@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-04 )
AITCGTVTVSLAPCLNYLKKGGPVPPACCNGIKSLNAAAKTTADRQAACNCLKTASTSIAGINLSYASSLPGKCGVNVPYKISPSTDCSKVQ
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......--..10........----20---.----.----------------------.---------------.------.----.---...30........40----------.---.....-...50....--....-------60------.---------.-----------------.----------......70-....---.....80.....---...90.-----------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AITCGTV--TVSLAPCLNYLK----K----G----G----------------------P---------------V------P----P---ACCNGIKSLNAAAK-----------T---TADRQ-AACNCLKTA--STSI-------A-------G---------I-----------------N----------LSYASSL--PGKC---GVNVPYKISPST---DCSKVQ-----------------------
11
HHSearch
96.92
62%
-121
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
--
S
S
S
L
A
P
C
I
P
Y
V
R
----
G
----
G
----
G
----------------------
A
---------------
V
------
P
----
P
---
A
C
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
---
T
P
D
R
Q
-
A
A
C
N
C
L
K
Q
L
--
S
A
S
V
-------
P
-------
G
---------
V
-----------------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
---
G
V
S
I
P
Y
K
I
S
A
S
T
---
N
C
A
T
V
K
-----------------------
13
HHSearch
93.90
64%
-115
- C4 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
--
T
S
N
L
A
P
C
L
A
Y
L
R
----
N
----
T
----
G
--------------------------------------
P
------
L
----
G
---
R
C
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
---
T
E
D
R
Q
-
I
A
C
T
C
L
K
S
A
--
A
G
A
I
-------
S
-------
G
---------
I
-----------------
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
---
G
V
N
I
P
Y
K
I
S
P
S
T
---
D
C
S
K
V
Q
-----------------------
15
HHSearch
93.44
54%
-123
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
--
Q
G
N
L
A
Q
C
I
G
F
L
Q
----
K
----
G
----
G
----------------------
V
---------------
V
------
P
----
P
---
S
C
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
---
T
A
D
R
R
-
A
V
C
S
C
L
K
A
A
--
A
G
A
V
-------
R
-------
G
---------
I
-----------------
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
---
G
V
N
I
P
Y
K
I
S
T
S
T
---
N
C
N
S
I
N
-----------------------
30
SP3
91.36
54%
-117
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
A
I
A
P
C
I
S
Y
A
R
----
G
----
Q
----
G
----------------------
S
G--------------
P
------
S
----
A
---
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
---
T
A
D
R
R
-
A
A
C
N
C
L
K
N
A
--
A
A
G
V
-------
S
-------
G
---------
L
-----------------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
---
G
V
S
I
P
Y
T
I
S
T
S
T
---
D
C
S
R
V
N
-----------------------
16
HHSearch
90.31
47%
-123
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
--
D
S
L
V
R
P
C
L
S
Y
V
Q
----
G
----
G
----
P
----------------------
G
---------------
P
------
S
----
G
---
Q
C
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
---
Q
S
D
R
Q
-
S
A
C
N
C
L
K
G
I
--
A
R
G
I
-------
H
-------
N
---------
L
-----------------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
---
G
V
N
L
P
Y
T
I
S
L
N
I
---
D
C
S
R
V
------------------------
12
HHSearch
86.89
54%
-109
- C4 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
A
I
A
P
C
I
S
Y
A
R
----
G
----
Q
----
G
----------------------
S
G--------------
P
------
S
----
A
---
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
---
T
A
D
R
R
-
A
A
C
N
C
L
K
N
A
--
A
A
G
V
-------
S
-------
G
---------
L
-----------------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
---
G
V
S
I
P
Y
T
I
S
T
S
T
---
D
C
S
R
V
N
-----------------------
29
HHSearch
64.12
20%
-141
- C4 -
1HSS
-
IAA1_WHEAT
A:
[15-105]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
-
G
----
S
----------------------
Q
VP
E
A
-----------
V
------
L
----
R
---
D
C
C
Q
Q
L
A
H
I
----------------------
S
E
W
-
C
R
C
G
A
L
Y
S
M
--
L
D
S
M
-------
Y
K
E
HGAFP
R
CR
R
E
-----
V
-----------------
V
----------
K
L
T
A
A
S
I
--
T
A
V
C
---
R
L
P
I
V
V
--------------------------------------
25
HHSearch
60.56
29%
-121
- C4 -
1SM7
-
?
A:
[13-101]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
H
L
R
A
C
Q
Q
W
I
R
----
Q
QLA-
G
----
S
----------------------
P
F
S
E
NQWGPQQGPS--
L
------
R
----
E
---
Q
C
C
N
E
L
Y
Q
E
----------------------
D
Q
V
-
C
V
C
P
T
L
K
Q
A
--
A
K
S
V
-------
R
VQ-----
G
Q--------
H
GPFQST
R
----------
I
----------
Y
Q
I
A
K
N
L
--
P
N
V
C
---
N
M
K
Q
I
---------------------------------------
35
SP3
59.27
19%
-130
* C4 *
1HSS
-
IAA1_WHEAT
A:
[5-124]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MCYPGQ
A
F
Q
------
V
P
A
L
P
A
C
R
P
L
L
R
L
Q
C
-
N
----
G
----
S
----------------------
Q
---------------
V
------
P
E
A
V
L
R
---
D
C
C
Q
Q
L
A
H
I
----------------------
S
E
W
-
C
R
C
G
A
L
Y
S
M
--
L
D
S
M
Y
K
E
HGAF
P
-------
R
---------
C
-----------------
R
R
E
V
V
------
K
L
T
A
A
S
I
--
T
A
V
C
---
R
L
P
I
V
--
V
D
A
S
G
---
D
G
A
Y
V
C
K
D
V
A
A
YPDA--------------
26
HHSearch
58.87
25%
-109
- C4 -
1S6D
-
2SS8_HELAN
A:
[19-97]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
L
N
H
C
G
M
Y
L
M
----
K
NLGE
R
----
S
----------------------
Q
VSPR
M
R
E
E
D
------
H
------
K
----
Q
---
L
C
C
M
Q
L
K
N
L
D
----------------------
E
K
-
C
M
C
P
A
I
M
M
M
--
L
N
E
P
-------
M
W------
I
RMR
D
-----
Q
-----------------
V
----------
M
S
M
A
H
N
L
--
P
I
E
C
---
N
L
M
-----------------------------------------
17
HHSearch
58.60
24%
-105
- C4 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
--
Q
D
E
L
N
E
C
K
P
A
V
S
----
K
----
E
----
N
PT--------------------
S
---------------
P
------
S
----
Q
---
P
C
C
T
A
L
Q
H
A
----------------------
D
F
A
-
C
L
C
G
Y
K
N
S
P
W
-
L
G
S
F
---------------
G
---------
V
-----------------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
---
G
L
A
N
A
P
--------------------------------------
2
Fugue
58.03
27%
-85
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
--
Q
D
E
L
N
E
C
K
P
A
V
S
----
K
----
E
----
N
----------------------
P
---------------
T
------
S
----
P
S
Q
-
P
C
C
T
A
L
Q
H
----------------------
A
D
F
A
-
C
L
C
G
Y
K
N
S
P
--
W
L
G
S
-------
F
-------
G
---------
V
-----------------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
---
G
L
A
N
A
------
P
---
T
C
---------------------------
23
HHSearch
56.75
19%
-132
- C4 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
L
P
S
C
R
W
Y
V
T
S
R
TC
G
----
I
----
G
----------------------
P
---------------
R
LP
W
P
E
L
K
----
R
---
R
C
C
R
E
L
A
D
I
----------------------
P
A
Y
-
C
R
C
T
A
L
S
I
L
--
M
D
G
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
-----------------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
---
N
L
A
T
I
---------------------------------------
6
Fugue
54.89
17%
-33
- C4 -
1PSY
-
2SS_RICCO
A:
[1-125]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
VQ
R
K
D
L
S
S
C
E
R
Y
L
R
----
Q
----
S
----
S
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
---------------
Q
------
L
----
Q
---
Q
C
C
N
Q
V
K
Q
V
R
D
E
C
Q
-----------
C
---
E
A
I
K
Y
-
I
A
E
D
Q
I
Q
Q
G
QL
H
G
E
E
-------
S
-------
E
---------
R
-----------------
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
---
G
V
R
C
M
R
Q
T
R
T
N
---------------------------------
20
HHSearch
50.62
16%
-109
- C4 -
1B1U
-
IAAT_ELECO
A:
[15-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
L
D
S
C
R
W
Y
V
S
----
T
R
T
CG
V
----
G
----------------------
P
RLA
T
Q
E
---------
M
------
K
----
A
---
R
C
C
R
Q
L
E
A
I
----------------------
P
A
Y
-
C
R
C
E
A
V
R
I
L
--
M
D
G
V
-------
V
T
PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
--------
A
----------
F
A
P
K
L
V
T
--
E
V
E
C
---
N
L
A
T
I
H
--------------------------------------
24
HHSearch
49.76
23%
-73
- C4 -
1PSY
-
2SS_RICCO
A:
[25-117]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
L
S
S
C
E
R
Y
L
R
----
Q
----
S
S
S
R
R
S
T
GE-------------------
E
VLRMPGDENQQQESQ
Q
------
L
----
Q
---
Q
C
C
N
Q
V
K
Q
V
----------------------
R
D
E
-
C
Q
C
E
A
I
K
Y
I
--
A
E
D
Q
-------
I
Q
Q
G
----
Q
---------
L
HGEE
S
E
R
----------
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
---
G
V
R
-----------------------------------------
38
SP3
49.61
20%
-51
- C3 -
1BS0
-
BIOF_ECOLI
A:
[2-384]
S
W
Q
E
K
I
N
A
A
L
D
A
RRAADALR
R
R
Y
P
V
AQGAGR
W
L
V
A
DDRQYLNFSSNDYLGLSHH
P
Q
I
I
R
A
W
Q
Q
G
A
E
Q
FGIGSGGSGHVSGYS
V
V
H
Q
A
L
E
E
E
L
A
E
W
L
GYS
R
A
L
L
F
IS
G
F
A
A
N
Q
A
V
I
A
A
M
MAKE
D
R
I
A
A
D
RLSH
A
S
L
L
E
A
A
S
L
SP
S
Q
L
R
R
F
AHND
V
T
H
L
A
R
L
L
A
SPCP
G
Q
Q
M
V
V
T
E
GVFSMDGDSAP
L
A
E
I
Q
Q
V
T
Q
Q
H
N
G
W
L
M
V
D
DAHGTGVIGEQGRG
S
C
W
L
Q
KVKPE
L
L
V
V
T
FGKGFG
V
S
G
A
A
V
L
C
S
S
T
V
--
A
D
Y
L
L
Q
F
A
R
H
L
I
----
Y
----
S
----
T
----------------------
S
---------------
M
------
P
----
P
---
A
Q
A
Q
A
L
R
A
S
L
A
V
I
R
-----------
S
D
E
G
D
A
R
R
E
-
K
L
A
A
L
I
T
R
F
--
R
A
G
V
-------
Q
-------
D
---------
L
P
F
T
L
A
DSCSA
I
Q
P
L
I
VG
D
----------
N
S
R
A
L
Q
L
--
A
E
K
L
R
Q
Q
G
C
W
V
T
-
A
I
R
P
P
T
VPA
G
T
A
R
L
-LTLTAAHE
M
Q
D
I
D
R
L
L
E
V
L
H
G
N
G
39
SP3
49.45
16%
-108
- C4 -
1QPO
-
NADC_MYCTU
A:
[116-284]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
--------
G
S
V
V
D
A
L
R
A
V
R
----
N
----
A
----
A
----------------------
P
---------------
D
------
L
----
P
C
E
V
E
V
D
S
-
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
---
V
W
Q
T
Q
-
T
A
V
Q
R
R
D
S
R
--
A
P
T
V
-------
M
L
E
S
S
G
--
G
---------
L
-----------------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
---
G
V
D
Y
---
L
A
V
G
A
---
L
T
H
S
V
R
VL
D
I
G
L
D
M---------------
3
Fugue
47.58
23%
-84
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
--
A
G
Q
L
T
V
C
T
G
A
I
A
----
G
----
G
----
A
----------------------
R
---------------
P
------
T
----
A
---
A
C
C
S
S
L
R
-------------------------
A
Q
-
Q
G
C
F
C
Q
F
A
K
--
D
P
R
Y
-------
G
-------
R
Y--------
V
-----------------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
---
G
I
A
L
P
T
----------
C
H
--------------------------
4
Fugue
46.77
23%
-50
- C4 -
4HLB
-
?
A:
[21-115]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
D
R
F
--
T
A
F
E
E
E
L
L
A
R
Y
A
----
D
----
K
----
G
-----------------------------------------------------------
I
R
S
V
D
V
A
A
Y
AKGIDI
V
F
---
V
---
A
A
D
R
K
M
T
R
A
E
F
S
A
I
A
--
S
R
S
I
-------
R
-------
E
---------
L
-----------------
K
----------
E
R
F
G
F
D
K
--
D
V
P
I
---
G
A
V
L
D
Y
K
K
D
A
A
T
---
D
T
R
T
R
F
VLKLR------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AITCGTVTVSLAPCLNYLKKGGPVPPACCNGIKSLNAAAKTTADRQAACNCLKTASTSIAGINLSYASSLPGKCGVNVPYKISPSTDCSKVQ
40
98.48
100%
-134
- C- -
M040
-
A:
[1-93]
A
I
T
C
G
T
V
T
V
S
L
A
P
C
L
N
Y
L
K
K
G
G
P
V
P
P
A
C
C
N
G
I
K
S
L
N
A
A
A
K
T
T
A
D
R
Q
A
A
C
N
C
L
K
T
A
S
T
S
I
A
G
I
N
L
S
Y
A
S
S
L
P
G
K
C
G
V
N
V
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
47
97.99
100%
-137
- C- -
M047
-
A:
[1-93]
A
I
T
C
G
T
V
T
V
S
L
A
P
C
L
N
Y
L
K
K
G
G
P
V
P
P
A
C
C
N
G
I
K
S
L
N
A
A
A
K
T
T
A
D
R
Q
A
A
C
N
C
L
K
T
A
S
T
S
I
A
G
I
N
L
S
Y
A
S
S
L
P
G
K
C
G
V
N
V
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
44
94.84
100%
-131
- C- -
M044
-
A:
[1-93]
A
I
T
C
G
T
V
T
V
S
L
A
P
C
L
N
Y
L
K
K
G
G
P
V
P
P
A
C
C
N
G
I
K
S
L
N
A
A
A
K
T
T
A
D
R
Q
A
A
C
N
C
L
K
T
A
S
T
S
I
A
G
I
N
L
S
Y
A
S
S
L
P
G
K
C
G
V
N
V
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
45
94.22
100%
-129
- C- -
M045
-
A:
[1-93]
A
I
T
C
G
T
V
T
V
S
L
A
P
C
L
N
Y
L
K
K
G
G
P
V
P
P
A
C
C
N
G
I
K
S
L
N
A
A
A
K
T
T
A
D
R
Q
A
A
C
N
C
L
K
T
A
S
T
S
I
A
G
I
N
L
S
Y
A
S
S
L
P
G
K
C
G
V
N
V
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q