@TOME V2.3
(Nov 2016)

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3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : Lmo1937: (2016-03-30 )
MAKPVVAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSDEPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDNPEMRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAVRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQDKRIAGYAHDAGRAIIIVVNKWDAINKDEKTINVWTEDIREQFQFLSYAPIVFVSAKTKQRLNNLFPLINQVSDNHSLRVQSSMLNDVISDAVAMNPSPMDKGKRLKIFYTTQVAVKPPTFVVFVNDPELMHFSYERFLENRIREAFPFEGTPIRVIARKRK

Atome Classification :

(27 SA) -----.........10........20........30...----------.....40.......-.50.....--...60.....--.-..70.----......-.---80...------------.....90........100...-....110........120----...-------...--.--..130--.....-----.-...140..-.....150.......160....--..----.170.--......180.......190.......200.......210.......220.......230.......240....--...250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360..--.....370.......380.......390.......400.......410.......-420--.......430....
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) -----MAKPVVAIVGRPNVGKSTIFNRIVGERVSIVEDV----------PGVTRDRIYNSAEW-LGKEFNII--DTGGIDLSDE--P-FLEQI----RAQAEI-A---IDEAD------------VIIFITNGREGVTDADEQVAK-ILYRS-NKPIVLAINK------VDN-------PEM--R--DQI----YDFYS-----L-GFGEPYPI-SGSHGLGLGDMLDAVRAHFPKE--EE----EEYPD--DTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGKVYESTEKY--SVLRAMRAIERSDVVLVVINAEEGIREQDKRIAGYAHDAGRAIIIVVNKWDAINKDEKTINVWTEDIREQFQFLSYAPIVFVSAKTKQRLNNLFPLINQVSDNHSLRVQSSMLNDVIS--DAVAMNPSPMDKGKRLKIFYTTQVAVKPPTFVVFVNDPELMHFSYERFLENRIRE-AFP--FEGTPIRVIARKRK
1 PsiBlast_PDB 97.7572%-125 - C1 -4DCS DER_BACSU A:[23-455] -------KPVVAIVGRPNVGKSTIFNRIAGERIS---------------------RIYSSAEW-LNYDFNLI--DTGG--------P-FLAQI----RQQAEI-A---MDEAD------------VIIFMVNGREGVTAADEEVAK-ILYRT-KKPVVLAVNK------L-----------M--R--ANI----YDFYS-----L-GFGEPYPI-SGTHGLGLGDLLDAVAEHFKNI--PE----TKYNE--EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN------DAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKY--SVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIM--DAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRD-AFG--FEGTPIKIFARAR-
2 PsiBlast_PDB 97.6072%-123 - C1 -4DCU DER_BACSU A:[23-454] -------KPVVAIVGRPNVGKSTIFNRIAGERIS---------------------RIYSSAEW-LNYDFNLI--DTGG--------P-FLAQI----RQQAEI-A---MDEAD------------VIIFMVNGREGVTAADEEVAK-ILYRT-KKPVVLAVNK------L------------------------YDFYS-----L-GFGEPYPI-SGTHGLGLGDLLDAVAEHFKNI--PE----TKYNE--EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN------DAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKY--SVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIM--DAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRD-AFG--FEGTPIKIFARA--
4 PsiBlast_PDB 97.1971%-123 - C1 -2HJG DER_BACSU A:[3-436] -------KPVVAIVGRPNVGKSTIFNRIAGERIS---------------------RIYSSAEW-LNYDFNLI--D-----------P-FLAQI----RQQAEI-A---MDEAD------------VIIFMVNGREGVTAADEEVAK-ILYRT-KKPVVLAVNK------LDN----------------NI----YDFYS-----L-GFGEPYPI-SGTHGLGLGDLLDAVAEHFKNI--PE----TKYNE--EVIQFCLIGRPNVGKSSLVNAMLGEERVIVS---------VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKY--SVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIM--DAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRD-AFG--FEGTPIKIFARARK
3 PsiBlast_PDB 97.1772%-124 - C1 -4DCV DER_BACSU A:[23-456] -------KPVVAIVGRPNVGKSTIFNRIAGERIS---------------------RIYSSAEW-LNYDFNLI--DTGG--------P-FLAQI----RQQAEI-A---MDEAD------------VIIFMVNGREGVTAADEEVAK-ILYRT-KKPVVLAVNK------L------------------------YDFYS-----L-GFGEPYPI-SGTHGLGLGDLLDAVAEHFKNI--PE----TKYNE--EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN------DAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKY--SVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIM--DAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRD-AFG--FEGTPIKIFARARK
55 HHSearch 79.2239%-117 - C1 -1MKY DER_THEMA A:[2-439] --------ATVLIVGRPNVGKSTLFNKLVK------------------------DPVQDTVEW-YGKTFKLV--DTCGVFDNPQ--DIISQKM----KEVTLN-M---IREAD------------LVLFVVDGKRGITKEDESLAD-FLRKS-TVDTILVANK------AEN-------LRE--FEREVK----PELYS-----L-GFGEPIPV-SAEHNINLDTMLETIIKKLEEK--GLDLESKPEIT--DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIP------VDDEVFIDGRKYVFVDTAGL----------EKY--SNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQ--KVLAFTNLPR----GLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFP--FEGSPIFLKFKRSR
6 PsiBlast_PDB 77.0939%-116 - C1 -1MKY DER_THEMA A:[4-431] ----------VLIVGRPNVGKSTLFNKLVK------------------------DPVQDTVEW-YGKTFKLV--DTCGVFDNPQ--D-IISQK----MKEVTLNM---IREAD------------LVLFVVDGKRGITKEDESLAD-FLRKS-TVDTILVANK------AEN-------LREFER--EVK----PELYS-----L-GFGEPIPV-SAEHNINLDTMLETIIKKLEEKGLDL----ESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIP------VDDEVFIDGRKYVFVDTAGL----------EKY--SNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQ--KVLAFTNLP----RGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFP--FEGSPI--------
21 PsiBlast_CBE 64.6481%-112 - C1 -4KYU DER_BACSU B:[3-163] -------KPVVAIVGRPNVGKSTIFNRIA---------------------------IYSSAEW--NYDFNLI--DTGGIDIGDE--P-FLAQI----RQQAEI-A---MDEAD------------VIIFMVNGREGVTAADEEVAK-ILYRT-KKPVVLAVNK------LDN-------TEM--R--ANI----YDFYS-----L-GFGEPYPI-SGTHGLGLGDLLDAVAEHF------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7 PsiBlast_PDB 63.3781% -96 - C1 -4KYU DER_BACSU A:[2-163] ------GKPVVAIVGRPNVGKSTIFNRIAGERI--------------------RDRIYSSAEW-LNYDFNLI--DTGGIDIGDE--P-FLAQI----RQQAEI-A---MDEAD------------VIIFMVNGREGVTAADEEVAK-ILYRT-KKPVVLAVNK------LDN-------TEM--R--ANI----YDFYS-----L-GFGEPYPI-SGTHGLGLGDLLDAVAEHF------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8 PsiBlast_PDB 57.3741% -91 - C1 -2DYK ? A:[4-161] ----------VVIVGRPNVGKSSLFNRLLKKRS---------------------DLKEGVVET-DRGRFLLV--DTGGL-WSGD--K-WEKKI----QEKVDR-A---LEDAE------------VVLFAVDGRAELTQADYEVAE-YLRRK-GKPVILVATK------VDD-------PKH--E--LYL----GPLYG-----L-GFGDPIPT-SSEHARGLEELLEAIWERLP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22 PsiBlast_CBE 56.9341% -92 - C1 -2DYK ? B:[4-161] ----------VVIVGRPNVGKSSLFNRLLKKRS---------------------DLKEGVVET-DRGRFLLV--DTGGL-WSGD--K-WEKKI----QEKVDR-A---LEDAE------------VVLFAVDGRAELTQADYEVAE-YLRRK-GKPVILVATK------VDD-------PKH--E--LYL----GPLYG-----L-GFGDPIPT-SSEHARGLEELLEAIWERLP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
66 HHSearch 56.7225%-103 - C1 -1MKY DER_THEMA A:[2-183] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATVLIVGRPNVGKSTLFNKLVK--------------DPVQDTVEWYGKTFKLVDTCGVFDNPQD--IISQK--MKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFE---RE----VKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEE--------------------------------------------------------------------------------------------
61 HHSearch 56.5641% -83 - C1 -2DYK ? A:[1-160] -------MHKVVIVGRPNVGKSSLFNRLLKKRS---------------------DLKEGVVET-DRGRFLLV--DTGGLWSGDK----WEKKI----QEKVDR-A---LEDAE------------VVLFAVDGRAELTQADYEVAE-YLRRK-GKPVILVATK------VDD-------PKH--E--LYL----GPLYG-----L-GFGDPIPT-SSEHARGLEELLEAIWERL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18 PsiBlast_PDB 55.3433% -89 - C1 -3IEV ERA_AQUAE A:[13-192] ----------VAIVGKPNVGKSTLLNNLLGTKVSIISPK----------AGTTRMRVLGVKN--IPNEAQIIFLDTPGI---YE--P-KKSDVLG--HSMVEI-AKQSLEEAD------------VILFMIDATEGWRPRDEEIYQ-NFIKPLNKPVIVVINK------IDKIGPAKNVLPL--I--DEI----HKKHP-------ELTEIVPI-SALKGANLDELVKTILKYLP-E--GE----PLFPE--DMI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16 PsiBlast_PDB 54.9033% -89 - C1 -3R9W ERA_AQUAE A:[12-191] ----------VAIVGKPNVGKSTLLNNLLGTKVSIISPK----------AGTTRMRVLGVKN--IPNEAQIIFLDTPGI---YE--P-KKSDVLG--HSMVEI-AKQSLEEAD------------VILFMIDATEGWRPRDEEIYQ-NFIKPLNKPVIVVINK------IDKIGPAKNVLPL--I--DEI----HKKHP-------ELTEIVPI-SALKGANLDELVKTILKYLP-E--GE----PLFPE--DMI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17 PsiBlast_PDB 54.8433% -87 - C1 -3R9X ERA_AQUAE A:[12-191] ----------VAIVGKPNVGKSTLLNNLLGTKVSIISPK----------AGTTRMRVLGVKN--IPNEAQIIFLDTPGI---YE--P-KKSDVLG--HSMVEI-AKQSLEEAD------------VILFMIDATEGWRPRDEEIYQ-NFIKPLNKPVIVVINK------IDKIGPAKNVLPL--I--DEI----HKKHP-------ELTEIVPI-SALKGANLDELVKTILKYLP-E--GE----PLFPE--DMI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
63 HHSearch 54.7235%-114 - C1 -3GEH MNME_NOSS1 A:[221-385] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LR--TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLD-------------------------QAANTADLVLLTIDAATGWTTGDQEIYEQV--KHRPLILVMNKIDLVEKQL--ITS----LE---YPENITQIVHTAAAQKQGIDSLETAILEIVQTG-------------------------------------------------------------------------------------------
64 HHSearch 54.6032%-101 - C1 -1XZP MNME_THEMA A:[239-406] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLN--RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN--DLVERL--GIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIK--NKRYLVVINKVDVVEKIN--EEEIK----NKLG--TDRHMVKISALKGEGLEKLEESIYRETQEI-------------------------------------------------------------------------------------------
74 HHSearch 54.2022% -92 - C1 -3PQC ENGB_THEMA A:[17-193] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DYPPP--LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSIN---FYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSE--RAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK---------------------------------------------------------------------------------------------
47 Fugue 54.1421% -54 - C1 -1XZP MNME_THEMA A:[27-482] SSVDKLMDTIVAVATPPGKGAIAIL-RLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIHENGED-VDEVVVVF--YKSPKSYTGE--D-MVEVMCHGGPLVVKK-L---LDLFLKSGARMAEPGEFTKRAFLNGKMDLTSAEAVRDL-IEAKS-ETSLKLSLRNLKGGLRDFV-------DSL--R--REL----IEVLAEIRVEL-DYPDEIETNTGEVVTRLERIKEKLTEELKKA--DA----GILLN--RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN--DLVERL--GIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKN--KRYLVVINKVDVVEKIN------EEEIKNKLG--TDRHMVKISALKGEGLEKLEESIYRETQEIFERGSDSLITN--L--RQKQLLENVKGHLEDAIKSLKEGMPVDMASIDLERALNLLDEVTGRSFREDLLDT-IFSNFCVGK----------
65 HHSearch 53.6430% -93 - C1 -3IEV ERA_AQUAE A:[10-183] -------VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPK----------AGTTRMRVLGVKNIPNEAQIIFL--DTPGIYEPKKSDV-LGHSM----VEIAKQ-S---LEEAD------------VILFMIDATEGWRPRDEEIYQNFIKPL-NKPVIVVINK------IDK-------IGP--A--KNVLPLIDEIHKK----HPELTEIVPI-SALKGANLDELVKTILKYLPEG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9 PsiBlast_PDB 51.4232%-100 - C1 -3GEH MNME_NOSS1 A:[225-409] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLD-------------------------QAANTADLVLLTIDAATGWTTGDQEI--YEQVKHRPLILVMNKIDLVEKQLITSLEYPENITQ---------IVHTAAAQKQGIDSLETAILEIVQTG--KVQAADMDLAINQRQAAALTQAKM-----------------------------------------------------------------
20 PsiBlast_PDB 43.0243% -38 - C1 -2GJA MNME_ECOLI A:[5-93] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR---EASDEVERI--GIERAWQEIEQADRVLFMVDG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25 PsiBlast_CBE 42.8543% -40 - C1 -2GJ9 MNME_ECOLI C:[5-93] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR---EASDEVERI--GIERAWQEIEQADRVLFMVDG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24 PsiBlast_CBE 42.7743% -37 - C1 -2GJ9 D:[5-93] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR---EASDEVERI--GIERAWQEIEQADRVLFMVDG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23 PsiBlast_CBE 42.6443% -38 - C1 -2GJA B:[5-93] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR---EASDEVERI--GIERAWQEIEQADRVLFMVDG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19 PsiBlast_PDB 42.0143% -35 - C1 -2GJ9 MNME_ECOLI A:[5-93] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR---EASDEVERI--GIERAWQEIEQADRVLFMVDG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26 PsiBlast_CBE 41.3143% -41 - C1 -2GJ9 MNME_ECOLI B:[5-93] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR---EASDEVERI--GIERAWQEIEQADRVLFMVDG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------