@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0695: (2015-12-02 )
MTQEEIDQMIEDWISNGFPDELKRLIPDEE
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.-........10...--.-..----..------20........30---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M-TQEEIDQMIEDWI--S-NG----FP------DELKRLIPDEE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
71.32
35%
-88
- C4 -
3LLR
-
DNM3A_HUMAN
A:
[131-152]
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P-----
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P
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
65.24
34%
-56
- C4 -
2OZB
1
PRP31_HUMAN
B:
[12-260]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EAAP
E
Y
R
V
I
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-
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--
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----
F
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-------
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GNSLDKCKNN
E
N
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I
LT
N
A
T
I
M
V
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A
S
T
TQ
G
Q
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C
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M
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M
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F
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A
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N
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S
I
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IG
A
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A
A
K
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M
G
V
A
GG
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T
N
L
S
K
MP
A
C
N
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M
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LGAQSVLPHTGYIYHS
D
I
V
Q
S
LPPDL
R
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V
A
A
K
C
T
L
A
A
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HESTEG
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Y
E
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E
22
HHSearch
63.73
24%
-149
- C4 -
2QSR
-
?
A:
[1045-1071]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
V
N
Y
E
E
L
Q
E
E
L
I
--
D
R
F
G
E---
Y
P
------
D
V
V
A
Y
L
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
62.62
13%
-93
- C4 -
1Z67
1
?
A:
[6-134]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L
F
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GDAG
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--
S
-
N
Q
----
Q
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GVD
T
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T
A
S
S
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I
I
D
A
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P
QGEVQANND
L
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M
E
L
L
K
G
K
L
F---------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
55.52
27%
-66
- C4 -
2NNW
-
?
A:
[8-369]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F
I
S
E
N
VR
G
I
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A
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ENGNLI
E
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Y
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TDK
P
E
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D
Q
L
L
K
GEIT
K
D
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E
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L
N
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GYD
E
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EH
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E
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GFS
A
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I
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NPEEFLGEN
W
F
E
E
Y
Y
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A
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IQEQSGA
R
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-
V
I
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--
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-
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H
----
F
P
-------
E
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E
L
L
P
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P
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Y
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A
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VGHRDNIN
E
E
V
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R
E
L
GLS
E
E
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A
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TM
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A
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A
P
N
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VG
A
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A
GG
L
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E
L
A
M
MP
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LGAEPKHGVIYQY
P
A
I
N
R
SPWWQR
G
K
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A
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A
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SGEYI
A
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A
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I
R
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K--------
31
Fugue
51.45
36%
-52
* C4 *
5CMZ
-
?
B:
[2-33]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
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T
W
E
E
W
D
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----
L
I
------
K
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E
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Q
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
50.00
17%
-93
- C4 -
2PAG
-
?
A:
[23-46]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
D
Q
L
V
E
-
I
E
E
Q
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--
F
-
I
N
----
I
P
------
F
V
F
K
E
F
L
L
T
V
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
45.71
22%
-97
- C4 -
2KRX
-
?
A:
[24-54]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
T
T
I
E
L
L
E
K
L
K
G
E
L
--
E
-
K
I
SFSD
L
P
------
L
E
L
Q
K
L
D
S
L
P
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
44.12
33%
-111
- C4 -
2HSA
-
OPR3_SOLLC
B:
[161-175]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
G
T
Y
E
I
S
Q
V
V
E
D
Y
R
--
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
42.66
25%
3
- C4 -
4OVY
9
?
A:
[1-305]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEPLPSWNDS
A
A
R
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A
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TEGSPRFVPVSER
I
V
T
F
D
N
DGTLWCEQPMY
V
Q
L
A
F
A
L
D
R
V
R
L
L
ADKHPEWRTEE
P
F
R
A
V
I
E
KD
L
P
A
L
A
K
LG
A
K
G
L
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L
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M
A
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HA
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D
D
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--
R
-
K
A
----
R
H
------
P
K
F
H
R
--
P
Y
T
E
CVY
Q
P
M
L
E
L
L
A
F
L
R
Q
H
E
F
K
T
F
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V
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GAGIEFMRPWAKEVYGIPPEQ
V
I
G
S
S
V
K
L
K
Y
E
L
R
DG
K
P
V
L
V
R
L
AELNFIDD
Q
A
G
K
P
V
G
I
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IGRRPV
M
A
V
G
N
S
DGD
Y
E
M
L
E
Y
V
TSGPAN
G
L
G
L
I
V
H
HTDAVR
E
F
A
Y
D
RQSPFG
R
L
D
R
A
L
T
D
A
TSKG
W
I
V
I
DMQRDWKVIFPES----------------------
33
Fugue
42.41
18%
-100
- C4 -
2GIC
2
NCAP_VSIVA
A:
[2-422]
------------------------------------------------------------------------------------------SV
T
V
K
R
IIDN
T
V
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V
P
K
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P
A
N
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D
P
V
E
Y
P
A
D
Y
F
R
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SKEIPLYINTTKS
L
S
D
L
R
G
Y
V
Y
Q
G
L
K
S
GNVS
I
I
H
V
N
S
Y
L
Y
G
A
L
KDI
R
G
K
L
D
K
D
W
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FGINIGKA
G
D
T
I
G
IFDL
V
S
L
K
A
L
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P
DGVSDASRTSADDKW
L
P
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L
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G
L
Y
R
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QMP
E
Y
R
K
K
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M
D
G
L
T
N
Q
C
KM
I
N
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Q
F
E
P
LVPEGRDIFDVWGND
S
N
Y
T
K
I
V
A
A
V
D
M
F
F
H
M
F
KKHECASFR
Y
G
T
I
V
S
RFKDC
A
A
L
A
T
F
G
H
L
C
K
I
T
G
M
-
S
T
E
D
V
T
T
W
I
---
L
--
N
-
R
E
----
V
A
------
D
E
M
V
Q
M
M
L
P
G
Q
EIDKADSYMPYLIDFGLSSKSPYSSVKN
P
A
F
H
F
W
G
Q
L
T
A
L
L
L
RSTRARNA
R
Q
P
D
DIE
Y
T
S
L
T
T
A
G
L
L
Y
A
Y
A
V
G
S
S
ADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRD
V
V
E
W
L
G
W
F
E
D
Q
NRKPT
P
D
M
M
Q
Y
A
K
R
A
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MSLQGLREKT
I
G
K
Y
A
K
S
E
FDK----------------------------------
30
Fugue
39.95
20%
-34
- C4 -
2NYF
-
PAL_NOSP7
A:
[24-566]
S
I
V
T
V
GD
R
N
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RHG
T
Q
V
R
L
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DN
A
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A
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Y
I
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AIS
R
E
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T
N
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W
F
L
KSGAGNKLS
L
A
D
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A
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L
L
R
A
N
S
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LYGASGIR
L
E
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N
A
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H
V
Y
EFGSIGD
L
V
P
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Y
I
T
G
A
L
I
GLDPSFTVDFD
G
K
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M
D
A
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A
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R
L
GL
P
K
L
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L
Q
PK
E
G
L
A
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MNGT
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A
A
N
C
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Y
D
A
K
V
L
L
A
L
T
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A
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A
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L
YGTNQSFH
P
F
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Q
C
K
PH
P
G
Q
L
W
T
A
D
Q
M
F
S
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KDSSLVREEQDR
Y
S
L
R
C
L
AQFI
G
P
I
V
D
G
V
S
E
I
T
K
Q
I
E
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E
M
N
SVTDNPLIDVENQ
V
S
Y
H
G
G
NFLG
Q
Y
V
G
V
T
M
D
R
L
R
Y
Y
I
G
L
L
A
K
H
-
I
D
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A
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L
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S
P
E
F
--
S
-
N
G
----
L
P
------
P
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G
N
S
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R
K
V
NMGL
K
G
L
Q
I
S
G
N
S
I
M
P
L
L
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F
Y
GNSLADRFPTHAEQFNQNINSQ
G
Y
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Q
N
Y
M
A
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KGHYDARTCLS
P
N
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A
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C
E
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GKPLTSVRPYIWNDNEQC
L
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GG
L
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A
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L--------------------------------------
19
HHSearch
39.50
18%
-98
- C4 -
1J5Y
-
NIAR_THEMA
A:
[167-183]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
T
M
E
R
I
M
R
E
L
K
--
K
-
K
G
----
F
L
------
I
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
38.46
27%
-104
- C4 -
2R14
-
?
A:
[156-170]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
E
T
D
E
I
P
G
I
V
E
D
Y
R
--
Q
-
A
A
----
Q
R
------
A
K
R
A
G
F
D
M
V
E
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
37.28
40%
-41
- C1 -
3LQV
-
SF3B1_HUMAN
P:
[23-32]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
S
D
E
E
L
D
A
M
F
P
E
G
Y
--
K
-
V
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
36.56
25%
-88
- C4 -
1ICP
-
OPR1_SOLLC
A:
[157-172]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
T
T
D
E
I
P
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I
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N
E
F
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--
V
-
A
A
----
R
N
------
A
I
E
A
G
F
D
G
V
E
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
35.61
27%
-48
- C4 -
3L5A
1
?
A:
[160-174]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
S
H
E
K
I
N
S
I
I
Q
Q
Y
R
--
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
34.07
20%
-88
- C4 -
1O94
-
DHTM_METME
A:
[139-153]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
D
L
S
D
I
A
Q
V
Q
Q
F
Y
V
--
D
-
A
A
----
K
R
------
S
R
D
A
G
F
D
I
V
Y
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
33.32
20%
-77
- C4 -
3KRU
-
?
A:
[133-147]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
S
V
E
E
I
K
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I
V
K
A
F
G
--
E
-
A
A
----
K
R
------
A
N
L
A
G
Y
D
V
V
E
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
32.92
19%
-71
- C4 -
3GR7
-
NAMA_GEOKA
A:
[134-149]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
T
K
A
D
I
E
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T
V
Q
A
F
Q
--
N
-
G
A
----
R
R
------
A
K
E
A
G
F
D
V
I
E
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------