@TOME V2.3
(Nov 2016)

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Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : Lmo1275: (2016-03-23 )
MADYLVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTENDYEPRYITIRGKGPVLKELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKLRVVFNEITKEAVKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIIDREKEINNFKPEEYWTIDGNFLKGKKKFQANFYGVNGKKKKLSTADDVKEVMSAIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLGKQGTVGLITYMRTDSTRIADSAILEASNYIKETYGPEFSRNHKRSDKNAKGAQDAHEAIRPTSAMRSPQEVKEYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDNNGVNFRANGSKIKFHGFMKVYVESNDDNTEEKENILPDLKKGDKVQSESLEQRQHFTQPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIEEYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADAEMEKIEIKDEPAGIDCDLCGAPMVYKMGKYGKFLACSRFPDCRNTKAIVKEIGVTCPKCEKGHVIERKSKKKRIFYGCDRYPDCDYVSWDKPVERACPKCEKRALVEKKLKKGVQVQCTNCDYKESTQQ

Atome Classification :

(20 SA) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.-------------------.-------------.-------------------.....30........40--------.--.-----.-----..-...-.50.-.--.-...--..-60........70........80........90....---....100--........110.......120.......--130.......140.......150......-.-----160.......170.......180.......190.......-200-.-......210------.......220.......----230.......240.......250.......260.......270.......280.......290.......300.......310.......320.--...---..-------.330.......340.......350--------..--......-----------360-----.......370.......380.......390...--....400.......--410--.........420.......430.......440.......450..---.....460.......470---------------.........480.......490.....-..500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MADYLVIVESPAKAKTIEKYLG-------------------K-------------K-------------------FKVKASMGHVRDLPKS---------Q--M-----G-----VD-TEN-DYEP-R--Y-ITI--RG-KGPVLKELKQAAKKAKKVYLAADPDREGEAIAWHLA---NSLELD---QSDKLRVVFNEITKEAVKESFKTPRKID--MDLVNAQQARRILDRLVGYNISPILWKKV-K-----KGLSAGRVQSIALRIIIDREKEINNFKPEEYWTIDGNFLK-GKK-K-FQANFYGVN------GKKKKLSTADDVKEVMS----AIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLGKQGTVGLITYMRTDSTRIADSAILEASNYIKETYG--PEF---SR-------NHKRSDKNAKGAQDAHEAIRPTS---------AM--RSPQEV-----------KEY-----LTRDQLRLYRLIWERFIASQMTPAVLDTMRVDL--DNNGVNFRANGSKI--K----FHGFMKVYVESNDDNTEEKENILPDLKKGDKVQSESLEQRQHFT---QPPPRYTEARLVKTLE-----------------EIGIGRPSTYSPTLDTIQRRNYVSLTN-KRFIPTELGEIVNEMIEEYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADAEMEKIEIKDEPAGIDCDLCGAPMVYKMGKYGKFLACSRFPDCRNTKAIVKEIGVTCPKCEKGHVIERKSKKKRIFYGCDRYPDCDYVSWDKPVERACPKCEKRALVEKKLKKGVQVQCTNCDYKESTQQ
11 PsiBlast_PDB 92.0441% -62 - C4 -1MW8 TOP1_ECOLI X:[2-584] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GKALVIVESPAKAKTINKYLG-------------------S-------------D-------------------YVVKSSVGHIRDLPTSGDERGALVNR--M-----G-----VD-PWH-NWEA-H--Y-EVL--PG-KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLR---EVIGGD---DARYSRVVFNEITKNAIRQAFNKPGELN--IDRVNAQQARRFMDRVVGYMVSPLLWKKI-A-----RGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGE-A-LALQVTHQN------DKPFRPVNKEQTQAAVS----LLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEA---------GYITYMRTDSTNLSQDAVNMVRGYISDNFG--KKYLPESP-------NQYAS--------EAREAIRPSD---------VN--VMAESL-----------KD------MEADAQKLYQLIWRQFVACQMTPAKYDSTTLTV--GAGDFRLKARGRIL--R----FDGWTKVMPA--------EDRILPAVNKGDALTLVELTPAQHFT---KPPARFSEASLVKELE-----------------KRGIGRPSTYASIISTIQDRGYVRVEN-RRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENNLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEE-----------------------------------------------------------------------------------------------------------------------------
3 PsiBlast_PDB 91.3341% -65 - C4 -1CY6 TOP1_ECOLI A:[4-586] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GKALVIVESPAKAKTINKYLG-------------------S-------------D-------------------YVVKSSVGHIRDLPT-DERGALVN-R--M-----G-----VD-PWH-NWEA-H--Y-EVL--PG-KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLR---EVIGGD---DARYSRVVFNEITKNAIRQAFNKPGELN--IDRVNAQQARRFMDRVVGYMVSPLLWKKI-A-----RGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGE-A-LALQVTHQN------DKPFRPVNKEQTQAAVS----LLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEA---------GYITYMRTDSTNLSQDAVNMVRGYISDNFG--KKYLPESP-------NQYA----------AHEAIRPSD---------VN--VMAESL-----------KD------MEADAQKLYQLIWRQFVACQMTPAKYDSTTLTV--GAGDFRLKARGRIL--R----FDGWTKVMPALR------EDRILPAVNKGDALTLVELTPAQHFT---KPPARFSEASLVKELE-----------------KRGIGRPSTYASIISTIQDRGYVRVEN-RRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEE-----------------------------------------------------------------------------------------------------------------------------
13 PsiBlast_PDB 91.3041% -69 - C4 -3PX7 TOP1_ECOLI A:[2-584] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GKALVIVESPAKAKTINKYLG-------------------S-------------D-------------------YVVKSSVGHIRDLP--DERGALVN-R--M-----G-----VD-PWH-NWEA-H--Y-EVL--PG-KEKVVSELKQLAEKADHIYLATNLDREGEAIAWHLR---EVIGGD---DARYSRVVFNEITKNAIRQAFNKPGELN--IDRVNAQQARRFMDRVVGYMVSPLLWKKI-A-----RGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGE-A-LALQVTHQN------DKPFRPVNKEQTQAAVS----LLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEA---------GYITYMRTDSTNLSQDAVNMVRGYISDNFG--KKYLPESP-------NQYA-----------HEAIRPSD---------VN--VMAESL-----------KD------MEADAQKLYQLIWRQFVACQMTPAKYDSTTLTV--GAGDFRLKARGRIL--R----FDGWTKVMPALR---------ILPAVNKGDALTLVELTPAQHFT---KPPARFSEASLVKELE-----------------KRGIGRPSTYASIISTIQDRGYVRVEN-RRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEE-----------------------------------------------------------------------------------------------------------------------------
12 PsiBlast_PDB 91.2341% -63 - C4 -1MW9 TOP1_ECOLI X:[2-584] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GKALVIVESPAKAKTINKYLG-------------------S-------------D-------------------YVVKSSVGHIRDLPT-ERGALVN--R--M-----G-----VD-PWH-NWEA-H--Y-EVL--PG-KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLR---EVIGGD---DARYSRVVFNEITKNAIRQAFNKPGELN--IDRVNAQQARRFMDRVVGYMVSPLLWKKI-A-----RGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGE-A-LALQVTHQN------DKPFRPVNKEQTQAAVS----LLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEA---------GYITYMRTDSTNLSQDAVNMVRGYISDNFG--KKYLPESP-------NQYA-----------REAIRPSD---------VN--VMAESL-----------KD------MEADAQKLYQLIWRQFVACQMTPAKYDSTTLTV--GAGDFRLKARGRIL--R----FDGWTKVMPAL-------EDRILPAVNKGDALTLVELTPAQHFT---KPPARFSEASLVKELE-----------------KRGIGRPSTYASIISTIQDRGYVRVEN-RRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENNLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEE-----------------------------------------------------------------------------------------------------------------------------
6 PsiBlast_PDB 90.8941% -65 - C4 -1CY4 TOP1_ECOLI A:[4-586] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GKALVIVESPAKAKTINKYLG-------------------S-------------D-------------------YVVKSSVGHIRDLPT-DERGALVN-R--M-----G-----VD-PWH-NWEA-H--Y-EVL--PG-KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLR---EVIGGD---DARYSRVVFNEITKNAIRQAFNKPGELN--IDRVNAQQARRFMDRVVGYMVSPLLWKKI-A-----RGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGE-A-LALQVTHQN------DKPFRPVNKEQTQAAVS----LLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEA---------GYITYMRTDSTNLSQDAVNMVRGYISDNFG--KKYLPESP-------NQYA-----------HEAIRPSD---------VN--VMAESL-----------KD------MEADAQKLYQLIWRQFVACQMTPAKYDSTTLTV--GAGDFRLKARGRIL--R----FDGWTKVMPAL----------ILPAVNKGDALTLVELTPAQHFT---KPPARFSEASLVKELE-----------------KRGIGRPSTYASIISTIQDRGYVRVEN-RRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEE-----------------------------------------------------------------------------------------------------------------------------
8 PsiBlast_PDB 90.8441% -62 - C4 -3PWT TOP1_ECOLI A:[2-584] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GKALVIVESPAKAKTINKYLG-------------------S-------------D-------------------YVVKSSVGHIRDLPT-DERGALVN-R--M-----G-----VD-PWH-NWEA-H--Y-EVL--PG-KEKVVSELKQLAEKADHIYLATNLDREGEAIAWHLR---EVIGGD---DARYSRVVFNEITKNAIRQAFNKPGELN--IDRVNAQQARRFMDRVVGYMVSPLLWKKI-A-----RGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGE-A-LALQVTHQN------DKPFRPVNKEQTQAAVS----LLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEA---------GYITYMRTDSTNLSQDAVNMVRGYISDNFG--KKYLPESP-------NQYA----------AHEAIRPSD---------VN--VMAESL-----------KD------MEADAQKLYQLIWRQFVACQMTPAKYDSTTLTV--GAGDFRLKARGRIL--R----FDGWTKVMPALR------EDRILPAVNKGDALTLVELTPAQHFT---KPPARFSEASLVKELE-----------------KRGIGRPSTYASIISTIQDRGYVRVEN-RRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEE-----------------------------------------------------------------------------------------------------------------------------
4 PsiBlast_PDB 90.8341% -61 - C4 -1CY8 TOP1_ECOLI A:[4-586] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GKALVIVESPAKAKTINKYLG-------------------S-------------D-------------------YVVKSSVGHIRDLP--DERGALVN-R--M-----G-----VD-PWH-NWEA-H--Y-EVL--PG-KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLR---EVIGGD---DARYSRVVFNEITKNAIRQAFNKPGELN--IDRVNAQQARRFMDRVVGYMVSPLLWKKI-A-----RGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGE-A-LALQVTHQN------DKPFRPVNKEQTQAAVS----LLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEA---------GYITYMRTDSTNLSQDAVNMVRGYISDNFG--KKYLPESP-------NQYA-----------HEAIRPSD---------VN--VMAESL-----------KD------MEADAQKLYQLIWRQFVACQMTPAKYDSTTLTV--GAGDFRLKARGRIL--R----FDGWTKVMPALRKGD---EDRILPAVNKGDALTLVELTPAQHFT---KPPARFSEASLVKELE-----------------KRGIGRPSTYASIISTIQDRGYVRVEN-RRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEE-----------------------------------------------------------------------------------------------------------------------------
33 HHSearch 89.8643% -58 - C4 -1MW9 TOP1_ECOLI X:[2-581] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GKALVIVESPAKAKTINKYLG-------------------S-------------D-------------------YVVKSSVGHIRDLPT--------------------ERGALVNRMGVDPWHNWEAHY-EVL--PG-KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLR---EVIGGD---DARYSRVVFNEITKNAIRQAFNKPGELN--IDRVNAQQARRFMDRVVGYMVSPLLWKKI-A-----RGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTT-PSG-EALALQVTHQN------DKPFRPVNKEQTQAAVS----LLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEA---------GYITYMRTDSTNLSQDAVNMVRGYISDNFG--KKY---LP-------ESPNQYA--------REAIRPSD---------VN--VMAESL-----------KD------MEADAQKLYQLIWRQFVACQMTPAKYDSTTLTV--GAGDFRLKARGRIL--R----FDGWTKVMPAL-------EDRILPAVNKGDALTLVELTPAQHFT---KPPARFSEASLVKELE-----------------KRGIGRPSTYASIISTIQDRGYVRVEN-RRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENNLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKD--------------------------------------------------------------------------------------------------------------------------------
7 PsiBlast_PDB 89.7441% -62 - C4 -1ECL - TOP1_ECOLI A:[2-584] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GKALVIVESPAKAKTINKYLG-------------------S-------------D-------------------YVVKSSVGHIRDLP--DERGALVN-R--M-----G-----VD-PWH-NWEA-H--Y-EVL--PG-KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLR---EVIGGD---DARYSRVVFNEITKNAIRQAFNKPGELN--IDRVNAQQARRFMDRVVGYMVSPLLWKKI-A-----RGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGE-A-LALQVTHQN------DKPFRPVNKEQTQAAVS----LLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEA---------GYITYMRTDSTNLSQDAVNMVRGYISDNFG--KKYLPESP-------NQYA-----------HEAIRPSD---------VN--VMAESL-----------KD------MEADAQKLYQLIWRQFVACQMTPAKYDSTTLTV--GAGDFRLKARGRIL--R----FDGWTKVMPALR---------ILPAVNKGDALTLVELTPAQHFT---KPPARFSEASLVKELE-----------------KRGIGRPSTYASIISTIQDRGYVRVEN-RRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEE-----------------------------------------------------------------------------------------------------------------------------
10 PsiBlast_PDB 89.3342% -60 - C4 -2GAJ - TOP1_THEMA A:[9-586] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IVVESPAKAKTIKSILG-------------------N-------------E-------------------YEVFASMGHIIDLPKS---------K--F-----G-----VD-LEK-DFEP-E--F-AVI--KG-KEKVVEKLKDLAKKGE-LLIASDMDREGEAIAWHIARVTNTL-------GRKNRIVFSEITPRVIREAVKNPREID--MKKVRAQLARRILDRIVGYSLSPVLWRNF-K-----SNLSAGRVQSATLKLVCDREREILRFVPKKYHRITVN----------FDGLTAEID------VKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA-------PPEPFKTSTLQQEAYSKLGFSVSKTMMIAQQLYEGVET-KDGHIAFITYMRTDSTRVSDYAKEEARNLITEVFG--EEY---VG---------------------AHEAIRPTN---------VF--MTPEEA-----------GKY-----LNSDQKKLYELIWKRFLASQMKPSQYEETRFVL--RTKDGKYRFKGTVL--KKI--FDGYEKVW------KTERNTGEFP-FEEGESVKPVVVKIEEQET---KPKPRYTEGSLVKEME-----------------RLGIGRPSTYASTIKLLLNRGYIKKIR-GYLYPTIVGSVVMDYLEKKYSDVVSVSFTAEMEKDLDEVEQGKKTDKIVLREFYESFSSVFDRND----RI-VVDFPTNQKCS-CGKEMRLSFGKYGFYLKC----ECGKTRSV---------------------------------------------------------------------------------
9 PsiBlast_PDB 88.7042% -62 - C4 -2GAI - TOP1_THEMA A:[9-586] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IVVESPAKAKTIKSILG-------------------N-------------E-------------------YEVFASMGHIIDLPKS---------K--F-----G-----VD-LEK-DFEP-E--F-AVI--KG-KEKVVEKLKDLAKKGE-LLIASDMDREGEAIAWHIARVTNTL-------GRKNRIVFSEITPRVIREAVKNPREID--MKKVRAQLARRILDRIVGYSLSPVLWRNF-K-----SNLSAGRVQSATLKLVCDREREILRFVPKKYHRITVN----------FDGLTAEID------VKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA-------PPEPFKTSTLQQEAYSKLGFSVSKTMMIAQQLYEGVET-KDGHIAFITYMRTDSTRVSDYAKEEARNLITEVFG--EEY---VG---------------------AHEAIRPTN---------VF--MTPEEA-----------GKY-----LNSDQKKLYELIWKRFLASQMKPSQYEETRFVL--RTKDGKYRFKGTVL--KKI--FDGYEKVW------KTERNTGEFP-FEEGESVKPVVVKIEEQET---KPKPRYTEGSLVKEME-----------------RLGIGRPSTYASTIKLLLNRGYIKKIR-GYLYPTIVGSVVMDYLEKKYSDVVSVSFTAEMEKDLDEVEQGKKTDKIVLREFYESFSSVFDRND----RI-VVDFPTNQKCS-CGKEMRLSFGKYGFYLKC----ECGKTRSV---------------------------------------------------------------------------------
2 PsiBlast_PDB 88.6341% -63 - C4 -1CY2 TOP1_ECOLI A:[4-586] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GKALVIVESPAKAKTINKYLG-------------------S-------------D-------------------YVVKSSVGHIRDLP--DERGALVN-R--M-----G-----VD-PWH-NWEA-H--Y-EVL--PG-KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLR---EVIGGD---DARYSRVVFNEITKNAIRQAFNKPGELN--IDRVNAQQARRFMDRVVGYMVSPLLWKKI-A-----RGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGE-A-LALQVTHQN------DKPFRPVNKEQTQAAVS----LLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEA---------GYITYMRTDSTNLSQDAVNMVRGYISDNFG--KKYLPESP-------NQYA----------AHEAIRPSD---------VN--VMAESL-----------KD------MEADAQKLYQLIWRQFVACQMTPAKYDSTTLTV--GAGDFRLKARGRIL--R----FDGWTKVMPALR---------ILPAVNKGDALTLVELTPAQHFT---KPPARFSEASLVKELE-----------------KRGIGRPSTYASIISTIQDRGYVRVEN-RRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEE-----------------------------------------------------------------------------------------------------------------------------
31 HHSearch 88.6042% -53 - C4 -2GAI - TOP1_THEMA A:[7-601] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYIVVESPAKAKTIKSILG-------------------N-------------E-------------------YEVFASMGHIIDLPKS---------K--F-----G-----VD-LEK-DFEP-E--F-AVI--KG-KEKVVEKLKDLAKK-GELLIASDMDREGEAIAWHIA---RVTNTL----GRKNRIVFSEITPRVIREAVKNPREID--MKKVRAQLARRILDRIVGYSLSPVLWRNF-K-----SNLSAGRVQSATLKLVCDREREILRFVPKKYHRITVNFDG-LTA-E-ID--VK-----------EKKFFDAETLKEIQS-------IDELVVEEKKVSVKKFAPPEPFKTSTLQQEAYSKLGFSVSKTMMIAQQLYEGVETK-DGHIAFITYMRTDSTRVSDYAKEEARNLITEVFG--EEY---VG---------------------AHEAIRPTN---------VF--MTPEEA-----------GKY-----LNSDQKKLYELIWKRFLASQMKPSQYEETRFVL--RTKDGKYRFKGTVLKKI----FDGYEKVWKTERN-------TGEFPFEEGESVKPVVVKIEEQET---KPKPRYTEGSLVKEME-----------------RLGIGRPSTYASTIKLLLNRGYIKKIR-GYLYPTIVGSVVMDYLEKKYSDVVSVSFTAEMEKDLDEVEQGKKTDKIVLREFYESFSSVFDRNDRIV-----VDFPTNQKCS-CGKEMRLSFGKYGFYLKCE----CGKTRSVKN---------DEIAV----IDDGKIFL-----------------------------------------------------
5 PsiBlast_PDB 88.5141% -63 - C4 -1CY0 TOP1_ECOLI A:[4-574] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GKALVIVESPAKAKTINKYLG-------------------S-------------D-------------------YVVKSSVGHIRDLP--ALVN-----R--M-----G-----VD-PWH-NWEA-H--Y-EVL--PG-KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLR---EVIGGD---DARYSRVVFNEITKNAIRQAFNKPGELN--IDRVNAQQARRFMDRVVGYMVSPLLWKKI-A-----RGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGE-A-LALQVTHQN------DKPFRPVNKEQTQAAVS----LLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEA---------GYITYMRTDSTNLSQDAVNMVRGYISDNFG--KKYLPESP-------NQYASKEN---SQEAHEAIRPSD---------VN--VMAESL-----------KD------MEADAQKLYQLIWRQFVACQMTPAKYDSTTLTV--GAGDFRLKARGRIL--R----FDGWTKVM-------------ILPAVNKGDALTLVELTPAQHFT---KPPARFSEASLVKELE-----------------KRGIGRPSTYASIISTIQDRGYVRVEN-RRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDHFFSDFT-----------------------------------------------------------------------------------------------------------------------------------------
1 PsiBlast_PDB 88.3841% -64 - C4 -1CY1 TOP1_ECOLI A:[4-586] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GKALVIVESPAKAKTINKYLG-------------------S-------------D-------------------YVVKSSVGHIRDLP--RGALVN---R--M-----G-----VD-PWH-NWEA-H--Y-EVL--PG-KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLR---EVIGGD---DARYSRVVFNEITKNAIRQAFNKPGELN--IDRVNAQQARRFMDRVVGYMVSPLLWKKI-A-----RGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGE-A-LALQVTHQN------DKPFRPVNKEQTQAAVS----LLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEA---------GYITYMRTDSTNLSQDAVNMVRGYISDNFG--KKYLPESP-------NQYA---------EAHEAIRPSD---------VN--VMAESL-----------KD------MEADAQKLYQLIWRQFVACQMTPAKYDSTTLTV--GAGDFRLKARGRIL--R----FDGWTKVMPAL----------ILPAVNKGDALTLVELTPAQHFT---KPPARFSEASLVKELE-----------------KRGIGRPSTYASIISTIQDRGYVRVEN-RRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEE-----------------------------------------------------------------------------------------------------------------------------
57 Fugue 87.4642% -51 - C4 -2GAI - TOP1_THEMA A:[7-601] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KYIVVESPAKAKTIKSILG-------------------N-------------E-------------------YEVFASMGHIIDLPKS---------K--F-----G-----VD-LEK-DFEP-E--F-AVI--KG-KEKVVEKLKDLAKKGE-LLIASDMDREGEAIAWHIA---RVTNTL---GRKN-RIVFSEITPRVIREAVKNPREID--MKKVRAQLARRILDRIVGYSLSPVLWRNF-K-----SNLSAGRVQSATLKLVCDREREILRFVPKKYHRITVNF----------DGLTAEID------VKEKKFFDAETLKEIQ-------SIDELVVEEKKVSVKKFAPPEPFKTSTLQQEAYSKLGFSVSKTMMIAQQLYEGVETKD-GHIAFITYMRTDSTRVSDYAKEEARNLITEVFG--------------------------EEYVGAHEAIRPTN---------VF--MTPEEA-----------GKY-----LNSDQKKLYELIWKRFLASQMKPSQYEETRFVLRTKDGKYRFKGTVLKK--I----FDGYEKVWKTERNTG-------EFPFEEGESVKPVVVKIEEQET---KPKPRYTEGSLVKEME-----------------RLGIGRPSTYASTIKLLLNRGYIKKIR-GYLYPTIVGSVVMDYLEKKYSDVVSVSFTAEMEKDLDEVEQGKKTDKIVLREFYESFSSVFDRNDRIVVDFPTNQKCS------CGKEMRLSFGKYGFYLKC----ECGKTRSVKND---EIAVIDDGKIFL---------------------------------------------------------------
58 Fugue 82.1932% -37 - C4 -1GKU - RGYR_ARCFU B:[1-1054] ------------------------------------------------------------------------------------------------------AAAAAAAAAAAAAAAAAAASLCLFPEDFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTAHRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRELDESRDRYRRRQEFDLIKPALFIVESPTKARQISRFFGKPSVKVLDGAVVYEIPMQKY-------------V-------------------LMVTASIGHVVDLITN---------RGFH-----G-----VL-VNG-RFVP-V--Y-ASI--KDNSRSRIEALRKLAHDAEFVIVGTDPDTEGEKIAWDLK---NLLS-G---CGAVKRAEFHEVTRRAILEALESLRDVD--ENLVKAQVVRRIEDRWIGFVLSQKLWERF-NN----RNLSAGRAQTLVLGWIIDRFQESRERRKIAIVRDFDLVLE-HDE-E----------------------------------------EFDLTIKLVEEREELRTPLPPYTTETMLSDANRILKFSVKQTMQIAQELFEN---------GLITYHRTDSTRVSDVGQRIAKEYLGDDFV--G---------------------REWGESGAHECIRPTRPLTRDDVQRLI--QEGVLV-----------VEG-----LRWEHFALYDLIFRRFMASQCRPFKVVVKKYSI--EFDGKTAEEERIVR--A----EGRAYELYRAVWVKNELPTG-------------TFRVKAEVKSV---PKVLPFTQSEIIQMMK-----------------ERGIGRPSTYATIVDRLFMRNYVVEKY-GRMIPTKLGIDVFRFLVRRYAKFVSEDRTRDLESRMDAIERGELDYLKALEDMYAEIKSID--------------------------------------------------------------------------------------------------------------------------------------
62 Fugue 78.7230% -28 - C4 -4DDU RGYR_THEMA A:[2-1103] AVNSKYHHSCINCGGLNTDERNERGLPCEVCLPEDSPSDIYRALLERKTLKEYRFYHEFWNEYEDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEESRRRSERELTDTSRSLLIIVESPTKAETLSRFLGRASSRKERNIIVHEAVTGEGVILFTATRGHVYDLVTKGGIHGVEEENG-------------------K-------------F-------------------VPVYNSLKRCRDC-GY---------Q--F-----T-----ED-RDE-CPVC-S--S-KNI--DD-KTETLRALREISLEADEILVATDPDVEGEKISWDVT---QYLLPS---TRSLRRIEMHEITRYGFKKARESVRFVD--FNLVKAQIVRRVQDRWIGFELSGKLQKRFGR-----SNLSAGRVQSTVLGWIVEREEE----------------YK-KSE-K-DFTLLVLEN------GV---------NLEVEG----KIADDVVTVVELQEAEEEKNPLPPYTTSSALSEISQKLRLGVQEVMDILQDLFEK---------GFITYHRTDSTRISLEGQNVARTYLRKIGK--EDI---FM-------GRSWSTEGA------HEAIRPVK---------PIDARELEEM-----------IEEGLIADLTKKHLRVYELIFNRFLASQSAAVKVKKQIVTV--DVDG---------------------KRMGIEQIVEILRDGWNLFVPLTVSPRFEHRTYKIKEKKFYKKHTVPLFTQASIVEEMK-----------------KRGIGRPSTYAKIVEVLFRRGYVYEDKYKRVRPTRFGVMVYSYLKERYEKYVTEETTRRLEEIMDKVERGEEDYQATLRLLYEEIKSL-------MEE-----------------------------------------------------------------------------------------------------------------------------
32 HHSearch 77.8923% -35 * C4 *1I7D TOP3_ECOLI A:[1-620] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRLFIAEKPSLARAIADVLP-------------------KPHRKGDGFIECGNG-------------------QVVTWCIGHLLEQAQP---------DA-YDSRYAR-----WN-LADLPIVP-EK-W-QLQPRPS-VTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVL---DYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCVSALARARADWLYGINMTRAYTILG-RNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVT-PADER-FTAIWQPSEACEPYQDEEGRLLHRPLAEHVVN----RISGQPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYET--------HKLITFPRSDCRYLPEEHFAGRHAVMNAISVHAPDL---LPQPVVDPDIRNRC-WD-DKKVDAHHAIIPTA---------RS--S-A--------------I-N-----LTENEAKVYNLIARQYLMQFCPDAVFRKCVIEL--DIAKGKFVAKARFL--A----EAGWRTLLGSKERDE-ENDGTPLPVVAKGDELLCEKGEVVERQT---QPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKG-RYIHSTDAGKALFHSLPE---MATRPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTP-----VRQFRGIVAP----------------------------------------------------------------------------------------------------------------
34 HHSearch 71.9333% -40 - C4 -1GKU - RGYR_ARCFU B:[505-1053] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPALFIVESPTKARQISRFFG-------------------K-------------PSVKVLDGAVVYEIPMQKYVLMVTASIGHVVDLITN---------RG-FHGV--L-----VN-GRFVPVYA-S--IK-----DN-SRSRIEALRKLAHDAEFVIVGTDPDTEGEKIAWDLK---NLLSGC----GAVKRAEFHEVTRRAILEALESLRDVD--ENLVKAQVVRRIEDRWIGFVLSQKLWERF-NN----RNLSAGRAQTLVLGWIIDRFQESRERRKIAIVR------------D-FDLVLE---------------HDEE--------------EFDLTIKLVEEREELRTPLPPYTTETMLSDANRILKFSVKQTMQIAQELFEN---------GLITYHRTDSTRVSDVGQRIAKEYLGD------DF---V----------GRE-W---GESGAHECIRPTR---------PL--T-RDDVQRLIQEGVLVVEG------LRWEHFALYDLIFRRFMASQCRPFKVVVKKYSI--EFDGKTAEEERIVR--AEGRAYELYRAVWVK----------NELP---TGT-FRV---KAEVKSV---PKVLPFTQSEIIQMMK-----------------ERGIGRPSTYATIVDRLFMRNYVVEKY-GRMIPTKLGIDVFRFLVRRYAKFVSEDRTRDLESRMDAIERGELDYLKALEDMYAEIKSI---------------------------------------------------------------------------------------------------------------------------------------