@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-05 )
ESAISCGTVTSDLTPCVGYLTSGKGKPTPNCCGGVKKLAGLANTTPARRAVCGCLKQAYSQFPNANSAAVSGLPGACGVNLPFKISLQTNCNTIN
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------...-..---....10--........20----.---.----.---.------------.----------------.-----------.---.30---........40..-----------......50.......-.60----------.-.-------.---------------.----.-------.----------...70..--......80...--------------.....90....--------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------ESA-IS---CGTVTS--DLTPCVGYLT----S---G----K---G------------K----------------P-----------T---PNC---CGGVKKLAGLAN-----------TTPARRAVCGCLKQA-YS-----------Q-F-------P---------------N----A-------N----------SAAVSGL--PGACGVNLPFK--------------ISLQTNCNTIN--------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
93.66
47%
-141
- C3 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
I
T
---
C
G
Q
V
T
S
--
N
L
A
P
C
L
A
Y
L
R
----
N
---
T
----
G
---------------------------------
P
-----------
L
---
G
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
-
A
G
-----------
A
-
I
-------
S
---------------
G
----
I
-------
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
--------------
I
S
P
S
T
D
C
S
K
V
Q
--------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
92.58
48%
-138
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
---
C
G
Q
V
Q
G
--
N
L
A
Q
C
I
G
F
L
Q
----
K
---
G
--------
G
------------
V
----------------
V
-----------
P
---
P
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
A
A
-
A
G
-----------
A
-
V
-------
R
---------------
G
----
I
-------
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
--------------
I
S
T
S
T
N
C
N
S
I
N
--------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
90.45
47%
-133
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
I
T
---
C
G
Q
V
S
S
--
S
L
A
P
C
I
P
Y
V
R
----
G
---
G
--------
G
------------
A
----------------
V
-----------
P
---
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
-
S
A
-----------
S
-
V
-------
P
---------------
G
----
V
-------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
--------------
I
S
A
S
T
N
C
A
T
V
K
--------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
87.62
41%
-114
- C3 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
I
S
---
C
G
Q
V
A
S
--
A
I
A
P
C
I
S
Y
A
R
----
G
---
Q
----
G
---
S
------------
G
----------------
P
-----------
S
---
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
-----------
G
-
V
-------
S
---------------
G
----
L
-------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
--------------
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
11
SP3
87.53
40%
-127
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
I
S
---
C
G
Q
V
A
S
--
A
I
A
P
C
I
S
Y
A
R
----
G
---
Q
----
G
---
S
------------
G
----------------
P
-----------
S
---
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
-----------
G
-
V
-------
S
---------------
G
----
L
-------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
--------------
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
84.35
39%
-126
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
---
C
G
H
V
D
S
--
L
V
R
P
C
L
S
Y
V
Q
----
G
---
G
--------
P
------------
G
----------------
P
-----------
S
---
G
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
-
A
R
-----------
G
-
I
-------
H
---------------
N
----
L
-------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
--------------
I
S
L
N
I
D
C
S
R
V
---------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
60.26
18%
-134
- C3 -
1W2Q
-
CONG_ARAHY
A:
[22-114]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
--
N
L
K
P
C
E
Q
H
I
M
----
Q
---
R
I
MG-
E
QE-
Q
Y-----------
D
----------------
S
YDIRSTR
S
S
D
Q
Q
---
Q
R
C
---
C
D
E
L
N
E
M
E
----------------
N
-
T
Q
G
C
M
C
E
A
L
Q
Q
I
-
M
E
-----------
N
-
Q
-------
C
DRLQ-----------
D
----
R
-------
Q
MV
Q
Q
F
-----
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
54.67
20%
-119
- C3 -
1SM7
-
?
A:
[13-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
L
R
A
C
Q
Q
W
I
R
----
Q
---
Q
----
L
AG
S
P
F
S
E
NQWGPQQGP
S
----------------
L
-----------
R
---
E
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
-
A
K
-----------
S
-
V
-------
R
VQ-------------
G
Q---
H
GPFQST
R
I
----------
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
53.07
16%
-135
- C3 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
L
P
S
C
R
W
Y
V
T
S
R
TC
G
---
I
----
G
---
P
------------
R
----------------
L
P
W
P
E
L
------
K
---
R
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
-
M
D
-----------
G
-
A
-------
I
P
P
G
PDAQ--------
L
E
G
R
-
L
-------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
51.52
23%
-127
- C3 -
3OB4
-
?
A:
[429-485]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
C
---
C
N
E
L
N
E
F
E
N
-----------------
N
Q
R
C
M
C
E
A
L
Q
Q
I
-
M
E
-----------
N
-
Q
S
DRL---
Q
---------------
G
----
R
-------
Q
Q
E
Q
Q
F
-----
K
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
49.05
21%
-85
- C3 -
1PSY
-
2SS_RICCO
A:
[25-121]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
L
S
S
C
E
R
Y
L
R
----
Q
---
S
S
S
R
-
R
---
S
T
G----------
E
EVLRMPGDENQQQESQ
Q
-----------
L
---
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
-----------
D
-
Q
-------
I
Q
Q
G
QLH---------
G
----
E
E
S
E
R
---
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
M
--------------
R
Q
-----------------------------------------------------------------------------------------------------------------------------------------------
16
SP3
47.88
13%
-121
- C3 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------MCYP
G
Q
A
-
F
Q
-------
V
P
--
A
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
G
----
S
---
Q
------------
V
----------------
P
-----------
E
A
V
L
R
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
-----------
S
-
M
Y
K
E
HGAF
P
---------------
R
----
C
-------
R
R
E
V
V
------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
V
----------------
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA-----------------------------------------------------------------------------------------------------------------------------
15
SP3
45.85
13%
-71
- C3 -
1A0P
-
?
?:
[3-292]
------------------------------------------------------------------------------------------------------------------------------------------------------Q
D
L
A
R
I
E
Q
F
L
D
A
L
W
L
E
K
N
-
L
A
E
N
T
L
N
A
Y
R
R
--
D
L
S
M
M
V
E
W
L
H
----
H
---
R
----
G
---
L
------------
T
----------------
L
-----------
A
---
T
A
Q
---
S
D
D
L
Q
A
L
L
A
E
R
L
-----------
S
S
A
R
L
L
S
A
V
R
R
L
F
Q
Y
-
L
Y
R
E
KFREDDPSA
H
-
L
-------
K
---------------
D
----
L
-------
S
----------
E
A
Q
V
E
R
L
--
L
Q
A
P
L
I
D
Q
P
L
E
L
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D
K
A
M
L
E
V
L
Y
A
TG
L
R
V
S
-
E
L
V
G
L
T
MSDISLRQG
V
V
R
V
I
G
KGNK
E
R
L
V
P
LG
E
E
A
V
Y
W
L
E
T
Y
L
E
HG
R
P
W
L
L
N
GVSIDVLFPSQRAQQMT
R
Q
T
F
W
H
R
I
K
H
Y
A
V
L
A
GIDSEKLS
P
H
V
L
R
H
A
F
A
T
H
L
L
N
HGADLRVVQMLLSDLS
T
T
Q
I
Y
T
H
V
A
T
E
R
L
R
Q
L
H
Q
27
HHSearch
45.68
21%
-99
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-75]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
-
D
L
---
C
G
M
S
Q
D
--
E
L
N
E
C
K
P
A
V
S
----
K
---
E
----
N
---
P
T-----------
S
----------------
P
-----------
S
---
Q
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
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S
P
W
L
G
-----------
S
-
F
-----------------------
G
----
V
-------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
43.81
12%
-107
- C3 -
1B1U
-
IAAT_ELECO
A:
[15-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
L
D
S
C
R
W
Y
V
S
----
T
---
R
T
CGV
G
---
P
------------
R
LA
T
Q
E
-----------
M
-----------
K
---
A
R
C
---
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
V
R
I
L
-
M
D
-----------
G
-
V
-------
V
T
PSG
Q
H
E
G
RLLQDLP
G
CP--
R
Q
V
Q
R
---
A
----------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
43.59
19%
-77
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
-
D
L
---
C
G
M
S
Q
D
--
E
L
N
E
C
K
P
A
V
S
K---
E
---
N
----
P
---
T
------------
S
----------------
P
-----------
S
---
Q
P
C
---
C
T
A
L
Q
H
A
D
-------------------
F
A
C
L
C
G
Y
K
N
S
P
-
W
L
-----------
G
-
S
-------
F
---------------
G
----
V
-------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
--------------------
P
T
C
------------------------------------------------------------------------------------------------------------------------------------------
12
SP3
43.20
20%
-70
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
---
C
--
N
A
G
--
Q
L
T
V
C
T
G
A
I
A
----
G
---
G
----
A
---
R
-----------------------------
P
-----------
T
---
A
A
C
---
C
S
S
L
R
A
--------------------
Q
Q
G
C
F
C
Q
F
A
K
D
P
-
R
Y
-----------
G
---------
R
---------------
Y
----
V
-------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
---------------------
T
C
H
-----------------------------------------------------------------------------------------------------------------------------------------
19
SP3
42.91
8%
-108
- C3 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLG
D
A
A
L
I
K
---
D
N
H
V
A
A
A
G
S
V
V
D
A
L
R
A
V
R
-------------
N
---
A
------------
A
----------------
P
-----------
D
---
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
-----------
T
-
V
M
L
E
S
S
--
G
---------------
G
----
L
-------
S
----------
L
Q
T
A
A
T
Y
--
A
E
-
T
G
V
D
---
Y
--------------
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M------------------------------------------------------------------------------------------------------------------------------
18
SP3
41.92
8%
-108
- C3 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLG
D
A
A
L
I
K
---
D
N
H
V
A
A
A
G
S
V
V
D
A
L
R
A
V
R
-------------
N
---
A
------------
A
----------------
P
-----------
D
---
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
-----------
T
-
V
M
L
E
S
S
--
G
---------------
G
----
L
-------
S
----------
L
Q
T
A
A
T
Y
--
A
E
-
T
G
V
D
---
Y
--------------
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
40.86
15%
-93
- C3 -
2LVF
-
?
A:
[16-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
M
L
S
H
C
R
M
Y
M
R
----
Q
Q
M
E
E
----
S
---
T
------------
Y
----------------
Q
TMPRRGMEP
H
-
M
---
S
E
C
---
C
E
Q
L
E
G
M
-------------------
D
E
S
C
R
C
E
G
L
R
M
M
-
M
R
-----------
M
M
Q
Q
K
EM
Q
P
-
R
---------------
G
E
Q
M
R
R
-------
M
----------
M
R
L
A
E
N
I
--
P
S
R
C
N
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ESAISCGTVTSDLTPCVGYLTSGKGKPTPNCCGGVKKLAGLANTTPARRAVCGCLKQAYSQFPNANSAAVSGLPGACGVNLPFKISLQTNCNTIN
41
97.35
100%
-148
- C- -
M041
-
A:
[1-116]
E
S
A
I
S
C
G
T
V
T
S
D
L
T
P
C
V
G
Y
L
T
S
G
K
G
K
P
T
P
N
C
C
G
G
V
K
K
L
A
G
L
A
N
T
T
P
A
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
F
P
N
A
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N
47
36.21
100%
5
- C- -
M047
-
A:
[3-95]
E
S
A
I
S
C
G
T
V
T
S
D
L
T
P
C
V
G
Y
L
T
S
G
K
G
K
P
T
P
N
C
C
G
G
V
K
K
L
A
G
L
A
N
T
T
P
A
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
F
P
N
A
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N
44
35.37
100%
-1
- C- -
M044
-
A:
[3-126]
E
S
A
I
S
C
G
T
V
T
S
D
L
T
P
C
V
G
Y
L
T
S
G
K
G
K
P
T
P
N
C
C
G
G
V
K
K
L
A
G
L
A
N
T
T
P
A
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
F
P
N
A
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N
46
33.10
100%
10
- C- -
M046
-
A:
[3-95]
E
S
A
I
S
C
G
T
V
T
S
D
L
T
P
C
V
G
Y
L
T
S
G
K
G
K
P
T
P
N
C
C
G
G
V
K
K
L
A
G
L
A
N
T
T
P
A
R
R
A
V
C
G
C
L
K
Q
A
Y
S
Q
F
P
N
A
N
S
A
A
V
S
G
L
P
G
A
C
G
V
N
L
P
F
K
I
S
L
Q
T
N
C
N
T
I
N