@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 609_tVI_THECC: (2014-05-11 )
DMSPSQCKEEQRLLVNACRAVIFGRSPSPSCCERVRVTHVECVCPVITPQLAALIGVERTIKQIEGCGRTVPHNFKCGSITTP
Atome Classification :
(20 SA)
---------------------------------------------------------..------.....---------..10.--.--....----..20..--------------.-----.-------.---------.----------.-------.--30.....--------...----------40---------.----------...---------....-.50..-.--.--.-------------..--.-.60...--...-..--------.70.----.--------------------...------.---..80.-.--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------DM------
S
P
S
Q
C
---------
K
E
E
Q
R
--
L
--
L
V
N
A
----
C
R
A
V
IF--------------G-----R-------S---------P----------
S
-------
P
--
S
C
C
E
R
V
R--------
V
T
H
----------
V
----------
E
----------
C
VC---------PVI
T
-
P
Q
-
L
A
-
A
--
L
--
I
-------------
G
V
--
E
-
R
T
-
I
K
Q
--
I
E
G-CG--------RTVP----H--------------------NFK------C---GSITT-P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
77.62
22%
-113
- C4 -
1T12
-
NLTP1_TOBAC
A:
[3-90]
--------------------------------------------------------------------
T
C
---------
G
Q
V
T
S
--
N
--
L
-
A
P
----
C
L
A
Y
L
R
--------------
N
-----
T
-------
G
---------
P
----------
L
-------
G
--
R
C
C
G
G
V
K
--------
A
L
V
----------
N
S
A
RT
T
E
D
R
Q
I
A
----------
C
T
C
-----------
L
K
-
S
A
-
A
G
-
A
--
I
SG
I
-------------
N
L
--
G
-
K
A
-
A
G
L
--
P
S
T
-
C
G
--------
V
N
I
P
YKIS
P
--------------------
S
T
D
------
C
---
S
K
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
75.01
24%
-101
- C4 -
1AFH
-
NLTP_MAIZE
A:
[3-92]
--------------------------------------------------------------------
S
C
---------
G
Q
V
A
S
--
A
--
I
-
A
P
----
C
I
S
Y
A
R
--------------
G
-----
Q
G------
S
G--------
P
----------
S
-------
A
--
G
C
C
S
G
V
R
--------
S
L
N
----------
N
A
A
RT
T
A
D
R
R
A
A
----------
C
N
C
-----------
L
K
-
N
A
-
A
A
-
G
VS
G
--
L
-------------
N
A
--
G
-
N
A
-
A
S
I
--
P
S
K
-
C
G
--------
V
S
I
P
Y
T
I
S
T
--------------------
S
T
D
------
C
---
S
R
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
72.81
25%
-95
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------
I
D
C
---------
G
H
V
D
S
--
L
--
V
-
R
P
----
C
L
S
Y
V
Q
--------------
G
GP-----------
G
---------
P
----------
S
-------
G
--
Q
C
C
D
G
V
K
--------
N
L
H
----------
N
----------
Q
ARS
Q
S
D
R
Q
S
A
C
N
C
---------
L
K
G
I
-
A
R
-
G
I
-
H
--
N
--
L
-------------
N
---
E
-
D
N
-
A
R
S
--
I
P
P
K
C
G
----------
V
N
----
L
--------------------
P
Y
T
I
S
LNID
C
---
S
R
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
72.59
23%
-70
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[2-89]
--------------------------------------------------------------------
D
C
---------
G
H
V
D
S
--
L
--
V
-
R
P
----
C
L
S
Y
V
Q
--------------
G
G----
P
-------
G
---------
P
----------
S
-------
G
--
Q
C
C
D
G
V
K
--------
N
L
H
----------
N
Q
ARS
Q
S
D
R
Q
S
A
----------
C
N
C
---------
L
K
G
I
-
A
R
-
G
I
-
H
--
N
--
L
-------------
N
E
--
D
-
N
A
-
R
S
I
--
P
P
K
-
C
G
--------
V
N
L
P
Y
T
I
S
L
--------------------
N
I
D
------
C
---
S
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
72.38
20%
-91
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------P
Y
G
R
G
R
------
T
E
S
G
C
---------
Y
Q
Q
M
E
--
E
A
E
M
L
N
H
----
C
G
M
Y
L
M
KNLGERSQVSPR
M
R
E
-----
E
-------
D
---------
H
----------
K
-------
Q
--
L
C
C
M
Q
L
K
--------
N
L
D
----------
E
----------
K
----------
C
M
C
---------
P
A
I
M
-
M
M
-
L
N
-
E
--
P
--
M
--------------
W
--
I
-
R
M
-
R
D
Q
--
V
M
S
-
M
A
--------
H
N
L
P
----
I
--------------------
E
--------
C
---
N
L
M
S
Q
-
P
CQM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
SP3
71.52
19%
-93
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------
A
I
------
S
---
C
---------
G
Q
V
A
S
--
A
--
I
-
A
P
----
C
I
S
Y
A
R
--------------
G
QG---
S
-------
G
---------
P
----------
S
-------
A
--
G
C
C
S
G
V
R
S
L
N
N
A
ART
T
A
D
----------
R
----------
R
----------
A
A
C
---------
N
C
L
K
-
N
A
-
A
A
-
G
--
V
SG
L
-------------
N
A
--
G
-
N
A
-
A
S
I
--
P
S
K
-
C
G
VSIP----
Y
T
I
S
----
T
--------------------
S
T
D
------
C
---
S
R
V
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
71.37
22%
-101
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------
A
I
D
L
C
---------
G
M
-
S
Q
--
D
--
E
L
N
E
----
C
K
P
A
V
S
--------------
K
ENP--
T
-------
S
---------
P
----------
S
-------
Q
--
P
C
C
T
A
L
Q
--------
H
A
D
----------
F
----------
A
----------
C
L
C
---------
G
Y
K
N
-
S
P
-
W
L
-
G
--
S
--
F
-------------
G
V
D
P
E
-
L
A
-
S
A
L
--
P
K
Q
-
C
G
--------
L
A
N
A
----
P
--------------------
T
--------
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
70.69
21%
-96
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[3-91]
--------------------------------------------------------------------
T
C
---------
G
Q
V
S
S
--
S
--
L
-
A
P
----
C
I
P
Y
V
R
--------------
G
G----
G
-------
A
---------
V
----------
P
-------
P
--
A
C
C
N
G
I
R
--------
N
V
N
N
L
A
RT
T
P
D
R
Q
A
----------
A
----------
C
N
C
-----------
L
K
-
Q
L
-
S
A
-
S
VP
G
--
V
-------------
N
P
--
N
-
N
A
-
A
A
L
--
P
G
K
-
C
G
--------
V
S
I
P
YKIS
A
--------------------
S
T
N
------
C
---
A
T
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
69.58
25%
-77
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[3-90]
---------------------------------------------------------------------
C
---------
G
Q
V
Q
G
--
N
--
L
-
A
Q
----
C
I
G
F
L
Q
--------------
K
G----
G
-------
V
---------
V
----------
P
-------
P
--
S
C
C
T
G
V
K
--------
N
I
L
----------
N
SSRTTADR
R
A
V
----------
C
S
C
---------
L
K
A
A
-
A
G
-
A
V
-
R
--
G
--
I
-------------
N
P
--
N
-
N
A
-
E
A
L
--
P
G
K
-
C
G
--------
V
N
I
P
YKIS
T
--------------------
S
T
N
------
C
---
N
S
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
SP3
68.33
14%
-86
- C4 -
1S3I
5
AL1L1_RAT
A:
[1-307]
----------------------------------------------------------
M
K
I
A
V
I
G
Q
S
L
F
G
---------
Q
E
V
Y
C
--
Q
--
L
R
K
E
GHEV
V
G
V
F
T
I
--------------
P
-----
D
-------
K
---------
D
----------
G
-------
K
AD
P
D
G
L
E
A
E
--------
K
D
G
----------
V
----------
P
----------
V
F
K
F
PRWRAR--
G
Q
A
L
-
P
E
-
V
V
-
A
--
K
--
Y
-------------
Q
A
--
L
-
G
A
E
L
N
V
--
L
P
F
-
C
S
--------
Q
F
I
P
M
E
V
I
N
--------------------
A
P
R
------
H
---
G
S
I
I
Y
H
P
SLLPRHRGAS
A
I
N
W
T
L
I
H
GDK
K
G
G
F
T
I
F
W
A
D
DGLDTGDLL
L
Q
K
E
C
E
V
L
PDDT
V
S
T
L
Y
N
R
FLF
P
E
G
I
K
G
M
V
Q
A
V
R
L
I
A
E
GT
A
P
R
C
P
Q
S
EEG
A
T
Y
E
G
I
QKKETAKINWDQP
A
E
A
I
H
N
W
I
R
G
N
DKVP
G
A
W
T
E
A
CG
Q
K
L
T
F
F
NSTLNTSGLSTQ
G
E
A
L
P
I
P
GAHRPGVVTKA
G
L
I
L
F
G
NDD
R
M
L
L
V
K
N
I
Q
L
EDGKMMPASQFFK
21
HHSearch
68.08
23%
-102
- C4 -
2RKN
2
DIRL1_ARATH
A:
[2-75]
------------------------------------------------------------------
I
D
L
C
---------
G
M
S
Q
D
--
E
--
L
-
N
E
----
C
K
P
A
V
S
--------------
K
-----
E
NPT----
S
---------
P
----------
S
-------
Q
--
P
C
C
T
A
L
Q
--------
H
A
D
----------
F
----------
A
----------
C
L
C
---------
G
Y
K
N
-
S
P
W
L
G
S
F
--
G
--
V
-------------
D
P
--
E
-
L
A
-
S
A
L
--
P
K
Q
-
C
G
--------
L
A
N
A
----
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
SP3
66.77
15%
-110
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------P
Y
G
R
G
R
------
T
E
S
G
C
---------
Y
Q
Q
M
E
E
A
E
--
M
L
N
H
----
C
G
M
Y
L
M
--------------
K
-----
N
LGERSQV
S
---------
P
----------
R
M
R
E
E
D
H
K
Q
--
L
C
C
M
Q
L
K
--------
N
L
D
----------
E
----------
K
----------
C
M
C
P
A
I
M
M
M
L
N
E
P
M
W
I
-
R
M
-
R
D
-
Q
--
V
--
M
-------------
S
M
--
A
-
H
---
N
L
--
P
I
E
-
C
N
----------
L
M
----
S
--------------------
Q
-
P
------
C
---
Q
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
66.66
19%
-108
- C4 -
1SM7
-
?
A:
[3-103]
-------------------------------------------------------------------
Q
K
C
---------
Q
R
E
F
Q
--
Q
E
Q
H
L
R
A
----
C
Q
Q
W
I
R
--------------
Q
QLAG-
S
-------
P
F
S
E
NQWG--
P
QQGPS
L
----
R
-------
E
--
Q
C
C
N
E
L
Y
--------
Q
E
D
----------
Q
----------
V
----------
C
V
C
---------
P
T
L
K
-
Q
A
-
A
K
-
S
--
V
--
R
VQGQHGPFQST
R
-
I
Y
--
Q
-
I
A
-
K
N
L
--
P
N
V
-
C
N
--------
M
K
Q
I
----
G
--------------------
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
66.44
21%
-94
- C4 -
1UG7
-
AIDA_MOUSE
A:
[1-128]
--GSSGSSGMSE
V
T
R
S
L
L
Q
R
W
G
A
S
L
R
R
G
A
D
F
D
S
W
GQ
L
V
E
A
I
D
E
Y
Q
I
L
A
R
H
L
Q
K
E
A
Q
A
Q
H
------
N
N
S
E
F
---------
T
E
E
Q
K
--
K
--
T
I
G
K
----
I
A
T
C
L
E
--------------
L
-----
R
-------
S
---------
A
----------
A
-------
L
--
Q
S
T
Q
S
Q
E
----------------------------------------------------------
E
-
F
K
-
L
E
-
D
--
L
--
K
-------------
K
L
--
E
-
P
I
-
L
K
N
--
I
L
T
-
Y
N
--------
K
E
F
P
--------------------------
F
D
------
V
---
Q
P
I
S
G
-
P
SSG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
64.59
27%
-100
- C4 -
1N89
1
NLT2G_WHEAT
A:
[8-65]
-------------------------------------------------------------------------------------------
A
V
----
C
A
S
A
I
L
--------------
S
G----
A
-------
K
---------
P
----------
S
-------
G
--
E
C
C
G
N
L
R
--------
A
Q
Q
---------------------
G
----------
C
F
C
---------
Q
Y
A
K
D
P
T
-
Y
G
-
Q
--
Y
--
I
-------------
R
S
--
P
-
H
A
-
R
D
T
--
L
T
S
-
C
G
--------
L
A
V
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
60.41
15%
-90
- C4 -
2LVF
-
?
A:
[4-101]
-----------------------------------------------------------------
A
Q
E
E
C
---------
R
E
Q
M
Q
R
Q
Q
--
M
L
S
H
----
C
R
M
Y
M
R
--------------
Q
Q
M
E
E
S
T
-------
Y
---------
Q
TMPRRGMEP
H
M
-------
S
--
E
C
C
E
Q
L
E
--------
G
M
D
----------
E
----------
S
----------
C
R
C
---------
E
G
L
R
-
M
M
-
M
R
-
M
--
M
--
Q
Q
K
EM
Q
P
R
G
E
Q
M
R
R
M
M
--
R
-
L
A
-
E
N
I
--
P
S
R
-
C
N
--------
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
60.38
25%
-67
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------
A
G
C
---------
N
A
G
Q
-------
L
T
V
----
C
T
G
A
I
A
G-------------
G
-----
A
-------
R
---------
P
----------
T
-------
A
--
A
C
C
S
S
L
R
---------
A
Q
----------
Q
----------
G
----------
C
F
C
---------
Q
F
A
K
D
P
R
-
Y
G
-
R
--
Y
--
V
-------------
N
S
--
P
-
N
A
-
R
K
A
--
V
S
S
-
C
G
--------
I
A
L
P
---------------------------
T
------
C
---
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
59.47
17%
-92
- C4 -
1S6D
-
2SS8_HELAN
A:
[10-97]
--------------------------------------------------------------------
G
C
---------
Y
Q
Q
M
E
E
A
E
--
M
L
N
H
----
C
G
M
Y
L
M
--------------
K
-----
N
LGERS--
Q
VSPR
M
R
E
E
D
H
----------
K
-------
Q
--
L
C
C
M
Q
L
K
--------
N
L
D
----------
E
----------
K
----------
C
M
C
---------
P
A
I
M
-
M
M
-
L
N
-
E
--
P
--
M
WIRMR
D
Q
------
V
M
--
S
-
M
A
-
H
N
L
--
P
I
E
-
C
N
--------
L
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
58.09
25%
-92
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[8-69]
------------------------------------------------------------------------------------------
L
T
V
----
C
T
G
A
I
A
--------------
G
G----
A
-------
R
---------
P
----------
T
-------
A
--
A
C
C
S
S
L
R
--------
A
Q
-----------
Q
----------
G
----------
C
F
C
---------
Q
F
A
K
D
P
R
-
Y
G
-
R
--
Y
--
V
-------------
N
S
--
P
-
N
A
-
R
K
A
--
V
S
S
-
C
G
--------
I
A
L
P
---------------------------
T
------
C
---
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
SP3
57.71
16%
-121
- C4 -
1VLW
-
?
A:
[-1-203]
H
M
K
M
E
E
L
F
K
K
H
KIVAVLRANS
V
E
E
A
K
E
K
A
L
A
V
F
E
G
GVH
L
I
E
I
T
FTVPD
A
D
T
V
I
K
E
L
S
F
L
------
K
E
K
G
A
I
I
G
A
G
TVTS
V
E
Q
C
R
--
K
--
A
V
E
S
----
G
A
E
F
I
V
--------------
S
-----
P
-------
H
---------
L
----------
D
-------
E
--
E
I
S
Q
F
C
K
--------
E
K
G
----------
V
----------
F
----------
Y
M
P
---------
G
V
M
T
P
T
E
-
L
V
-
K
--
A
--
M
-------------
K
L
--
G
H
T
I
-
L
K
L
F
P
G
E
V
-
V
G
P
Q
F
V
K
A
M
K
G
P
F
P
----
N
V
K
F
V
P
T
G
GVNLDN
V
C
E
W
F
K
A
G
V
L
------
A
V
G
V
G
S
A
L
V
-
K
GT
P
D
E
V
R
E
K
A
K
A
F
V
E
K
I
R
G
C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70........80..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
DM
S
P
S
Q
C
K
E
E
Q
R
L
L
V
N
A
C
R
A
V
IFGRSP
S
P
S
C
C
E
R
V
R
V
T
H
V
E
C
VCPVI
T
P
Q
L
A
A
L
I
G
V
E
R
T
I
K
Q
I
E
GCGRTVPHNFKCGSITTP
46
95.81
100%
-112
- C- -
M046
-
A:
[1-145]
D
M
S
P
S
Q
C
K
E
E
Q
R
L
L
V
N
A
C
R
A
V
I
F
G
R
S
P
S
P
S
C
C
E
R
V
R
V
T
H
V
E
C
V
C
P
V
I
T
P
Q
L
A
A
L
I
G
V
E
R
T
I
K
Q
I
E
G
C
G
R
T
V
P
H
N
F
K
C
G
S
I
T
T
P
45
94.00
100%
-109
- C- -
M045
-
A:
[1-145]
D
M
S
P
S
Q
C
K
E
E
Q
R
L
L
V
N
A
C
R
A
V
I
F
G
R
S
P
S
P
S
C
C
E
R
V
R
V
T
H
V
E
C
V
C
P
V
I
T
P
Q
L
A
A
L
I
G
V
E
R
T
I
K
Q
I
E
G
C
G
R
T
V
P
H
N
F
K
C
G
S
I
T
T
P