@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-06 )
LSCSVVASNLAQCLTYLRNGGAVPPACCKGVGTLNNAAKTTQDRRDACNCIKTTAAQLGGVNSNYAAALPGLCHVNIPYKISTSTNCASIK
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------...--...--..--.--10........----20---.----------------------.-------------------.------------..----....30........-----------40........50...-...-.-------.-------60--------.-------.----------.----------......--70.....-...80........90---------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSC--SVV--AS--N--LAQCLTYLRN----G----G----------------------A-------------------V------------PP----ACCKGVGTLNNAAK-----------TTQDRRDACNCIKTT-AAQ-L-------G-------G---------V-------N----------S----------NYAAAL--PGLCHVN-IPYKISTSTNCASIK---------
11
HHSearch
95.35
60%
-124
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[2-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
--
G
Q
V
--
S
S
--
S
--
L
A
P
C
I
P
Y
V
R
G
----
G
----
G
----------------------
A
-------------------
V
------------
P
P
----
A
C
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
-
S
A
S
-
V
-------
P
-------
G
---------
V
-------
N
----------
P
----------
N
N
A
A
A
L
--
P
G
K
C
G
V
S
-
I
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
---------
14
HHSearch
93.84
56%
-126
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
--
G
Q
V
--
Q
G
--
N
--
L
A
Q
C
I
G
F
L
Q
K
----
G
----
G
----------------------
V
-------------------
V
------------
P
P
----
S
C
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
A
A
-
A
G
A
-
V
-------
R
-------
G
---------
I
-------
N
----------
P
----------
N
N
A
E
A
L
--
P
G
K
C
G
V
N
-
I
P
Y
K
I
S
T
S
T
N
C
N
S
I
N
---------
12
HHSearch
91.92
52%
-118
- C4 -
1T12
-
NLTP1_TOBAC
A:
[2-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
--
G
Q
V
--
T
S
--
N
--
L
A
P
C
L
A
Y
L
R
N
----
T
----
G
------------------------------------------
P
------------
L
G
----
R
C
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
-
A
G
A
-
I
-------
S
-------
G
---------
I
-------
N
----------
L
----------
G
K
A
A
G
L
--
P
S
T
C
G
V
N
-
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
---------
32
SP3
88.43
51%
-126
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
C
--
G
Q
V
--
A
S
--
A
--
I
A
P
C
I
S
Y
A
R
G
----
Q
----
G
----------------------
S
G------------------
P
------------
S
A
----
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
-
V
-------
S
-------
G
---------
L
-------
N
----------
A
----------
G
N
A
A
S
I
--
P
S
K
C
G
V
S
-
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
---------
13
HHSearch
85.00
52%
-118
- C4 -
1AFH
-
NLTP_MAIZE
A:
[2-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
C
--
G
Q
V
--
A
S
--
A
--
I
A
P
C
I
S
Y
A
R
G
----
Q
----
G
----------------------
S
G------------------
P
------------
S
A
----
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
-
V
-------
S
-------
G
---------
L
-------
N
----------
A
----------
G
N
A
A
S
I
--
P
S
K
C
G
V
S
-
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
---------
16
HHSearch
82.64
37%
-130
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
--
G
H
V
--
D
S
--
L
--
V
R
P
C
L
S
Y
V
Q
G
----
G
----
P
----------------------
G
-------------------
P
------------
S
G
----
Q
C
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
-
A
R
G
-
I
-------
H
-------
N
---------
L
-------
N
----------
E
----------
D
N
A
R
S
I
--
P
P
K
C
G
V
N
-
L
P
Y
T
I
S
L
N
I
D
C
S
R
V
----------
28
HHSearch
63.99
23%
-146
* C4 *
1HSS
-
IAA1_WHEAT
A:
[15-106]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
A
--
L
P
A
C
R
P
L
L
R
L
Q
C
N
-
G
----
S
----------------------
Q
VP
E
A
---------------
V
------------
L
R
----
D
C
C
Q
Q
L
A
H
I
S
-------------------
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
-
M
-------
Y
K
E
H-----GAFPRCR
R
E
V
-------
V
----------
K
----------
L
T
A
A
S
I
--
T
A
V
C
R
L
P
-
I
V
V
D
--------------------
25
HHSearch
60.87
24%
-134
- C4 -
1SM7
-
?
A:
[13-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
--
L
R
A
C
Q
Q
W
I
R
Q
QLA-
G
----
S
P
F
S
E
NQWGPQQGP---------
S
-------------------
L
------------
R
E
----
Q
C
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
-
A
K
S
-
V
-------
R
VQ-----
G
Q--------
H
-------
G
PFQST
R
I
---
Y
----------
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
-
Q
I
----------------------
40
SP3
60.29
18%
-139
- C4 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
C
YP
G
Q
A
FQ
V
P
--
A
--
L
P
A
C
R
P
L
L
R
L
Q
C
N
-
G
----
S
----------------------
Q
-------------------
V
------------
P
E
A
V
L
R
D
C
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
-
M
Y
K
E
HGAF
P
-------
R
---------
C
-------
R
R
E
V
V
------
K
----------
L
T
A
A
S
I
--
T
A
V
C
R
L
P
-
I
V
--
V
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA
24
HHSearch
58.86
17%
-138
- C4 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
--
L
P
S
C
R
W
Y
V
T
S
R
TCG
I
----
G
----------------------
P
R------------------
L
P
W
P
E
L
-------
K
R
----
R
C
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
-
M
D
G
-
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
-------
E
D
LPGCP
R
E
V
Q
R
----------
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
-
T
I
----------------------
30
HHSearch
57.72
17%
-91
- C4 -
1W2Q
-
CONG_ARAHY
A:
[22-114]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
--
N
--
L
K
P
C
E
Q
H
I
M
Q
R
I
M-
G
----
E
QEQ-------------------
Y
-------------------
D
SYDIRSTR
S
S
D
Q
Q
Q
----
R
C
C
D
E
L
N
E
M
E
----------------
N
-
T
Q
G
C
M
C
E
A
L
Q
Q
I
-
M
E
N
-
Q
-------
C
DRLQ---
D
---------
R
-------
Q
MV
Q
Q
F
-----
K
----------
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
-
A
P
----------------------
10
Fugue
52.55
23%
-74
- C4 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
--
R
Q
E
--
V
Q
--
R
KD
L
S
S
C
E
R
Y
L
R
Q
----
S
----
S
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
-------------------
Q
------------
L
Q
----
Q
C
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
D
-
Q
-------
I
-------
Q
---------
Q
-------
G
----------
Q
LHGEE
S
E
R
V
A
Q
R
A
G
E
I
--
V
S
S
C
--
G
-
V
R
C
M
R
Q
T
R
T
N
--------------
2
Fugue
52.36
21%
-109
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AI
D
L
C
--
G
M
S
--
Q
D
--
E
--
L
N
E
C
K
P
A
V
S
K
----
E
----
N
----------------------
P
-------------------
T
------------
S
P
S
Q
--
P
C
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
-
W
L
G
-
S
-------
F
-------
G
---------
V
-------
D
----------
P
----------
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
-
N
A
------
P
T
C
-------------
8
Fugue
52.03
15%
-52
- C4 -
3EUJ
-
B:
[63-152]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
Q
--
T
Q
I
--
V
T
--
A
--
I
Q
A
E
L
A
H
F
R
N
----
T
----
A
-------------------------------------------------------
Q
P
----
I
N
L
G
A
V
L
Q
E
Q
L
A
R
Y
-----------
P
Q
S
R
H
F
D
V
A
R
I
I
V
D
Q
-
A
V
K
-
L
-------
G
-------
M
---------
A
-------
S
----------
Q
----------
D
H
Q
A
V
Y
--
P
V
W
Q
P
I
D
D
F
S
A
A
V
Q
A
H
L
I
D
Q
Y
D
K
---------
31
HHSearch
52.01
21%
-111
- C4 -
1S6D
-
2SS8_HELAN
A:
[19-97]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
M
--
L
N
H
C
G
M
Y
L
M
K
----
N
LGER
S
----------------------
Q
VSPR
M
R
E
E
D
----------
H
------------
K
Q
----
L
C
C
M
Q
L
K
N
L
D
-------------------
E
K
C
M
C
P
A
I
M
M
M
-
L
N
E
-
P
-------
M
W------
I
RMR
D
-----
Q
-------
V
----------
M
----------
S
M
A
H
N
L
--
P
I
E
C
N
L
M
-------------------------
23
HHSearch
51.65
25%
-80
- C4 -
1PSY
-
2SS_RICCO
A:
[25-121]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
--
L
S
S
C
E
R
Y
L
R
Q
----
S
S
S
R
-
R
----------------------
S
T
GEEVLRMPGDENQQQESQ
Q
------------
L
Q
----
Q
C
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
D
-
Q
-------
I
Q
Q
-----
G
Q--------
L
HGEE
S
E
R
V
----------
A
----------
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
---
C
M
R
Q
------------------
38
SP3
50.69
16%
-108
- C4 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
--
N
H
V
--
A
A
A
G
S
--
V
V
D
A
L
R
A
V
R
N
----
A
----
A
----------------------
P
-------------------
D
------------
L
P
C
E
V
-
E
V
D
S
-
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
-
V
M
L
E
S
S
--
G
-------
G
---------
L
-------
S
----------
L
----------
Q
T
A
A
T
Y
---
A
E
T
G
V
D
-
Y
---
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M-
17
HHSearch
50.53
20%
-129
- C4 -
2RKN
2
DIRL1_ARATH
A:
[4-75]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
C
--
G
M
S
--
Q
D
--
E
--
L
N
E
C
K
P
A
V
S
K
----
E
----
N
PT--------------------
S
-------------------
P
------------
S
Q
----
P
C
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
S
-
F
---------------
G
---------
V
-------
D
----------
P
----------
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
-
N
A
P
---------------------
36
SP3
50.39
16%
-108
- C4 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
--
N
H
V
--
A
A
A
G
S
--
V
V
D
A
L
R
A
V
R
N
----
A
----
A
----------------------
P
-------------------
D
------------
L
P
C
E
V
-
E
V
D
S
-
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
-
V
M
L
E
S
S
--
G
-------
G
---------
L
-------
S
----------
L
----------
Q
T
A
A
T
Y
---
A
E
T
G
V
D
-
Y
---
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M-
29
HHSearch
49.71
20%
-89
- C4 -
2LVF
-
?
A:
[16-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
M
--
L
S
H
C
R
M
Y
M
R
Q
Q
M
E
-
E
----
S
----------------------
T
-------------------
Y
QTMPRRGMEP
H
-
M
S
----
E
C
C
E
Q
L
E
G
M
-------------------
D
E
S
C
R
C
E
G
L
R
M
M
-
M
R
M
M
Q
Q
K
EM
Q
P
-
R
-------
G
E
Q
M
R
-----
R
-------
M
----------
M
----------
R
L
A
E
N
I
--
P
S
R
C
N
L
S
-------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
LSCSVVASNLAQCLTYLRNGGAVPPACCKGVGTLNNAAKTTQDRRDACNCIKTTAAQLGGVNSNYAAALPGLCHVNIPYKISTSTNCASIK
46
96.70
100%
-133
- C- -
M046
-
A:
[1-124]
L
S
C
S
V
V
A
S
N
L
A
Q
C
L
T
Y
L
R
N
G
G
A
V
P
P
A
C
C
K
G
V
G
T
L
N
N
A
A
K
T
T
Q
D
R
R
D
A
C
N
C
I
K
T
T
A
A
Q
L
G
G
V
N
S
N
Y
A
A
A
L
P
G
L
C
H
V
N
I
P
Y
K
I
S
T
S
T
N
C
A
S
I
K
42
96.63
100%
-128
- C- -
M042
-
A:
[1-113]
L
S
C
S
V
V
A
S
N
L
A
Q
C
L
T
Y
L
R
N
G
G
A
V
P
P
A
C
C
K
G
V
G
T
L
N
N
A
A
K
T
T
Q
D
R
R
D
A
C
N
C
I
K
T
T
A
A
Q
L
G
G
V
N
S
N
Y
A
A
A
L
P
G
L
C
H
V
N
I
P
Y
K
I
S
T
S
T
N
C
A
S
I
K
48
96.56
100%
-127
- C- -
M048
-
A:
[1-124]
L
S
C
S
V
V
A
S
N
L
A
Q
C
L
T
Y
L
R
N
G
G
A
V
P
P
A
C
C
K
G
V
G
T
L
N
N
A
A
K
T
T
Q
D
R
R
D
A
C
N
C
I
K
T
T
A
A
Q
L
G
G
V
N
S
N
Y
A
A
A
L
P
G
L
C
H
V
N
I
P
Y
K
I
S
T
S
T
N
C
A
S
I
K
43
95.92
100%
-139
- C- -
M043
-
A:
[1-113]
L
S
C
S
V
V
A
S
N
L
A
Q
C
L
T
Y
L
R
N
G
G
A
V
P
P
A
C
C
K
G
V
G
T
L
N
N
A
A
K
T
T
Q
D
R
R
D
A
C
N
C
I
K
T
T
A
A
Q
L
G
G
V
N
S
N
Y
A
A
A
L
P
G
L
C
H
V
N
I
P
Y
K
I
S
T
S
T
N
C
A
S
I
K