@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 531_tII_PICSI: (2014-05-10 )
AATCDPMALSPCATAMFSPSKPKPSADCCNKLKLQAKCMCKYATDPKFKGYIQSPDAKRVADSCHVPFPKC
Atome Classification :
(20 SA)
---------------------------------------------------------------....--.--.-.--..10-........20.-..-----.....30..-.-----------.-----.-...40...-.-.-.------------..-----50--------.-----.....-..60.....-.-..-------70-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------AATC--D--P-M--ALS
P
-
C
A
T
AMFSPSKP-KP-----
S
A
D
C
C
N
K
L
K
-
L
-----------
Q
-----
A
-
K
C
M
C
KYAT-D-P-K------------FK-----
G
Y
--------I-----QSP
D
A
-
K
R
V
A
D
SCHV-P-FP-------KC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
93.65
42%
-100
- C4 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-----------------------------------------------------------------
A
C
--
Q
--
A
-
S
--
Q
L
A
V
-
C
A
S
A
I
L
S
G
A
K
P
--------
S
G
E
C
C
G
N
L
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
Y
A
K
-
D
-
P
-
T
------------
Y
G
-----
Q
Y
--------
I
-----
R
S
P
H
A
-
R
D
T
L
T
S
C
G
L
-
A
-
V
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
87.64
35%
-104
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
----------------------------------------------------------------
A
G
C
--
N
--
A
-
G
--
Q
L
T
V
-
C
T
G
A
I
A
G
G
A
R
P
--------
T
A
A
C
C
S
S
L
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
-
D
-
P
-
R
------------
Y
G
-----
R
Y
--------
V
-----
N
S
P
N
A
-
R
K
A
V
S
S
C
G
I
-
A
-
L
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
87.22
33%
-104
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
--
N
--
A
-
G
--
Q
L
T
V
-
C
T
G
A
I
A
G
G
A
---
R
P
-----
T
A
A
C
C
S
S
L
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
-
D
-
P
-
R
------------
Y
G
-----
R
Y
--------
V
-----
N
S
P
N
A
-
R
K
A
V
S
S
C
G
I
-
A
-
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
85.64
35%
-97
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
--
N
--
A
-
G
--
Q
L
T
V
-
C
T
G
A
I
--
A
G
G
A
-
R
P
-----
T
A
A
C
C
S
S
L
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
-
D
-
P
-
R
------------
Y
G
-----
R
Y
--------
V
-----
N
S
P
N
A
-
R
K
A
V
S
S
C
G
I
-
A
-
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
78.25
22%
-102
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------A
I
D
L
C
GM
S
--
Q
-
D
--
E
L
N
E
-
C
K
P
A
V
S
K
E
N
P
T
-
S
P
-----
S
Q
P
C
C
T
A
L
Q
H
A
-----------
D
-----
F
-
A
C
L
C
G
Y
K
N
-
S
-
P
-
W
------------
L
G
-----
S
F
G-------
V
-----
D
P
E
L
A
-
S
A
L
P
K
Q
C
G
L
-
A
-
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
77.09
28%
-88
- C4 -
1AFH
-
NLTP_MAIZE
A:
[1-80]
---------------------------------------------------------------
A
I
S
C
--
G
--
Q
-
V
A
S
A
I
A
P
-
C
I
S
Y
A
R
G
Q
G
S
--
G
P
-----
S
A
G
C
C
S
G
V
R
-
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
--
L
K
-
N
-
A
-
A
-------------
A
-----
G
V
SG------
L
-----
N
A
G
N
A
-
A
S
I
P
S
K
C
G
V
-
S
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
76.44
23%
-90
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------
A
I
S
C
--
G
Q
V
A
-
S
--
A
I
A
P
-
C
I
S
Y
A
R
G
Q
G
S
G
--
P
-----
S
A
G
C
C
S
G
V
R
-
S
-----------
L
-----
N
-
N
A
----
A
R
-
T
-
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
V
SG------
L
-----
N
A
G
N
A
-
A
S
I
P
S
K
C
G
V
-
S
-
I
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
76.04
29%
-94
- C4 -
1T12
-
NLTP1_TOBAC
A:
[1-78]
---------------------------------------------------------------
A
I
T
C
--
G
--
Q
-
V
T
S
N
L
A
P
-
C
L
A
Y
L
R
N
T
G
-
P
--------
L
G
R
C
C
G
G
V
K
-
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
--
L
K
-
S
-
A
-
A
-------------
G
-----
A
I
SG------
I
-----
N
L
G
K
A
-
A
G
L
P
S
T
C
G
V
-
N
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
73.27
23%
-97
- C4 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
------------------------------------------------------------------------
Q
-
D
--
E
L
N
E
-
C
K
P
A
V
S
K
E
N
P
T
-
S
P
-----
S
Q
P
C
C
T
A
L
Q
-
H
-----------
A
-----
D
F
A
C
L
C
G
Y
K
N
-
S
-
P
-
W
------------
L
G
-----
S
F
G-------
V
-----
D
P
E
L
A
-
S
A
L
P
K
Q
C
G
L
-
A
-
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
71.26
25%
-86
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[1-79]
---------------------------------------------------------------
M
I
T
C
--
G
--
Q
-
V
S
S
S
L
A
P
-
C
I
P
Y
V
R
G
G
G
A
V
--------
P
P
A
C
C
N
G
I
R
-
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
--
L
K
-
Q
-
L
-
S
-------------
A
-----
S
V
PG------
V
-----
N
P
N
N
A
-
A
A
L
P
G
K
C
G
V
-
S
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
66.19
23%
-66
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
------------------------------------------------------------------------
Q
-
G
--
N
L
A
Q
-
C
I
G
F
L
Q
K
G
G
V
V
--------
P
P
S
C
C
T
G
V
K
-
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
L
K
A
A
-
A
-
G
-
A
------------
V
R
------
G
--------
I
-----
N
P
N
N
A
-
E
A
L
P
G
K
C
G
V
-
N
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
65.09
23%
-63
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
------------------------------------------------------------------------
D
-
S
--
L
V
R
P
-
C
L
S
Y
V
Q
G
G
P
G
---
P
-----
S
G
Q
C
C
D
G
V
K
-
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
L
K
G
I
-
A
-
R
-
G
------------
I
H
------
N
--------
L
-----
N
E
D
N
A
-
R
S
I
P
P
K
C
G
V
-
N
-
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
58.39
21%
-94
- C4 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
-----------------------------------------------------------------------------
D
L
S
I
-
C
L
N
I
L
G
G
-
S
L
G
-
T
------
V
D
D
C
C
A
L
I
G
-
G
-----------
L
G
D
I
E
A
I
-
V
C
L
C
I
Q
L
R
-
A
----------------
L
G
-----
I
---------
L
-----
N
L
N
R
N
L
Q
L
I
L
N
S
C
G
R
-
S
-
Y
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
53.13
16%
-87
- C4 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YSPN
S
P
A
Q
P
Q
--
T
--
A
-
G
--
T
L
T
L
-
L
P
V
A
L
R
A
P
V
T
A
G
Q
L
-----
A
V
E
N
G
H
Y
V
V
-
E
-----------
T
-----
L
-
A
R
A
C
D
G
C
L
-
N
-
G
-
E
------------
F
A
-----
A
L
--------
I
-----
T
G
P
V
H
-
K
G
V
I
N
D
A
G
I
-
P
-
F
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
29
SP3
51.24
9%
-104
- C4 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-------------------------------------------------------------PR
G
S
A
L
--
S
--
D
-
T
--
E
R
A
Q
-
L
D
V
M
K
L
L
N
V
----
S
-----
L
H
E
M
S
R
K
I
S
-
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
-
D
-
P
V
S
------------
Y
G
-----
T
S
KRAPRRKA
L
-----
S
V
R
D
E
-
R
N
V
I
R
A
A
S
N
-
S
-
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
50.64
16%
-73
* C4 *
1F9M
-
TRXF_SPIOL
A:
[10-121]
-------------------------------------------------------------ME
A
I
V
G
--
K
--
V
-
T
--
E
V
N
K
D
T
F
W
P
I
V
K
A
A
G
D
-
K
P
V
V
L
D
M
F
T
Q
W
C
G
P
C
K
-
A
-----------
M
-----
A
-
P
K
Y
E
K
L
A
E
-
E
Y
L
-
D
V
I
----------
F
L
-----
K
L
--------
D
-----
C
N
Q
E
N
-
K
T
L
A
K
E
L
G
I
-
R
V
V
P
-------
T
F
K
I
L
K
ENSVV
G
E
V
T
G
AK
Y
D
K
L
L
E
A
I
Q
A
A
R
S--------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
50.36
11%
-89
- C4 -
1LU4
-
A:
[1001-1134]
--------------------------------------------------ADERLQ
F
T
A
T
T
LS
G
A
P
F
--
D
--
G
-
A
--
S
L
Q
G
-
K
P
A
V
L
W
F
W
T
P
W
------------
C
P
F
C
N
-
A
-----------
E
-----
A
-
P
S
L
S
Q
V
A
A
A
N
-
P
-
A
------------
V
T
-----
F
V
--------
G
I
A
T
RA
D
V
G
A
M
-
Q
S
F
V
S
K
Y
N
L
-
N
-
F
T
-------
N
L
NDADG
V
I
W
A
R
Y
NVPWQP
A
F
V
F
Y
R
ADG
T
S
T
F
V
N
N
PTAAMS
Q
D
E
L
S
G
R
V
A
A
L-----------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
49.38
18%
-71
- C4 -
1KNG
-
CYCY_BRADU
A:
[50-193]
---------------------------------------------------RPAPQ
T
A
L
P
P
LE
G
L
Q
A
--
D
--
N
-
V
--
Q
V
P
G
-
L
D
P
A
A
F
K
G
----
K
V
S
L
V
N
V
W
A
S
W
C
V
P
C
H
-
D
-----------
E
-----
A
-
P
L
L
T
E
L
G
K
-
D
-
K
-
R
------------
F
Q
L
V
G
I
N
Y
K
--------
D
-----
A
A
D
N
A
-
R
R
F
L
G
R
Y
G
N
-
P
-
F
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L-------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
46.81
16%
-75
- C4 -
1ERV
-
?
?:
[1-105]
------------------------------------------------------------M
V
K
Q
I
E
---
S
--
K
-
T
--
A
F
-----
Q
E
A
L
D
A
A
G
D
-
K
L
V
V
V
D
F
S
A
T
W
C
G
P
C
K
-
M
-----------
I
-----
K
-
P
F
F
H
S
L
S
E
-
K
Y
S
-
N
------------
V
I
F
----
L
E
--------
V
-----
D
V
D
D
C
-
Q
D
V
A
S
E
C
E
V
K
S
-
M
P
-------
T
F
Q
F
F
K
KGQKV
G
E
F
S
G
AN
K
E
K
L
E
A
T
I
N
E
L
V---------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
42.41
27%
-40
- C3 -
1HX2
-
?
A:
[1-60]
---------------------------------------------------------------
N
F
V
C
--
P
--
P
G
Q
--
T
F
Q
T
-
C
A
S
S
C
P
K
T
C
E
T
-
R
N
-----
K
L
V
L
C
D
K
-
K
-
C
-----------
N
-----
Q
-
R
C
G
C
I
S
G
T
-
V
-
L
-
K
------------
S
K
-----
D
------------------------
S
S
E
C
V
H
-
P
--
S
-------
K
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AATCDPMALS
P
C
A
T
AMFSPSKPKP
S
A
D
C
C
N
K
L
K
L
Q
A
K
C
M
C
KYATDPKFK
G
Y
IQSP
D
A
K
R
V
A
D
SCHVPFPKC
39
98.09
100%
-103
- C- -
M039
-
A:
[1-116]
A
A
T
C
D
P
M
A
L
S
P
C
A
T
A
M
F
S
P
S
K
P
K
P
S
A
D
C
C
N
K
L
K
L
Q
A
K
C
M
C
K
Y
A
T
D
P
K
F
K
G
Y
I
Q
S
P
D
A
K
R
V
A
D
S
C
H
V
P
F
P
K
C
40
96.84
100%
-95
- C- -
M040
-
A:
[1-116]
A
A
T
C
D
P
M
A
L
S
P
C
A
T
A
M
F
S
P
S
K
P
K
P
S
A
D
C
C
N
K
L
K
L
Q
A
K
C
M
C
K
Y
A
T
D
P
K
F
K
G
Y
I
Q
S
P
D
A
K
R
V
A
D
S
C
H
V
P
F
P
K
C
41
92.35
100%
-96
- C- -
M041
-
A:
[1-77]
A
A
T
C
D
P
M
A
L
S
P
C
A
T
A
M
F
S
P
S
K
P
K
P
S
A
D
C
C
N
K
L
K
L
Q
A
K
C
M
C
K
Y
A
T
D
P
K
F
K
G
Y
I
Q
S
P
D
A
K
R
V
A
D
S
C
H
V
P
F
P
K
C