-----
C
H
---
D
-----------
E
A
-----
P
L
L
T
E
L
G
K
----
D
-
K
R
------------
F
Q
L
V
G
I
N
Y
K
--
D
A
A
------
D
N
A
-
R
R
F
L
G
R
Y
G
N
P
F
G
----------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L---------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
QDCDAG
K
L
I
V
C
A
A
A
I
IGGAEP
S
A
S
C
C
S
NLKAQQ
G
C
L
C
KYASNPAYSGYINSPT
A
R
K
T
L
T
SCGIPIPTCPQ
40
93.55
100%
-128
- C- -
M040
-
A:
[1-104]
Q
D
C
D
A
G
K
L
I
V
C
A
A
A
I
I
G
G
A
E
P
S
A
S
C
C
S
N
L
K
A
Q
Q
G
C
L
C
K
Y
A
S
N
P
A
Y
S
G
Y
I
N
S
P
T
A
R
K
T
L
T
S
C
G
I
P
I
P
T
C
P
Q
41
91.33
100%
-130
- C- -
M041
-
A:
[1-104]
Q
D
C
D
A
G
K
L
I
V
C
A
A
A
I
I
G
G
A
E
P
S
A
S
C
C
S
N
L
K
A
Q
Q
G
C
L
C
K
Y
A
S
N
P
A
Y
S
G
Y
I
N
S
P
T
A
R
K
T
L
T
S
C
G
I
P
I
P
T
C
P
Q