@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA1754: (2016-03-28 )
MKIRKSILAGTLAIVLASPLVTNLDKNEAQASTSLPTSNEYQNEKLANELKSLLDELNVNELATGSLNTYYKRTIKISGLKAMYALKSKDFKKMSEAKYQLQKIYNEIDEALKSKY
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40........50.....-----...60.---.......70........80........90........100.......110....--------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MK
I
R
K
S
I
L
A
G
T
L
A
I
V
L
A
S
P
L
VTNLDKNEAQASTSLPTSNEY
Q
N
E
K
L
A
N
E
L
K
S
L
L
D
E-----L
N
V
N
E
L---ATGSLN
T
Y
Y
K
R
T
I
K
ISG
L
K
A
M
Y
A
L
K
S
K
D
F
K
K
M
S
E
A
K
Y
Q
L
Q
K
I
Y
N
E
I
D
E
A
L
KSKY--------------------------------------------------------------------------------
2
PsiBlast_PDB
93.97
97%
-62
- C4 -
3L3O
-
SCIN_STAAM
M:
[5-88]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
L
P
T
S
N
E
Y
Q
N
E
K
L
A
N
E
L
K
S
L
L
D
E
-----
L
N
V
N
E
L
---
A
T
G
S
L
N
T
Y
Y
K
R
T
I
K
I
S
G
Q
K
A
M
Y
A
L
K
S
K
D
F
K
K
M
S
E
A
K
Y
Q
L
Q
K
I
Y
N
E
I
D
E
A
L
K
S
K
Y
--------------------------------------------------------------------------------
24
HHSearch
93.80
99%
-62
- C4 -
2WIN
-
SCIN_STAAR
M:
[9-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
L
P
T
S
N
E
Y
Q
N
E
K
L
A
N
E
L
K
S
L
L
D
E
-----
L
N
V
N
E
L
---
A
T
G
S
L
N
T
Y
Y
K
R
T
I
K
I
S
G
Q
K
A
M
Y
A
L
K
S
K
D
F
K
K
M
S
E
A
K
Y
Q
L
Q
K
I
Y
N
E
I
D
E
A
L
K
S
K
Y
--------------------------------------------------------------------------------
4
PsiBlast_PDB
93.32
97%
-62
- C4 -
3OHX
-
SCIN_STAAM
M:
[5-88]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
L
P
T
S
N
E
Y
Q
N
E
K
L
A
N
E
L
K
S
L
L
D
E
-----
L
N
V
N
E
L
---
A
T
G
S
L
N
T
Y
Y
K
R
T
I
K
I
S
G
Q
K
A
M
Y
A
L
K
S
K
D
F
K
K
M
S
E
A
K
Y
Q
L
Q
K
I
Y
N
E
I
D
E
A
L
K
S
K
Y
--------------------------------------------------------------------------------
3
PsiBlast_PDB
93.23
97%
-62
- C4 -
3NMS
-
SCIN_STAAM
M:
[5-88]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
L
P
T
S
N
E
Y
Q
N
E
K
L
A
N
E
L
K
S
L
L
D
E
-----
L
N
V
N
E
L
---
A
T
G
S
L
N
T
Y
Y
K
R
T
I
K
I
S
G
Q
K
A
M
Y
A
L
K
S
K
D
F
K
K
M
S
E
A
K
Y
Q
L
Q
K
I
Y
N
E
I
D
E
A
L
K
S
K
Y
--------------------------------------------------------------------------------
1
PsiBlast_PDB
92.55
93%
-62
- C4 -
2WIN
-
SCIN_STAAR
M:
[9-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
L
P
T
S
N
E
Y
Q
N
E
K
L
A
N
E
L
K
S
L
L
D
E
-----
L
N
V
N
E
L
---
A
T
G
S
L
N
T
Y
Y
K
R
T
I
K
I
S
G
Q
K
A
M
Y
A
L
K
S
K
D
F
K
K
M
S
E
A
K
Y
Q
L
Q
K
I
Y
N
E
I
D
E
A
L
K
S
K
Y
--------------------------------------------------------------------------------
26
HHSearch
82.61
99%
-51
- C4 -
2QFF
-
SCIN_STAAR
A:
[9-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Y
Q
N
E
K
L
A
N
E
L
K
S
L
L
D
E
-----
L
N
V
N
E
L
---
A
T
G
S
L
N
T
Y
Y
K
R
T
I
K
I
S
G
Q
K
A
-
Y
A
L
K
S
K
D
F
K
K
M
S
E
A
K
Y
Q
L
Q
K
I
Y
N
E
I
D
E
A
L
K
-----------------------------------------------------------------------------------
6
PsiBlast_PDB
82.07
96%
-51
- C4 -
2QFF
-
SCIN_STAAR
A:
[9-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Y
Q
N
E
K
L
A
N
E
L
K
S
L
L
D
E
-----
L
N
V
N
E
L
---
A
T
G
S
L
N
T
Y
Y
K
R
T
I
K
I
S
G
Q
K
A
-
Y
A
L
K
S
K
D
F
K
K
M
S
E
A
K
Y
Q
L
Q
K
I
Y
N
E
I
D
E
A
L
K
-----------------------------------------------------------------------------------
37
Fugue
81.98
98%
-51
- C4 -
2QFF
-
SCIN_STAAR
A:
[9-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Y
Q
N
E
K
L
A
N
E
L
K
S
L
L
D
E
-----
L
N
V
N
E
L
---
A
T
G
S
L
N
T
Y
Y
K
R
T
I
K
I
S
G
Q
K
A
-
Y
A
L
K
S
K
D
F
K
K
M
S
E
A
K
Y
Q
L
Q
K
I
Y
N
E
I
D
E
A
L
K
-----------------------------------------------------------------------------------
5
PsiBlast_PDB
80.58
95%
-54
- C4 -
3L5N
-
SCIN_STAAM
M:
[5-88]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
L
P
T
S
N
E
Y
Q
N
E
K
L
A
N
E
L
K
S
L
L
D
E
-----
L
N
V
N
E
L
---
A
T
G
S
L
N
T
Y
Y
K
R
T
I
K
I
S
G
Q
K
A
M
Y
A
L
K
S
K
D
F
K
K
M
S
E
A
K
Y
Q
L
Q
K
I
Y
N
E
I
D
E
A
L
K
S
K
Y
--------------------------------------------------------------------------------
10
PsiBlast_PDB
74.79
32%
-76
- C4 -
3T47
-
?
A:
[11-81]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
H
Q
A
L
V
D
Q
L
H
E
L
I
A
N
-----
T
D
L
N
K
L
---
S
Y
L
N
L
D
A
F
Q
K
R
D
I
L
A
A
H
Y
I
A
K
S
A
I
R
T
K
N
L
D
Q
M
T
K
A
K
Q
R
L
E
S
I
Y
N
S
I
S
N
P
L
------------------------------------------------------------------------------------
27
HHSearch
74.61
31%
-76
- C4 -
3T47
-
?
A:
[11-81]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
H
Q
A
L
V
D
Q
L
H
E
L
I
A
N
-----
T
D
L
N
K
L
---
S
Y
L
N
L
D
A
F
Q
K
R
D
I
L
A
A
H
Y
I
A
K
S
A
I
R
T
K
N
L
D
Q
M
T
K
A
K
Q
R
L
E
S
I
Y
N
S
I
S
N
P
L
------------------------------------------------------------------------------------
38
Fugue
74.44
30%
-76
- C4 -
3T47
-
?
A:
[11-81]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
H
Q
A
L
V
D
Q
L
H
E
L
I
A
N
-----
T
D
L
N
K
L
---
S
Y
L
N
L
D
A
F
Q
K
R
D
I
L
A
A
H
Y
I
A
K
S
A
I
R
T
K
N
L
D
Q
M
T
K
A
K
Q
R
L
E
S
I
Y
N
S
I
S
N
P
L
------------------------------------------------------------------------------------
8
PsiBlast_PDB
73.63
48%
-45
- C4 -
4H6H
-
?
A:
[8-83]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
S
Q
F
H
D
K
R
I
A
E
E
L
R
T
L
L
N
K
-----
S
N
V
Y
A
L
---
A
A
G
S
L
N
P
Y
Y
K
R
T
I
M
M
N
E
Y
R
A
K
A
A
L
K
K
N
D
F
V
S
M
A
D
A
K
V
A
L
E
K
I
Y
K
E
I
D
E
I
I
------------------------------------------------------------------------------------
9
PsiBlast_PDB
72.69
54%
-60
- C4 -
3T4A
-
?
G:
[18-83]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
E
L
R
T
L
L
N
K
-----
S
N
V
Y
A
L
---
A
A
G
S
L
N
P
Y
Y
K
R
T
I
M
M
N
E
Y
R
A
K
A
A
L
K
K
N
D
F
V
S
M
A
D
A
K
V
A
L
E
K
I
Y
K
E
I
D
E
I
I
------------------------------------------------------------------------------------
23
PsiBlast_CBE
71.78
54%
-55
- C4 -
3T49
2
?
B:
[6-71]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
E
L
R
T
L
L
N
K
-----
S
N
V
Y
A
L
---
A
A
G
S
L
N
P
Y
Y
K
R
T
I
M
M
N
E
Y
R
A
K
A
A
L
K
K
N
D
F
V
S
M
A
D
A
K
V
A
L
E
K
I
Y
K
E
I
D
E
I
I
------------------------------------------------------------------------------------
22
PsiBlast_CBE
71.31
54%
-61
- C4 -
3T49
3
?
C:
[6-71]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
E
L
R
T
L
L
N
K
-----
S
N
V
Y
A
L
---
A
A
G
S
L
N
P
Y
Y
K
R
T
I
M
M
N
E
Y
R
A
K
A
A
L
K
K
N
D
F
V
S
M
A
D
A
K
V
A
L
E
K
I
Y
K
E
I
D
E
I
I
------------------------------------------------------------------------------------
39
Fugue
70.47
35%
-45
- C4 -
4Q86
4
YCAO_ECOLI
A:
[2-583]
T
Q
T
F
I
P
GKDAA
L
E
D
S
I
A
R
F
Q
Q
K
L
S
D
L
G
F
Q
I
E
EASWLNPVPN
V
W
S
V
H
I
R
D
KECAL
C
F
T
N
G
K
G
AT
K
K
A
A
L
A
S
A
L
G
E
Y
F
E
R
L
S
T
NYFFADFWLG
E
T
I
A
N
GPFVHYPN
E
K
W
F
P
L
TENDDVPEGLLD
D
R
L
R
A
F
Y
D
P
ENELTGSMLIDLQSGNEDR
G
I
C
G
L
P
F
T
RQSDN
Q
T
V
Y
I
P
M
N
I
I
G
N
LYVSNG
M
S
A
GNT
R
N
E
A
R
V
Q
G
L
S
E
V
F
E
R
Y
V
K
N
R
I
I
A
E
S
I
S
L
P
E
IP
A
D
V
L
A
R
Y
P
A
V
V
E
A
I
E
T
L
E
A
E
G
F
P
I
F
A
Y
D
GSLGGQYP
V
I
C
V
V
L
F
NPANG
T
C
F
A
S
F
G
A
H
PD
F
G
V
A
L
E
R
T
V
T
E
L
L
QGRGLKDLDVFTPPTFD
D
E
E
V
A
E
H
T
N
L
E
T
H
F
I
DSS
G
L
I
S
WDLFKQDADYPFVDWNFSGT
T
E
E
E
F
A
T
L
M
A
I
F
N
K
E
D
K
E
V
Y
I
A
D
Y
EHLG
V
Y
A
C
R
I
I
V
P
GMSDIYP
A
E
D
L
W
LANNSMG
S
H
L
R
E
T
I
L
-------------------------
S
L
P
G
S
-
E
W
E
K
E
D
Y
L
N
L
I
E
Q
L
D
E
E
GFDDF
T
R
V
R
E
L
L
GL
A
T
G
S
D
N
G
W
Y
--
T
L
R
I
G
E
L
K
A
M
L
A
L
A
G
G
D
L
E
Q
A
L
V
W
T
E
W
T
M
E
F
N
S
S
V
F
S
P
E
R
A
N
Y
Y
R
C
L
Q
T
L
L
L
L
A
Q
EEDRQPLQY
L
N
A
F
V
R
M
YG
A
D
A
V
E
A
A
S
A
A
M
S
GEAAFYGLQPVDSDLHAF
A
A
H
Q
S
L
L
K
A
Y
E
K
L
Q
R
A
K
A
A
F
7
PsiBlast_PDB
70.33
48%
-50
- C4 -
4H6I
-
?
A:
[9-83]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
Q
F
H
D
K
R
I
A
E
E
L
R
T
L
L
N
K
-----
S
N
V
Y
A
L
---
A
A
G
S
L
N
P
Y
Y
K
R
T
I
M
M
N
E
Y
R
A
K
A
A
L
K
K
N
D
F
V
S
M
A
D
A
K
V
A
L
E
K
I
Y
K
E
I
D
E
I
I
------------------------------------------------------------------------------------
21
PsiBlast_CBE
69.29
54%
-63
- C4 -
3T49
1
?
D:
[6-71]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
E
L
R
T
L
L
N
K
-----
S
N
V
Y
A
L
---
A
A
G
S
L
N
P
Y
Y
K
R
T
I
M
M
N
E
Y
R
A
K
A
A
L
K
K
N
D
F
V
S
M
A
D
A
K
V
A
L
E
K
I
Y
K
E
I
D
E
I
I
------------------------------------------------------------------------------------
11
PsiBlast_PDB
58.72
31%
-24
- C4 -
3T48
-
?
A:
[11-81]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
H
Q
A
L
V
D
Q
L
H
E
L
I
A
N
-----
T
D
L
N
K
L
---
S
Y
L
N
L
D
A
F
Q
K
R
D
I
L
A
A
H
Y
I
A
K
S
A
I
R
T
K
N
L
D
Q
M
T
K
A
K
Q
R
L
E
S
I
Y
N
S
I
S
N
P
L
------------------------------------------------------------------------------------