@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 599_tII_ARATH: (2014-05-11 )
IGAGGSRSKRDRESCEESRIQTCLDVVNSGLKISTECCKFLKEQQPCLCDVTKTSKIKTNVLSSRLKSCGIHNLKCGNNNNAMRTSNPPNQ
Atome Classification :
(20 SA)
-----------------....-------------.------..----------------..10....---------.--..--.------20......--.---.------------30-.--.-..----.....40..-----------.-----.-.-------------...50--....-.....60-.----------------..-..-----.-----------------.----..-----70...---------..--...--80----.-------...---.---.-----------..---.90-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------IGAG-------------G------SR----------------SK
R
D
R
E
S
C
---------
E
--
E
S
--
R
------
I
Q
T
C
L
D
V
V
--N---S------------G--
L
--
K
-I
S
----
T
E
C
C
K
F
L
K
E-----------Q-----Q-P-------------
C
L
CD---VTKT-S
K
I
K
T
N
--
V
----------------
L
S
-
S
R
-----
L
-----------------
K
----SC-----GI
H
N
L---------KC--GNN--N-----N-------AMR---T---S-----------NP---PNQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
81.42
33%
-117
- C4 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-----------------------------------------------------------------
A
C
---------
Q
--
A
S
--
Q
------
L
A
V
C
A
S
A
I
--
L
---
S
------------
G
--
A
--
K
-
P
S
----
G
E
C
C
G
N
L
R
A
-----------
Q
-----
Q
-
G
-------------
C
F
C
Q
---
Y
A
K
D
-
P
T
Y
G
Q
Y
--
I
----------------
R
S
-
P
H
-----
A
R
D
T
L
-------------
T
----
S
C
-----
G
L
A
V
P
---------
H
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
80.91
27%
-85
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
---------
N
--
A
G
--
Q
------
L
T
V
C
T
G
A
I
--
A
---
G
------------
G
--
A
--
R
-
P
T
----
A
A
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
-------------
C
F
C
Q
---
F
A
K
D
-
P
R
Y
G
R
Y
--
V
----------------
N
S
-
P
N
-----
A
-----------------
R
KAVS
S
C
-----
G
I
A
L
P
---------
T
C
--
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
79.46
28%
-77
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
---------
N
--
A
G
--
Q
------
L
T
V
C
T
G
A
I
--
A
---
G
------------
G
--
A
--
R
-
P
T
----
A
A
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
-------------
C
F
C
Q
---
F
A
K
D
-
P
R
Y
G
R
Y
--
V
----------------
N
S
-
P
N
-----
A
RKAV-------------
S
----
S
C
-----
G
I
A
L
P
---------
T
C
--
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
76.38
25%
-98
- C4 -
2RKN
2
DIRL1_ARATH
A:
[4-77]
-----------------------------------------------------------------
L
C
---------
G
MS
Q
D
--
E
------
L
N
E
C
K
P
A
V
--
S
---
K
------------
E
--
N
PT
S
-
P
S
----
Q
P
C
C
T
A
L
Q
H
-----------
A
-----
D
F
A
-------------
C
L
C
G
---
Y
K
N
S
-
P
W
L
G
S
F
G-
V
----------------
D
P
-
E
L
-----
A
S
A
LP-------------
K
----
Q
C
-----
G
L
A
N
A
P--------
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
SP3
75.57
16%
-77
* C4 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------
A
I
S
C
---------
G
Q
V
A
S
--
A
------
I
A
P
C
I
S
Y
A
--
R
---
G
------------
Q
--
G
--
S
G
P
S
----
A
G
C
C
S
G
V
R
S
-----------
L
-----
N
-
N
A
ART
T
A
D
R
R
A
A
C
N
C
L
K
N
---
A
A
A
G
V
S
G
L
N
A
G
--
N
----------------
A
A
-
S
I
-----
P
-----------------
S
----
K
C
-----
G
V
S
I
P
Y--------
T
I
--
S
T
S
--
T
-----
D
-------
C
S
R
---
V
---
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
SP3
71.99
19%
-75
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
---------
N
--
A
G
--
Q
------
L
T
V
C
T
G
A
I
--
A
---
G
------------
G
--
A
--
R
-
P
T
----
A
A
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
-------------
C
F
C
Q
---
F
A
K
D
-
P
R
Y
G
R
Y
--
V
----------------
N
S
-
P
N
ARKA-
V
-----------------
S
----
S
C
-----
G
I
A
L
P
---------
T
C
--
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
67.84
28%
-83
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
-------------------------------------------------------------------------------
D
S
--
L
------
V
R
P
C
L
S
Y
V
--
Q
---
G
------------
G
--
P
--
G
-
P
S
----
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
-------------
C
N
C
L
---
K
G
I
A
-
R
G
I
H
-
N
--
L
----------------
N
E
-
D
N
-----
A
R
S
IP-------------
P
----
K
C
-----
G
V
N
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
65.22
15%
-59
- C4 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
-----------------------------------------------------------------
M
C
---------
Y
--
P
G
--
Q
AFQVPA
L
P
A
C
R
P
L
L
--
R
L
Q
C
N
------------
G
--
S
--
Q
-
V
P
E
A
V
L
R
D
C
C
Q
Q
L
A
H
I----------
S
-----
E
-
W
-------------
C
R
C
G
A
L
Y
S
M
L
D
-
S
M
Y
K
E
H
--
G
----------------
A
F
-
P
R
-----
C
R
R
E
V
V
K
L
T
A
A
S
I
T----
A
----
V
C
-----
R
L
P
I
V
---------
V
D
--
A
S
G
--
D
-----
G
-------
A
Y
V
---
C
K
D
V
A
-----------
A
Y
---
P
D
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
63.98
27%
-105
- C4 -
1HYP
-
HPSE_SOYBN
A:
[6-73]
----------------------------------------------------------------
P
S
C
---------
P
------
D
------
L
S
I
C
L
N
I
L
GG
S
---
L
------------
G
--
T
-----
V
----
D
D
C
C
A
L
I
G
G
-----------
L
G
D
I
E
A
I
-
V
-------------
C
L
C
I
---
Q
L
R
A
---
L
G
I
---
L
----------------
N
L
-
N
R
N
L
Q
L
I
L
-----------------
N
----
S
C
-----
G
R
S
Y
P
---------
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
63.23
18%
-46
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------------------------
A
I
D
L
C
G
M
---------
S
--
Q
D
--
E
------
L
N
E
C
K
P
A
V
--
S
---
K
------------
E
NP
T
--
S
-
P
S
----
Q
P
C
C
T
A
L
Q
H
A----------
D
-----
F
-
A
-------------
C
L
C
G
---
Y
K
N
S
-
P
W
L
G
S
F
--
G
----------------
V
D
--------
P
-----------------
E
----
L
A
-----
S
A
L
P
K
---------
Q
C
--
G
------------------------
L
---
A
-----------
N
A
---
P
T
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
59.65
22%
-64
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
----------------------------------------------------------------
I
T
C
---------
G
--
Q
V
S
S
S
------
L
A
P
C
I
P
Y
V
--
R
---
G
------------
G
--
G
--
A
-
V
P
----
P
A
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
-------------
C
N
C
-----
L
K
Q
-
L
S
-
A
S
V
PG
V
----------------
N
P
-
N
N
-----
A
A
A
LP-------------
G
----
K
C
-----
G
V
S
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
59.44
16%
-75
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
-------------------------------------------------------------------------------
Q
G
--
N
------
L
A
Q
C
I
G
F
L
--
Q
---
K
------------
G
--
G
--
V
-
V
P
----
P
S
C
C
T
G
V
K
N
I
L
NSSRTTADR
R
-----
A
-
V
-------------
C
S
C
L
---
K
A
A
A
-
G
A
V
R
-
G
--
I
----------------
N
P
-
N
N
-----
A
E
A
L
P-------------
G
----
K
C
-----
G
V
N
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
59.08
20%
-67
- C4 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
----------------------------------------------------------------
I
S
C
---------
G
--
Q
V
A
S
A
------
I
A
P
C
I
S
Y
A
--
R
---
G
------------
Q
--
G
--
S
G
P
S
----
A
G
C
C
S
G
V
R
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
-------------
C
N
C
-----
L
K
N
-
A
A
-
A
G
V
SG
L
----------------
N
A
-
G
N
-----
A
A
S
I
P
-------------
S
----
K
C
-----
G
V
S
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
59.02
21%
-72
- C4 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
----------------------------------------------------------------
I
T
C
---------
G
--
Q
V
T
S
N
------
L
A
P
C
L
A
Y
L
--
R
---
N
------------
T
--
G
----
P
L
----
G
R
C
C
G
G
V
K
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
-------------
C
T
C
-----
L
K
S
-
A
A
-
G
A
I
SG
I
----------------
N
L
-
G
K
-----
A
A
G
L
P-------------
S
----
T
C
-----
G
V
N
I
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
56.26
12%
-23
* C1 *
2TPT
-
?
?:
[1-440]
-------LFL
A
Q
E
I
I
R
K
K
R
D
G
-------------
H
------
A
L
----------------
S
D
E
E
I
R
F
F
I
N
G
I
R
D
NTI
S
--
E
G
--
Q
------
I
A
A
L
A
M
T
I
--
F
F
--
H
------------
D
--
M
--
T
-
M
P
E
R
--
V
S
L
T
M
A
M
R
D
-----------
S
-----
G
-
T
-------------
V
L
-----
D
W
K
S
-
L
H
L
N
G
P
--
I
V
D
K
H
S
TGGVGDV
T
S
L
M
L
G
-
P
M
-----
V
-----------------
A
----
A
C
-----
G
G
Y
I
P
MISGRGLGH
T
G
--
G
T
L
--
D
K
L
E
SI
P
-------
G
F
D
---
I
---
F
-----------
P
D
---
D
N
R
F
R
E
I
I
K
D
VG
V
A
I
I
G
Q
T
SSLA
P
A
D
K
R
F
Y
A
T
R
D
I
T
ATVDS
I
P
L
I
T
A
S
I
L
A
K
K
L
A
E
GLD
A
L
V
M
D
V
K
V
G
SGAFMPT
Y
E
L
S
E
A
L
A
E
A
I
V
G
V
A
N
G
A
GVR
T
T
A
L
L
T
D
MNQVLASSAGN
A
V
E
V
R
E
A
V
Q
F
L
T
GEYRN
P
R
L
F
D
V
T
M
A
L
C
V
E
M
L
I
S
G
KLAKD
D
A
E
A
R
A
K
L
Q
A
V
L
D
N
G
K
A
A
E
V
F
G
R
M
V
A
A
Q
KGPTDFVENYAKY
L
P
T
A
M
L
T
K
A
V
Y
A
D
T
E
G
F
VSEMD
T
R
A
L
G
M
A
V
V
A
M
GGGRRQASDTIDYS
V
G
F
T
DMARLG
D
Q
V
D
GQRPLAVIHAKD
E
N
N
W
Q
E
A
A
K
A
V
K
A
A
I
KLADKAPESTPTVY
R
R
I
S
E
25
SP3
45.58
16%
-18
- C3 -
1CIP
1
GNAI1_RAT
A:
[31-346]
----------R
E
V
K
L
L
L
L
G
A
G
-------------
E
------
S
G
K
S
T
I
V
K
Q
M
K
I
I
HEAGY
S
E
E
E
C
K
Q
Y
---------
K
--
A
V
--
V
------
Y
S
N
T
I
Q
S
I
--
I
---
A
I
I
R
A
M
G
R
L
KIDF
G
--
D
--
A
-
A
R
----
A
D
D
A
R
Q
L
F
V
-----------
L
-----
A
-
G
-------------
A
A
E
E
---
G
F
M
T
-
A
E
L
A
G
V
--
I
K
R
L
W
------------
K
D
-
S
G
-----
V
-----------------
Q
----
A
C
F
N
R
SR
E
Y
Q
L
N
---------
D
S
--
A
A
Y
Y
L
N
-----
D
-------
L
D
R
---
I
---
A
-----------
Q
P
N
Y
I
P
T
Q
Q
D
V
L
R
T
R
V
K
T
T
G
I
V
E
T
H
F
T
F
KD
L
H
F
K
M
F
D
V
G
GQRSERKKWIHCFEGVT
A
I
I
F
C
V
ALSDYDLVLAEDEEMN
R
M
H
E
S
M
K
L
F
D
S
I
C
N
NKWFTD
T
S
I
I
L
F
LNK
K
D
L
F
E
E
K
I
K
KSPLTICYPEYAGSNT
Y
E
E
A
A
A
Y
I
Q
C
Q
F
E
D
L
NKRKDT
K
E
I
Y
T
H
F
T
CATD
T
K
N
V
Q
F
V
F
D
A
V
T
D
V
I
I
K
N
N---------------------------------------------------------------------------------------------------------------------------
24
SP3
40.63
15%
-1
* C3 *
1F0Y
2
HCDH_HUMAN
A:
[12-203]
--------K
I
I
V
K
H
V
T
V
I
G
G
G
L
M
G
A
G
I
A
Q
V
A
A
A
T
G
H
T
V
V
L
V
D
Q
----------------
T
E
D
I
L
A
K
S
---------
K
--
K
G
--
I
------
E
E
S
L
R
K
V
A
--
K
---
K
------------
K
--
F
--
A
-
E
N
----
P
K
A
G
D
E
F
V
E
-----------
K
-----
T
-
L
-------------
S
T
I
A
---
T
S
T
D
---
A
A
S
V
--
V
----------------
H
S
-
T
D
-----
L
V
V
E
A
I
V
EN
L
K
V
K
N
E
L
F
K
R
----
L
D
-----
K
F
A
A
E
---------
H
T
I
F
A
S
N
--
T
-----
S
SLQ
I
T
S
I
A
N
A
---
T
---
T
RQDR
F
A
G
L
H
F
F
N
P
---
V
P
V
MK
L
V
E
V
I
K
T
PMTS
Q
K
T
F
E
S
L
V
D
F
S
K
A
L
G
K
H
P
V
S
C
K
DTP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
38.33
9%
-10
- C1 -
1HE1
2
?
A:
[1-135]
A
S
S
A
V
V
F
K
Q
M
V
L
Q
Q
A
L
P
M
T
L
K
-------------
G
------
L
D
----------------
K
A
S
E
L
A
T
L
---------
T
--
P
E
--
G
------
L
A
R
E
H
S
R
L
--
A
---
S
------------
G
--
D
--
G
-
A
L
----
R
S
L
S
T
A
L
A
G
----------------------------------
I
R
A
---
G
S
Q
V
-
E
E
S
R
I
Q
--
A
----------------
G
R
L
L
E
-----
R
-----------------
S
----
I
G
-----
G
I
A
L
Q
---------
Q
W
--
G
T
T
--
G
-----
G
-------
A
A
S
Q
L
V
L
---
D
-----------
A
S
---
P
E
L
R
R
E
I
T
D
Q
L
H
Q
V
M
S
E
V
A
L
L
R
Q
A
V
E
S
E
V
S--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
37.81
11%
6
* C2 *
2GD7
-
HEXI1_HUMAN
A:
[1-107]
-GAMAGDGSEFLQRDFS
E
T
Y
E
-------------
R
------
Y
H
----------------
T
E
S
L
Q
N
M
S
---------
K
--
Q
E
--
L
------
I
K
E
Y
L
E
L
E
--
K
---
C
------------
L
--
S
--
R
-
M
E
----
D
E
N
N
R
L
R
L
E
-----------
S
-----
K
-
R
---------------------
L
G
G
-
D
D
A
R
V
R
--
E
----------------
L
E
-
L
E
-----
L
-----------------
D
----
R
L
-----
R
A
E
N
L
---------
Q
L
--
L
T
E
--
N
-----
E
-------
L
H
R
---
Q
---
Q
-----------
E
R
---
A
P
L
SKFGD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
28.22
32%
9
- C2 -
1G39
-
HNF1A_MOUSE
A:
[1-28]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
---
V
S
K
L
-
S
Q
L
Q
T
E
--
L
----------------
L
A
-
A
L
-----
L
-----------------
E
----
S
------------------------
G
L
S
--
K
-----
E
-------
A
L
I
---
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
IGAGGSRSK
R
D
R
E
S
C
E
E
S
R
I
Q
T
C
L
D
V
V
NSG
L
K
I
S
T
E
C
C
K
F
L
K
EQQP
C
L
CDVTKTS
K
I
K
T
N
V
L
S
S
R
L
K
SCGI
H
N
LKCGNNNNAMRTSNPPNQ
32
92.72
100%
-129
- C- -
M032
-
A:
[13-100]
------------
E
S
C
E
E
S
R
I
Q
T
C
L
D
V
V
N
S
G
L
K
I
S
T
E
C
C
K
F
L
K
E
Q
Q
P
C
L
C
D
V
T
K
T
S
K
I
K
T
N
V
L
S
S
R
L
K
S
C
G
I
H
N
L
K
C
G
--------------
37
86.40
100%
-116
- C- -
M037
-
A:
[12-117]
-----------
R
E
S
C
E
E
S
R
I
Q
T
C
L
D
V
V
N
S
G
L
K
I
S
T
E
C
C
K
F
L
K
E
Q
Q
P
C
L
C
D
V
T
K
T
S
K
I
K
T
N
V
L
S
S
R
L
K
S
C
G
I
H
N
L
K
C
G
N
N
N
N
A
M
R
T
S
N
P
P
N
Q
36
83.27
100%
-99
- C- -
M036
-
A:
[12-117]
-----------
R
E
S
C
E
E
S
R
I
Q
T
C
L
D
V
V
N
S
G
L
K
I
S
T
E
C
C
K
F
L
K
E
Q
Q
P
C
L
C
D
V
T
K
T
S
K
I
K
T
N
V
L
S
S
R
L
K
S
C
G
I
H
N
L
K
C
G
N
N
N
N
A
M
R
T
S
N
P
P
N
Q