@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-12 )
MTCQQALTELIPCRPFLIAVAPSPTAPCCTGVSDVKAAASTTEARRDLCECFEKNAPAYGVKPEKAKLLPGLCGVTVPVPIDPSVNCATIT
Atome Classification :
(20 SA)
------------------------------------------------------..----......--.---10.......----.20---.-----------------.------------.-----.-----------....---.30.....-----...40----------.........50..-.------.-....------60--------.-------.---------------.......---70........80.....----...90-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------MT----CQQALT--E---LIPCRPFLI----AV----A-----------------P------------S-----P-----------TAPC---CTGVSDVK-----AAAS-----------TTEARRDLCECFE-K------N-APAY------G---------V-------K---------------PEKAKLL---PGLCGVTVPVPIDPSVN----CATIT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
92.94
38%
-112
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[2-92]
------------------------------------------------------
I
T
----
C
G
Q
V
S
S
--
S
---
L
A
P
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I
P
Y
V
R
----
G
G
----------------------
G
------------
A
-----
V
-----------
P
P
A
C
---
C
N
G
I
R
N
V
N
-----
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
-
Q
------
L
-
S
A
S
V
P-----
G
---------
V
-------
N
---------------
P
N
N
A
A
A
L
---
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
N
----
C
A
T
V
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
92.61
40%
-107
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
------------------------------------------------------
M
T
----
C
G
Q
V
Q
G
--
N
---
L
A
Q
C
I
G
F
L
Q
----
K
G
----------------------
G
------------
V
-----
V
-----------
P
P
S
C
---
C
T
G
V
K
N
I
L
-----
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
-
A
------
A
-
A
G
A
V
R-----
G
---------
I
-------
N
---------------
P
N
N
A
E
A
L
---
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
----
C
N
S
I
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
92.11
38%
-104
- C3 -
1T12
-
NLTP1_TOBAC
A:
[2-91]
------------------------------------------------------
I
T
----
C
G
Q
V
T
S
--
N
---
L
A
P
C
L
A
Y
L
R
----
N
T
----
G
------------------------------------
P
-----------
L
G
R
C
---
C
G
G
V
K
A
L
V
-----
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
-
S
------
A
-
A
G
A
I
S-----
G
---------
I
-------
N
---------------
L
G
K
A
A
G
L
---
P
S
T
C
G
V
N
I
P
Y
K
I
S
P
S
T
D
----
C
S
K
V
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
SP3
83.63
31%
-108
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------A
I
S
----
C
G
Q
V
A
S
--
A
---
I
A
P
C
I
S
Y
A
R
----
G
Q
----
G
-----------------
S
------------
G
-----
P
-----------
S
A
G
C
---
C
S
G
V
R
S
L
N
-----
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
-
N
------
A
-
A
A
G
V
S-----
G
---------
L
-------
N
---------------
A
G
N
A
A
S
I
---
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
----
C
S
R
V
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
82.83
32%
-93
- C3 -
1AFH
-
NLTP_MAIZE
A:
[2-93]
------------------------------------------------------
I
S
----
C
G
Q
V
A
S
--
A
---
I
A
P
C
I
S
Y
A
R
----
G
Q
----
G
-----------------
S
------------
G
-----
P
-----------
S
A
G
C
---
C
S
G
V
R
S
L
N
-----
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
-
N
------
A
-
A
A
G
V
S-----
G
---------
L
-------
N
---------------
A
G
N
A
A
S
I
---
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
----
C
S
R
V
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
81.53
25%
-101
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
------------------------------------------------------
I
D
----
C
G
H
V
D
S
--
L
---
V
R
P
C
L
S
Y
V
Q
----
G
G
----------------------
P
------------
G
-----
P
-----------
S
G
Q
C
---
C
D
G
V
K
N
L
H
-----
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
-
G
------
I
-
A
R
G
I
H-----
N
---------
L
-------
N
---------------
E
D
N
A
R
S
I
---
P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
D
----
C
S
R
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
63.15
33%
-95
- C3 -
2RKN
2
DIRL1_ARATH
A:
[4-75]
-------------------------------------------------------
L
----
C
G
M
S
Q
D
--
E
---
L
N
E
C
K
P
A
V
S
----
K
E
----
N
-----------------
P
T-----------
S
-----
P
-----------
S
Q
P
C
---
C
T
A
L
Q
H
A
------------------------
D
F
A
C
L
C
G
Y
K
N
-
S
------
P
W
L
G
S
F
------
G
---------
V
-------
D
---------------
P
E
L
A
S
A
L
---
P
K
Q
C
G
L
A
N
A
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
62.51
32%
-84
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------AI
D
L
----
C
G
M
S
Q
D
--
E
---
L
N
E
C
K
P
A
V
S
----
K
E
----
N
-----------------
P
T-----------
S
-----
P
-----------
S
Q
P
C
---
C
T
A
L
Q
H
A
D
------------------------
F
A
C
L
C
G
Y
K
N
S
P
------
W
-
L
G
S
F
------
G
---------
V
-------
D
---------------
P
E
L
A
S
A
L
---
P
K
Q
C
G
L
A
N
A
P
------
T
----
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
58.02
15%
-74
- C3 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
-----------------------------------------GPMRRERGRQGDS
S
S
----
C
E
R
Q
V
D
--
R
VN-
L
K
P
C
E
Q
H
I
M
----
Q
R
----
I
MGEQEQYDSYDIRSTR
S
S
------------
D
-----
Q
-----------
Q
Q
R
C
---
C
D
E
L
N
E
M
E
NTQGC
M
C
E
A
-----------
L
Q
Q
I
M
E
N
Q
C
D
R
L
Q
-
D
------
R
-
Q
M
V
Q
------
Q
---------
F
-------
K
----------------
R
E
L
M
S
L
---
P
Q
Q
C
N
F
R
A
P
Q
R
C
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L
D
V
S
----
G
G
R
C
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
57.23
17%
-116
- C3 -
1BEA
-
ITRF_MAIZE
A:
[16-110]
--------------------------------------------------------------------
P
---
L
P
S
C
R
W
Y
V
T
S
R
TC
G
I
----
G
-----------------
P
------------
R
-----
L
P
W
P
E
L
------
K
R
R
C
---
C
R
E
L
A
D
I
------------------------
P
A
Y
C
R
C
T
A
L
S
-
I
------
L
-
M
D
G
A
I
P
P
G
--
P
---------
D
AQL
E
G
R
L
E
D
LPGCP
R
E
V
Q
-----
R
G
F
A
A
T
L
VT-
E
A
E
C
N
L
A
T
I
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
56.62
17%
-109
- C3 -
1B1U
-
IAAT_ELECO
A:
[15-109]
-----------------------------------------------------------------
N
--
P
---
L
D
S
C
R
W
Y
V
S
----
T
R
T
CGV
G
-----------------
P
------------
R
L----
A
T
Q
E
M
-------
K
A
R
C
---
C
R
Q
L
E
A
I
------------------------
P
A
Y
C
R
C
E
A
V
R
-
I
------
L
-
M
D
G
V
V
T
PS--
G
Q
H
E
G
RLLQD
L
PGCP
R
--
Q
V
Q
R
A
-----------
F
A
P
K
L
V
T
---
E
V
E
C
N
L
A
T
I
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
56.05
23%
-90
- C3 -
1SM7
-
?
A:
[14-101]
--------------------------------------------------------------------
H
---
L
R
A
C
Q
Q
W
I
R
----
Q
Q
----
L
AG
S
--------------
P
F
S
E
NQWGPQQGP
S
-----
L
-----------
R
E
Q
C
---
C
N
E
L
Y
Q
E
------------------------
D
Q
V
C
V
C
P
T
L
K
-
Q
------
A
-
A
K
S
V
RVQ---
G
Q--------
H
GPFQST
R
I
---------------
Y
Q
I
A
K
N
L
---
P
N
V
C
N
M
K
Q
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
56.03
16%
-102
- C3 -
1W2Q
-
CONG_ARAHY
A:
[23-113]
-----------------------------------------------------------------
V
--
N
---
L
K
P
C
E
Q
H
I
M
----
Q
R
I
MG-
E
QE---------------
Q
Y-----------
D
-----
S
YDIRSTR
S
S
D
Q
Q
Q
R
C
---
C
D
E
L
N
E
M
E
--------------------
N
--
T
Q
G
C
M
C
E
A
L
Q
-
Q
------
I
-
M
E
N
Q
CDRLQ-
D
RQ-------
M
V
Q
-----
Q
F
--------------
K
R
E
L
M
S
L
---
P
Q
Q
C
N
F
R
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
52.01
20%
-86
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
----------------------------------------------P
Y
G
R
G
R
T
E
S
G
----
C
Y
Q
Q
M
E
--
E
A
EM
L
N
H
C
G
M
Y
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----
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----
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GERSQVSPR
M
R
E
-----
E
------------
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-----
H
-----------
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C
---
C
M
Q
L
K
N
L
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-----
E
K
C
M
-------------------
C
P
A
I
M
-
M
M
L
N
EPM
W
-
I
R
M
R
------
D
---------
Q
-------
V
---------------
M
S
M
A
H
N
L
---
P
I
E
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N
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M
-------
S
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P
----
C
Q
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
51.40
26%
-75
- C3 -
1PSY
-
2SS_RICCO
A:
[25-117]
-----------------------------------------------------------------
K
--
D
---
L
S
S
C
E
R
Y
L
R
----
Q
S
S
S
R
R
S
-----------------
T
GEEVLR------
M
-----
P
GDENQQQESQQ
L
Q
Q
C
---
C
N
Q
V
K
Q
V
------------------------
R
D
E
C
Q
C
E
A
I
K
-
Y
------
I
-
A
E
D
Q
I
Q
Q
---
G
Q--------
L
HGEE
S
E
R
V
---------------
A
Q
R
A
G
E
I
---
V
S
S
C
G
V
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
SP3
50.22
17%
-97
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------
A
G
----
C
--
N
A
G
--
Q
---
L
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V
C
T
G
A
I
A
----
G
G
----
A
-----------------
R
------------------
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-----------
T
A
A
C
---
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S
L
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A
-------------------------
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F
A
K
-
D
------
P
-
R
Y
G
R
------
Y
---------
V
-------
N
---------------
S
P
N
A
R
K
A
---
V
S
S
C
G
I
A
L
P
-------
T
----
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
SP3
49.97
10%
-104
- C3 -
1QPO
-
NADC_MYCTU
A:
[116-284]
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
----
D
N
H
V
A
A
A
G
S
---
V
V
D
A
L
R
A
V
R
----
N
-----------------------
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------------
A
-----
P
-----------
D
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
-----
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
-
S
------
R
-
A
P
T
V
M
L
E
S
S
G
G
---------
L
-------
S
---------------
L
Q
T
A
A
T
Y
----
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
----
T
H
S
V
R
VL
D
I
G
L
D
M---------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
47.40
21%
-72
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------
A
G
----
C
N
A
--
G
--
Q
---
L
T
V
C
T
G
A
I
A
----
G
-----
G
-----------------
A
------------
R
-----
P
-----------
T
A
A
C
---
C
S
S
L
R
-------------------------
A
Q
Q
G
C
F
C
Q
F
A
K
-
D
------
P
-
R
Y
G
R
------
Y
---------
V
-------
N
---------------
S
P
N
A
R
K
A
---
V
S
S
C
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I
A
L
P
-------
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----
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
45.61
16%
-73
- C3 -
1S6D
-
2SS8_HELAN
A:
[19-97]
-----------------------------------------------------------------
E
--
M
---
L
N
H
C
G
M
Y
L
M
----
K
N
----
L
GERS-------------
Q
VSP---------
R
M
R
E
E
D
H
-----------
K
Q
L
C
---
C
M
Q
L
K
N
L
D
-----
E
-------------------
K
C
M
C
P
A
I
M
-
M
------
M
-
L
N
E
P
MW----
I
RMR
D
-----
Q
-------
V
---------------
M
S
M
A
H
N
L
---
P
I
E
C
N
L
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
SP3
44.96
17%
-78
- C3 -
1B0A
-
FOLD_ECOLI
A:
[2-288]
--------------------------------------------------AAKI
I
D
G
K
T
I
A
Q
Q
V
R
S
--
E
---
V
A
Q
K
V
Q
A
R
I
----
A
A
----
G
-----------------
L
------------
R
-----
A
-----------
P
--------
G
L
A
V
V
-------
L
V
G
-----------
S
N
P
A
S
Q
I
Y
V
A
S
K
R
-
K
------
A
-
C
E
E
V
------
G
---------
F
-------
V
SR
S
Y
D
L
P
ETTS
E
A
E
L
L
E
L
I
D
T
L
N
A
D
N
T
I
D
G
I
L
V
Q
L
P
L
P
A
G
I
D
N
V
K
V
L
E
R
I
H
PDKDVDGFH
P
Y
N
V
G
R
L
C
Q
RAPRLRP
C
T
P
R
G
I
V
T
L
L
E
R
Y
NIDTFG
L
N
A
V
V
IGASNIV
G
R
P
M
S
M
E
L
L
L
A
GCT
T
T
V
T
H
RFTKN
L
R
H
H
V
E
N
AD
L
L
I
V
A
VGKPGFIPGDWIKEG
A
I
V
I
D
V
G
I
N
R
L
ENG
K
V
V
G
DVV
F
E
D
A
A
K
R
AS
Y
I
T
P
VPGG
V
G
P
M
T
V
A
T
L
I
E
N
T
L
Q
A
C
V
EYHDPQDE
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MTCQQALTELIPCRPFLIAVAPSPTAPCCTGVSDVKAAASTTEARRDLCECFEKNAPAYGVKPEKAKLLPGLCGVTVPVPIDPSVNCATIT
46
99.66
100%
-132
- C- -
M046
-
A:
[1-92]
M
T
C
Q
Q
A
L
T
E
L
I
P
C
R
P
F
L
I
A
V
A
P
S
P
T
A
P
C
C
T
G
V
S
D
V
K
A
A
A
S
T
T
E
A
R
R
D
L
C
E
C
F
E
K
N
A
P
A
Y
G
V
K
P
E
K
A
K
L
L
P
G
L
C
G
V
T
V
P
V
P
I
D
P
S
V
N
C
A
T
I
T
41
97.39
100%
-116
- C- -
M041
-
A:
[1-92]
M
T
C
Q
Q
A
L
T
E
L
I
P
C
R
P
F
L
I
A
V
A
P
S
P
T
A
P
C
C
T
G
V
S
D
V
K
A
A
A
S
T
T
E
A
R
R
D
L
C
E
C
F
E
K
N
A
P
A
Y
G
V
K
P
E
K
A
K
L
L
P
G
L
C
G
V
T
V
P
V
P
I
D
P
S
V
N
C
A
T
I
T
40
97.08
100%
-126
- C- -
M040
-
A:
[1-92]
M
T
C
Q
Q
A
L
T
E
L
I
P
C
R
P
F
L
I
A
V
A
P
S
P
T
A
P
C
C
T
G
V
S
D
V
K
A
A
A
S
T
T
E
A
R
R
D
L
C
E
C
F
E
K
N
A
P
A
Y
G
V
K
P
E
K
A
K
L
L
P
G
L
C
G
V
T
V
P
V
P
I
D
P
S
V
N
C
A
T
I
T