@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 532_tII_MAIZE: (2014-05-10 )
DFSALAPCDVTQLTPCASAFAGKASPTAACCAKLLSHGPGCLCRYKDDASLKRLVDARHKRRVFTACKVPVPSC
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......-.--.--10--...-----...-----..20-..--..--.-.---...30...----..-----------.------------.-----------------------.40.......--.-50..-------.--------..--...60......--------...70.-------.---.-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DFSALAP-C--D--VT--QLT-----
P
C
A
-----
S
A
F--AG--KA--S-
P
---
T
A
A
C
C
A
K
L
----
L
S-----------H------------G-----------------------P
G
C
L
C
R
YKD
D
--
A
-
S
L
K
R
-------
L
--------
V
D
--
A
R
H
K-R
R
V
F
T
A
--------CKVPVP-------S---C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
89.31
28%
-111
- C2 -
2RKN
2
DIRL1_ARATH
A:
[4-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
C
--
G
MS
Q
D
--
E
L
N
-----
E
C
K
-----
P
A
V
--
S
K
--
E
N
PT
S
-
P
---
S
Q
P
C
C
T
A
L
----
Q
H
-----------
A
------------
D
-----------------------
F
A
C
L
C
G
Y
K
N
S
--
P
-
W
L
G
S
-------
F
G-------
V
D
--
P
E
L
A
-
S
A
L
P
K
Q
--------
C
G
L
A
N
A
P------
T
---
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
88.13
34%
-122
- C2 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
C
--
Q
--
A
S
--
Q
L
A
-----
V
C
A
-----
S
A
I
--
L
S
--
G
A
--
K
-
P
---
S
G
E
C
C
G
N
L
----
R
A
-----------
Q
------------
Q
-----------------------
G
-
C
F
C
Q
Y
A
K
D
--
P
-
T
Y
G
Q
-------
Y
--------
I
R
--
S
P
H
A
-
R
D
T
L
T
S
--------
C
G
L
A
V
P
-------
H
---
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
87.35
28%
-106
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
D
L
-
C
GM
S
--
Q
D
--
E
L
N
-----
E
C
K
-----
P
A
V
--
S
K
EN
P
T
--
S
-
P
---
S
Q
P
C
C
T
A
L
----
Q
H
-----------
A
------------
D
-----------------------
F
A
C
L
C
G
Y
K
N
S
--
P
-
W
L
G
S
-------
F
G-------
V
D
--
P
E
L
A
-
S
A
L
P
K
Q
--------
C
G
L
A
N
A
P------
T
---
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
84.67
38%
-94
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
-
C
--
N
--
A
G
--
Q
L
T
-----
V
C
T
-----
G
A
I
--
A
G
--
G
A
--
R
-
P
---
T
A
A
C
C
S
S
L
----
R
A
-----------
Q
------------
Q
-----------------------
G
-
C
F
C
Q
F
A
K
D
--
P
-
R
Y
G
R
-------
Y
--------
V
N
--
S
P
N
A
-
R
K
A
V
S
S
--------
C
G
I
A
L
P
-------
T
---
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
84.07
38%
-94
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
-
C
--
N
--
A
G
--
Q
L
T
-----
V
C
T
-----
G
A
I
--
A
G
--
G
A
--
R
-
P
---
T
A
A
C
C
S
S
L
----
R
A
-----------
Q
------------
Q
-----------------------
G
-
C
F
C
Q
F
A
K
D
--
P
-
R
Y
G
R
-------
Y
--------
V
N
--
S
P
N
A
-
R
K
A
V
S
S
--------
C
G
I
A
L
P
-------
T
---
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
SP3
82.39
36%
-94
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
-
C
--
N
--
A
G
--
Q
L
T
-----
V
C
T
-----
G
A
I
--
A
G
--
G
A
--
R
-
P
---
T
A
A
C
C
S
S
L
----
R
A
-----------
Q
------------------------------------
Q
G
C
F
C
Q
F
A
K
D
--
P
-
R
Y
G
R
-------
Y
--------
V
N
--
S
P
N
A
-
R
K
A
V
S
S
--------
C
G
I
A
L
P
-------
T
---
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
73.27
24%
-88
* C2 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
-
C
--
G
Q
V
A
S
--
A
I
A
-----
P
C
I
-----
S
Y
A
--
R
G
--
Q
G
--
S
G
P
---
S
A
G
C
C
S
G
V
----
R
S
-----------
L
------------
N
N
A
ART
T
A
D
R
R
A
A
-----------
C
N
C
L
K
N
A
A
A
G
V-
S
-
G
-------------------
L
N
--
A
G
N
A
-
A
S
I
P
S
K
--------
C
G
V
S
I
P
YTISTST
D
---
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
70.18
29%
-94
- C2 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
-
C
--
G
--
Q
V
A
S
A
I
A
-----
P
C
I
-----
S
Y
A
--
R
G
--
Q
G
--
S
G
P
---
S
A
G
C
C
S
G
V
----
R
S
L
N
N
A
A
RT
T
A
D
R
R
------------
A
-----------------------
A
-
C
N
C
--
L
K
N
--
A
-
A
-
A
G
-------
V
SG------
L
N
--
A
G
N
A
-
A
S
I
P
S
K
--------
C
G
V
S
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
68.70
24%
-95
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
-
C
--
G
--
Q
V
S
S
S
L
A
-----
P
C
I
-----
P
Y
V
--
R
G
--
G
G
--
A
-
V
---
P
P
A
C
C
N
G
I
----
R
N
V
N
N
L
A
RT
T
P
D
R
Q
------------
A
------------------------
A
C
N
C
--
L
K
Q
--
L
-
S
-
A
S
-------
V
PG------
V
N
--
P
N
N
A
-
A
A
L
P
G
K
--------
C
G
V
S
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
66.95
18%
-84
- C2 -
1HYP
-
?
?:
[6-80]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
-
C
--
P
------
D
L
S
-----
I
C
L
-----
N
I
L
--
G
G
--
S
L
--
G
-
T
---
V
D
D
C
C
A
L
I
G
G
LG
D
I
-----------
E
------------
A
-----------------------
I
V
C
L
C
I
Q
L
R
A
--
L
-
G
I
------------------
L
N
--
L
N
R
N
-
L
Q
L
I
L
N
S
-------
C
G
R
S
Y
P
-------
S
NAT
C
PRT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
64.64
21%
-77
- C2 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
-
C
--
G
--
Q
V
T
S
N
L
A
-----
P
C
L
-----
A
Y
L
--
R
N
--
T
G
----
P
---
L
G
R
C
C
G
G
V
----
K
A
L
V
N
S
A
RT
T
E
D
R
Q
------------
I
-----------------------
A
-
C
T
C
--
L
K
S
--
A
-
A
-
G
A
-------
I
SG------
I
N
--
L
G
K
A
-
A
G
L
P
S
T
--------
C
G
V
N
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
64.58
23%
-97
- C2 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
-
C
--
P
------
D
L
S
-----
I
C
L
-----
N
I
L
GG
S
L
--
G
T
--------
V
D
D
C
C
A
L
I
----
G
G
-----------
L
------------
G
D
I
E
A
-------------------
I
V
C
L
C
I
Q
L
R
A
-----
L
G
I
----------------
L
N
--
L
N
R
N
L
Q
L
I
L
N
S
--------
C
G
R
S
Y
P
-------
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
60.42
21%
-69
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
--
L
V
R
-----
P
C
L
-----
S
Y
V
--
Q
G
--
G
P
--
G
-
P
---
S
G
Q
C
C
D
G
V
----
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
------------
S
-----------------------
A
-
C
N
C
L
K
G
I
A
--
R
-
G
I
H
--------
N
--------
L
N
--
E
D
N
A
-
R
S
I
P
P
K
--------
C
G
V
N
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
59.92
15%
-80
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
--
N
L
A
-----
Q
C
I
-----
G
F
L
--
Q
K
--
G
G
--
V
-
V
---
P
P
S
C
C
T
G
V
----
K
N
I
L
NSSRTTADR
R
------------
A
-----------------------
V
-
C
S
C
L
K
A
A
A
--
G
-
A
V
R
--------
G
--------
I
N
--
P
N
N
A
-
E
A
L
P
G
K
--------
C
G
V
N
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
52.44
13%
-65
- C2 -
1U78
-
TC3A_CAEEL
A:
[2-104]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
R
G
S
A
-
L
--
S
--
D
T
--
E
R
A
-----
Q
-
L
-----
D
V
M
--
K
L
--
L
N
--
V
-
S
---
L
H
E
M
S
R
K
I
----
S
------------
R
------------
S
-----------------------
R
H
C
I
R
V
Y
L
K
D
--
P
V
S
Y
G
T
-------
S
KRAPRRKA
L
S
--
V
R
D
E
-
R
N
V
I
R
A
--------
A
S
N
S
C
K
-------
T
---
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
49.57
16%
-54
- C2 -
1Y1X
-
?
A:
[10-191]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------PTSTGVYAPSARHMNDNQE
L
M
E
W
F
R
A
V
D
T
D
G
S
G
A
-
I
--
S
--
V
P
--
E
L
N
-----
A
A
L
-----
S
S
----
A
--
G
V
--
P
-
F
---
S
L
A
T
T
E
K
L
----
L
H
-----------
M
Y
DKNHSGEIT
F
D
E
-----------------------
F
K
D
L
H
H
F
I
L
S
M
R
E
-
G
F
R
K
R
DSSGDG
R
--------
L
D
--
S
N
E
V
-
R
A
A
L
L
S
--------
S
G
Y
Q
V
S
-------
E
---
Q
T
F
Q
A
L
M
R
K
F
DRQRRGSLG
F
D
D
Y
V
E
L
S
I
F
V
C
R
V
R
N
V
F
A
F
Y
DRERTG
Q
V
T
F
T
F
D
T
F
I
G
G
S
V
S
I
L-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
48.56
16%
-63
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
A
E
M
L
N
H
-
C
--
G
--
M
Y
--
L
M
K
-----
N
L
G
ERSQV
S
P
R
--
M
R
--
E
E
--
D
-
H
---
K
Q
L
C
C
M
Q
L
----
K
N
-----------
L
------------
D
-----------------------
E
K
C
M
C
P
A
I
M
M
--
M
--
L
N
E
-------
P
--------
M
W
--
I
R
M
R
-
D
Q
V
M
S
M
--------
A
H
N
L
P
I
-------
E
---
C
NLMSQPCQM----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
44.86
10%
-95
- C2 -
1DV1
-
ACCC_ECOLI
A:
[2-446]
---------------------------------------------------------------------------------------------------------------------------------------------------LDKIVIANRG
E
I
A
L
R
I
L
R
A
C
K
E
L
G
I
K
T
V
A
V
H
S
SADRDL
K
H
V
L
L
AD
E
T
V
C
IGP
A
P
S
V
K
S
Y
-
L
--
N
--
I
P
--
A
I
I
S
A
A
E
I
T
G
A
-----
V
A
I
--
H
P
--
G
Y
--
G
-
F
LSE
N
A
N
F
A
E
Q
V
----
E
R
-----------
S
------------
G
-----------------------
F
I
F
I
G
P
K
A
E
-----
T
I
R
L
-------
M
--------
G
D
--
K
V
S
A
-
I
A
A
M
K
K
--------
A
G
V
P
C
V
-------
P
---
G
SDGPLGDD
M
D
K
N
R
A
I
A
K
R
I
GYP
V
I
I
K
A
SMRVVRGDAE
L
A
Q
S
I
S
M
T
R
A
E
AND
M
V
Y
M
E
K
Y
L
E
N
P
R
H
V
E
I
Q
V
L
A
DGQG
N
A
I
Y
L
A
E
R
D
CSMQRRHQKV
V
E
E
A
PAPGIT
P
E
L
R
R
Y
I
G
E
R
C
A
K
A
C
V
D
I
GYR
G
A
G
T
F
E
F
L
F
E
NG
E
F
Y
F
IEMNTRIQVE
H
P
V
T
E
M
I
T
GVD
L
I
K
E
Q
L
R
I
A
A
GQPLSIKQEE
V
H
V
R
G
H
A
V
E
C
R
I
N
AEDPNTF
L
P
S
P
G
K
I
T
R
F
H
A
P
G
G
FG
V
R
W
E
S
HIYAG
Y
T
V
P
PYYDSMI
G
K
L
I
C
Y
G
EN
R
D
V
A
I
A
R
M
K
N
A
L
Q
E
L
I
I
D
GIKTN
V
D
L
Q
I
R
I
M
N
D
E
N
F
Q
H
GGTNIH
Y
L
E
K
K
L
GL
32
SP3
40.70
12%
-58
- C2 -
2EBN
-
?
?:
[5-289]
TTKAN
I
K
L
F
S
F
T
EVNDTNPLNNLNFTLKNSGKPLVDMVVLF
S
A
N
I
N
Y
DAAND
K
V
F
V
S
N
N
P
N
V
Q
H
L
L
T
N
RAKYL
K
P
L
Q
D
K
G
I
K
V
I
L
S
I
L
G
N
HDRSGIANLS
T
A
R
A
K
A
F
A
Q
E
L
K
N
T
C
D
L
Y
NLD
G
V
F
F
D
DEYSAYQTPPPSGFVTPS
N
N
A
A
A
R
L
A
Y
E
T
K
Q
A
MPN
K
L
V
T
V
Y
VYSRTSSFPTAVDGVNAGSYVD
Y
A
I
H
D
YGGSY
D
L
A
T
N
Y
P
G
L
--
A
--
K
S
--
G
M
V
-----
M
S
S
-----
Q
E
F
--
N
Q
--
G
R
--
Y
-
A
---
T
A
Q
A
L
R
N
I
----
V
T
-----------
K
------------
G
-----------------------
Y
G
G
H
M
I
F
A
M
D
--
P
-
N
R
S
N
-------
F
--------
T
S
G
Q
L
P
A
L
-
K
L
I
A
K
E
LYG
D
E
L
V
Y
S
N
T
P
Y
S
-------
K
---
D
W------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
37.59
10%
-56
- C2 -
1HQV
-
PDCD6_MOUSE
A:
[8-188]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
G
P
G
G
G
PGPAALPD
Q
S
F
L
W
N
V
F
Q
R
V
D
K
D
R
S
G
V
-
I
--
S
--
D
N
--
E
L
Q
-----
Q
A
L
-----
S
N
---
G
T
--
W
T
--
P
-
F
---
N
P
V
T
V
R
S
I
----
I
S
-----------
M
------------
F
DRENKAGVN
F
S
E
F
T
G
V
W
K
Y
I
T
D
W
Q
N
V
F
R
T
Y
D
R
D
--
N
-
S
--
G
-------
M
--------
I
D
--
K
N
E
L
-
K
Q
A
L
S
G
--------
F
G
Y
R
L
S
-------
D
---
Q
F
H
D
I
L
I
R
K
FDRQGRGQIA
F
D
D
F
I
Q
G
C
I
V
L
Q
R
L
T
D
I
F
R
R
Y
DTDQDG
W
I
Q
V
S
Y
E
Q
Y
L
S
M
V
F--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70...
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
DFSALAPCDVTQLT
P
C
A
S
A
FAGKAS
P
T
A
A
C
C
A
K
L
L
SHGP
G
C
L
C
R
YKD
D
A
S
L
K
R
L
V
D
A
R
H
KR
R
V
F
T
A
CKVPVPSC
39
100.00
100%
-123
- C- -
M039
-
A:
[1-161]
D
F
S
A
L
A
P
C
D
V
T
Q
L
T
P
C
A
S
A
F
A
G
K
A
S
P
T
A
A
C
C
A
K
L
L
S
H
G
P
G
C
L
C
R
Y
K
D
D
A
S
L
K
R
L
V
D
A
R
H
K
R
R
V
F
T
A
C
K
V
P
V
P
S
C
40
96.74
100%
-116
- C- -
M040
-
A:
[1-161]
D
F
S
A
L
A
P
C
D
V
T
Q
L
T
P
C
A
S
A
F
A
G
K
A
S
P
T
A
A
C
C
A
K
L
L
S
H
G
P
G
C
L
C
R
Y
K
D
D
A
S
L
K
R
L
V
D
A
R
H
K
R
R
V
F
T
A
C
K
V
P
V
P
S
C
34
60.42
100%
-26
- C- -
M034
-
A:
[4-98]
D
F
S
A
L
A
P
C
D
V
T
Q
L
T
P
C
A
S
A
F
A
G
K
A
S
P
T
A
A
C
C
A
K
L
L
S
H
G
P
G
C
L
C
R
Y
K
D
D
A
S
L
K
R
L
V
D
A
R
H
K
R
R
V
F
T
A
C
K
V
P
V
P
S
C
33
56.38
100%
-30
- C- -
M033
-
A:
[4-98]
D
F
S
A
L
A
P
C
D
V
T
Q
L
T
P
C
A
S
A
F
A
G
K
A
S
P
T
A
A
C
C
A
K
L
L
S
H
G
P
G
C
L
C
R
Y
K
D
D
A
S
L
K
R
L
V
D
A
R
H
K
R
R
V
F
T
A
C
K
V
P
V
P
S
C