@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu07200: (2016-06-11 )
MQATVHESKQSIMQRILTVFVFTLLIATVGLFIGQFVPVALMLPLSILEVAMIILAFWMRRRKAVGYAFVYTFAFVSGITLFPIVSHYASIAGAYVVLEAFGSTFVIFAVLGTIGAKMKKDLSFLWSFLLVAVLALAVVGIFNIFSPLNSAAMMAYSVIGTIVFSLYILYDLNQIKHRHITEDLIPVMALSLYLDFINLFINLLRFFGILSSDD
Atome Classification :
(20 SA)
------------------------------------------------......-----...10.------------------.......20------------.----........30.......----.40----.........50.....-..------.-----60....--------...--.---70........80.------.......90-----....----....100-..-----.....110---....--....120-.........130...--....140......--------.150......-.160-----.........170...--....180-........190..------.....200.......210..--------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------MQA
T
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I
I
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A
-
F
W
------
M
-----
R
R
R
KAV--------
G
Y
A
--
F
---
V
Y
T
F
A
F
VSGI
T
L
F
------
P
I
V
S
H
Y
A
S
I
-----
A
G
A
Y
----
V
V
L
E
A
FG-
S
T
-----
F
V
I
F
A
V
L
----
G
T
I
G
--
A
K
M
K
K
---
D
L
S
F
L
W
S
F
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L
V
A
V
L
A
--
L
A
V
V
G
I
F
N
I
F
S
P
L
--------
N
S
A
A
M
M
A
Y
S
V
-
I
G
-------
T
I
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F
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L
Y
I
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Y
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L
N
Q
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--
K
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I
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--
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A
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Y
L
------
D
F
I
N
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I
N
L
L
R
F
F
G
I
LSSDD--------------------------------------------
5
PsiBlast_PDB
82.34
100%
-244
- C5 -
4TKQ
4
YETJ_BACSU
A:
[9-215]
-----------------------------------------------------
H
-----
E
S
K
Q
S
I
------------------
M
Q
R
I
L
T
V
F
-------------
V
----
F
T
L
L
I
A
T
V
G
L
F
I
G
Q
F
V
P
----
V
A
-----
L
M
L
P
L
S
I
L
E
V
A
M
I
I
L
A
-
F
W
------
M
-----
R
R
R
K
A
V
--------
G
Y
A
--
F
---
V
Y
T
F
A
F
V
S
G
I
T
L
F
------
P
I
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H
Y
A
S
I
-----
A
G
A
Y
----
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V
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E
A
F
G
-
S
T
-----
F
V
I
F
A
V
L
----
G
T
I
G
--
A
K
M
K
K
---
D
L
S
F
L
W
S
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L
V
A
V
L
A
--
L
A
V
V
G
I
F
N
I
F
S
P
L
--------
N
S
A
A
M
M
A
Y
S
V
-
I
G
-------
T
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F
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Y
I
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Y
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L
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Q
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--
K
H
R
H
I
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--
E
D
L
I
P
V
M
A
L
S
L
Y
L
------
D
F
I
N
L
F
I
N
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L
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F
F
G
I
L
S
S
----------------------------------------------
16
Fugue
82.09
100%
-243
- C5 -
4PGR
-
YETJ_BACSU
A:
[6-212]
-----------------------------------------------------
H
-----
E
S
K
Q
S
I
------------------
M
Q
R
I
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T
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-------------
V
----
F
T
L
L
I
A
T
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L
F
I
G
Q
F
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P
----
V
A
-----
L
M
L
P
L
S
I
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E
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A
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I
I
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A
-
F
W
------
M
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R
R
R
K
A
V
--------
G
Y
A
--
F
---
V
Y
T
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A
F
V
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I
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------
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A
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A
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----
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E
A
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-
S
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-----
F
V
I
F
A
V
L
----
G
T
I
G
--
A
K
M
K
K
---
D
L
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F
L
W
S
F
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L
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A
V
L
A
--
L
A
V
V
G
I
F
N
I
F
S
P
L
--------
N
S
A
A
M
M
A
Y
S
V
-
I
G
-------
T
I
V
F
S
L
Y
I
L
Y
D
L
N
Q
I
--
K
H
R
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I
T
--
E
D
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I
P
V
M
A
L
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L
Y
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------
D
F
I
N
L
F
I
N
L
L
R
F
F
G
I
L
S
S
----------------------------------------------
1
PsiBlast_PDB
82.09
100%
-243
- C5 -
4PGR
-
YETJ_BACSU
A:
[6-212]
-----------------------------------------------------
H
-----
E
S
K
Q
S
I
------------------
M
Q
R
I
L
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-------------
V
----
F
T
L
L
I
A
T
V
G
L
F
I
G
Q
F
V
P
----
V
A
-----
L
M
L
P
L
S
I
L
E
V
A
M
I
I
L
A
-
F
W
------
M
-----
R
R
R
K
A
V
--------
G
Y
A
--
F
---
V
Y
T
F
A
F
V
S
G
I
T
L
F
------
P
I
V
S
H
Y
A
S
I
-----
A
G
A
Y
----
V
V
L
E
A
F
G
-
S
T
-----
F
V
I
F
A
V
L
----
G
T
I
G
--
A
K
M
K
K
---
D
L
S
F
L
W
S
F
L
L
V
A
V
L
A
--
L
A
V
V
G
I
F
N
I
F
S
P
L
--------
N
S
A
A
M
M
A
Y
S
V
-
I
G
-------
T
I
V
F
S
L
Y
I
L
Y
D
L
N
Q
I
--
K
H
R
H
I
T
--
E
D
L
I
P
V
M
A
L
S
L
Y
L
------
D
F
I
N
L
F
I
N
L
L
R
F
F
G
I
L
S
S
----------------------------------------------
4
PsiBlast_PDB
81.06
100%
-238
- C5 -
4PGV
-
YETJ_BACSU
A:
[6-212]
-----------------------------------------------------
H
-----
E
S
K
Q
S
I
------------------
M
Q
R
I
L
T
V
F
-------------
V
----
F
T
L
L
I
A
T
V
G
L
F
I
G
Q
F
V
P
----
V
A
-----
L
M
L
P
L
S
I
L
E
V
A
M
I
I
L
A
-
F
W
------
M
-----
R
R
R
K
A
V
--------
G
Y
A
--
F
---
V
Y
T
F
A
F
V
S
G
I
T
L
F
------
P
I
V
S
H
Y
A
S
I
-----
A
G
A
Y
----
V
V
L
E
A
F
G
-
S
T
-----
F
V
I
F
A
V
L
----
G
T
I
G
--
A
K
M
K
K
---
D
L
S
F
L
W
S
F
L
L
V
A
V
L
A
--
L
A
V
V
G
I
F
N
I
F
S
P
L
--------
N
S
A
A
M
M
A
Y
S
V
-
I
G
-------
T
I
V
F
S
L
Y
I
L
Y
D
L
N
Q
I
--
K
H
R
H
I
T
--
E
D
L
I
P
V
M
A
L
S
L
Y
L
------
D
F
I
N
L
F
I
N
L
L
R
F
F
G
I
L
S
S
----------------------------------------------
2
PsiBlast_PDB
80.76
100%
-250
- C5 -
4PGS
-
YETJ_BACSU
A:
[6-212]
-----------------------------------------------------
H
-----
E
S
K
Q
S
I
------------------
M
Q
R
I
L
T
V
F
-------------
V
----
F
T
L
L
I
A
T
V
G
L
F
I
G
Q
F
V
P
----
V
A
-----
L
M
L
P
L
S
I
L
E
V
A
M
I
I
L
A
-
F
W
------
M
-----
R
R
R
K
A
V
--------
G
Y
A
--
F
---
V
Y
T
F
A
F
V
S
G
I
T
L
F
------
P
I
V
S
H
Y
A
S
I
-----
A
G
A
Y
----
V
V
L
E
A
F
G
-
S
T
-----
F
V
I
F
A
V
L
----
G
T
I
G
--
A
K
M
K
K
---
D
L
S
F
L
W
S
F
L
L
V
A
V
L
A
--
L
A
V
V
G
I
F
N
I
F
S
P
L
--------
N
S
A
A
M
M
A
Y
S
V
-
I
G
-------
T
I
V
F
S
L
Y
I
L
Y
D
L
N
Q
I
--
K
H
R
H
I
T
--
E
D
L
I
P
V
M
A
L
S
L
Y
L
------
D
F
I
N
L
F
I
N
L
L
R
F
F
G
I
L
S
S
----------------------------------------------
6
HHSearch
80.11
96%
-243
- C5 -
4PGR
-
YETJ_BACSU
A:
[6-212]
-----------------------------------------------------
H
-----
E
S
K
Q
S
I
------------------
M
Q
R
I
L
T
V
F
-------------
V
----
F
T
L
L
I
A
T
V
G
L
F
I
G
Q
F
V
P
----
V
A
-----
L
M
L
P
L
-
S
I
L
E
V
A
M
I
I
L
A
F
W
------
M
-----
R
R
R
K
A
V
--------
G
Y
A
--
F
---
V
Y
T
F
A
F
V
S
G
I
T
L
F
------
P
I
V
S
H
Y
A
S
I
-----
A
G
A
Y
----
V
V
L
E
A
F
G
-
S
T
-----
F
V
I
F
A
V
L
----
G
T
I
G
--
A
K
M
K
K
---
D
L
S
F
L
W
S
F
L
L
V
A
V
L
A
--
L
A
V
V
G
I
F
N
I
F
S
P
L
--------
N
S
A
A
M
M
A
Y
S
V
-
I
G
-------
T
I
V
F
S
L
Y
I
L
Y
D
L
N
Q
I
--
K
H
R
H
I
T
--
E
D
L
I
P
V
M
A
L
S
L
Y
L
------
D
F
I
N
L
F
I
N
L
L
R
F
F
G
I
L
S
S
----------------------------------------------
3
PsiBlast_PDB
73.42
100%
-248
- C- -
4PGU
-
YETJ_BACSU
A:
[6-212]
-----------------------------------------------------
H
-----
E
S
K
Q
S
I
------------------
M
Q
R
I
L
T
V
F
-------------
V
----
F
T
L
L
I
A
T
V
G
L
F
I
G
Q
F
V
P
----
V
A
-----
L
M
L
P
L
S
I
L
E
V
A
M
I
I
L
A
-
F
W
------
M
-----
R
R
R
K
A
V
--------
G
Y
A
--
F
---
V
Y
T
F
A
F
V
S
G
I
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L
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------
P
I
V
S
H
Y
A
S
I
-----
A
G
A
Y
----
V
V
L
E
A
F
G
-
S
T
-----
F
V
I
F
A
V
L
----
G
T
I
G
--
A
K
M
K
K
---
D
L
S
F
L
W
S
F
L
L
V
A
V
L
A
--
L
A
V
V
G
I
F
N
I
F
S
P
L
--------
N
S
A
A
M
M
A
Y
S
V
-
I
G
-------
T
I
V
F
S
L
Y
I
L
Y
D
L
N
Q
I
--
K
H
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H
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T
--
E
D
L
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P
V
M
A
L
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L
Y
L
------
D
F
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N
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F
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N
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L
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F
F
G
I
L
S
S
----------------------------------------------
17
Fugue
45.33
19%
-211
- C3 -
4N5H
5
?
X:
[1-315]
MADEEAMLAKVQASWAQTAARDKARYADERVPEDVHWETEYRYEQSAD
P
Q
Q
T
L
N
LYYPA
K
R
R
N
A
T
------------------
M
P
T
V
I
D
I
H
GGGWFYGDRNLNR
N
----
Y
C
R
Y
L
A
S
Q
G
-
Y
A
V
M
G
M
G
----
Y
R
-----
L
L
P
D
V
D
L
R
G
Q
I
Q
D
I
F
A
-
S
-------
L
-----
R
W
L
S
H
F
--------
G
P
Q
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F
---
D
L
D
H
V
L
L
T
G
D
S
---------
A
G
G
H
L
A
S
L
-----
V
A
C
I
QQSA
E
L
Q
E
L
F
G
-
V
S
RVNFN
F
T
L
V
A
L
V
----
C
P
V
A
EP
S
K
L
P
E
AAG
D
M
S
D
M
A
A
F
Y
L
D
K
L
S
G
GD
Q
A
L
V
D
H
L
N
F
S
Q
V
V
--------
K
G
L
D
L
P
P
F
M
L
-
I
G
GQNDSFY
L
Q
S
Q
A
L
L
K
V
F
D
A
N
H
V
TY
T
T
K
L
W
P
--
A
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A
G
P
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L
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H
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F
N
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QHWEWP
E
S
I
E
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L
E
M
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F
D
A
L
S
K
Q
Q
DQAEENE-------------------------------------
22
Fugue
35.71
14%
-157
- C4 -
4HYF
3
TNKS2_HUMAN
A:
[14-240]
-------------------------------GTENLY
F
Q
S
M
L
NTSGS
G
T
I
L
I
D
L
-----
S
P
D
D
K
E
------------------
F
Q
S
V
E
E
E
M
-------------
Q
----
S
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V
R
E
H
R
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G
G
H
A
G
G
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----
R
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N
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K
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C
N
K
K
L
W
E
R
-
Y
T
------
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-----
R
R
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E
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S
E
E
N
HNHAN
E
R
M
--
L
---
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H
G
S
P
F
V
N
A
I
I
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------
G
F
D
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A
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I
GGMFG
A
G
I
Y
----
F
A
E
N
S
S
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-
S
N
-----
Q
Y
V
Y
G
I
G
----
G
G
T
G
--
C
P
V
H
K
---
D
R
S
-
C
Y
I
C
H
R
Q
L
L
F
C
--
R
V
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F
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A
M
K
M
AHSPP
G
H
H
S
V
T
G
R
P
S
-
V
N
-------
G
L
A
L
A
E
Y
V
I
Y
R
G
E
Q
----------------------------------
A
Y
P
E
Y
L
I
T
Y
Q
I
M
R
P
E
G
--------------------------------------------
23
Fugue
33.56
20%
-319
* C5 *
1IIJ
-
A:
[1-35]
--------------------------------------------------
E
Q
R
A
-----
S
P
V
T
F
I
------------------
I
A
T
V
V
G
V
L
-------------
L
----
F
L
I
L
V
V
V
V
G
I
L
I
K
R
R
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
32.93
16%
-152
- C2 -
3R0R
4
?
A:
[33-226]
------------------------------------------HPFTNG
I
F
N
T
R
L
-----
S
R
T
F
G
Y
------------------
T
I
K
R
T
T
V
K
-------------
T
----
P
S
W
A
V
D
M
M
R
F
N
I
N
D
F
L
P
----
P
G
GGSNP
R
S
V
P
F
E
Y
Y
R
I
R
K
V
K
V
E
-
F
W
P
CSPIT
Q
-----
G
D
R
G
V
G
--------
S
S
A
--
V
---
I
L
D
D
N
F
V
T
K
A
T
A
L
------
T
Y
-
D
P
Y
V
N
Y
-----
S
S
R
H
----
T
I
T
Q
P
F
S
-
Y
H
-----
S
R
Y
F
T
P
K
P
VLD
S
T
I
D
--
Y
F
Q
P
N
---
N
K
R
N
Q
L
W
L
R
L
Q
T
A
G
N
--
V
D
H
V
G
L
G
T
A
F
E
----------
N
S
I
----
Y
D
Q
-
E
Y
-------
N
I
R
V
T
M
Y
V
Q
F
R
E
F
N
L
--
K
D
P
P
L
--------------------------------------------------------------------------------------
12
HHSearch
32.60
26%
-299
- C5 -
1PFI
-
CAPSD_BPPF1
A:
[17-39]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
---
D
M
K
A
I
G
G
Y
I
V
G
A
L
V
I
--
L
A
V
A
G
L
I
----------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
31.24
11%
-184
* C4 *
4RFS
-
?
S:
[3-200]
------------------------------------------------------------
R
H
K
T
F
------------------
R
L
V
V
D
A
L
L
-------------
M
----
A
I
V
L
L
Q
N
L
V
P
F
L
G
Y
I
P
F
----
G
P
-----
F
--
S
M
T
L
I
G
L
T
V
I
V
A
G
-
S
A
------
L
-----
G
P
R
D
G
L
--------
L
I
G
--
G
---
F
W
G
L
I
T
F
V
R
A
F
T
W
------
P
-----
S
S
P
-----
V
A
P
L
----
I
F
T
N
P
L
I
-
S
I
-----
L
P
R
L
L
M
G
----
L
V
A
G
--
S
L
Y
L
W
---
G
R
H
R
Q
W
S
M
R
Q
A
M
Q
V
A
--
A
G
C
A
A
L
T
N
T
V
L
V
L
--------
G
L
V
F
L
F
Y
Q
T
P
--
A
-------
V
L
G
Y
V
L
M
I
S
L
F
T
N
G
I
--
P
E
L
I
L
D
--
V
L
V
A
P
L
I
A
M
P
L
R
R
------
Q
W
E
R
L
K
P
Q
--------------------------------------------------------
25
Fugue
30.38
12%
-183
* C3 *
4KTW
2
?
A:
[1-160]
----------------------------------------------------------------------------------------------------------------------------
M
K
----
K
I
-----
L
A
I
N
F
S
T
A
S
----------------------
K
K
G
E
G
T
--------
G
Y
A
--
F
---
R
K
D
G
Q
V
Y
V
G
S
I
K
A
YNPKKT
A
W
E
R
T
F
D
I
V
-----
N
A
I
K
----
D
I
I
D
E
F
D
L
K
G
-----
Y
H
L
A
I
E
T
----
P
I
M
G
--
R
N
R
K
H
---
S
I
T
L
A
---
N
C
N
G
Y
F
I
--
G
A
I
D
G
L
V
N
G
Y
T
F
I
--------
D
N
S
K
W
C
S
Y
H
L
-
I
S
GK
R
E
Q
--
R
K
E
E
S
L
E
L
L
K
A
T
G
L
V
--
D
S
N
C
K
D
--
D
N
I
A
D
A
Y
N
I
L
T
Y
C
------
E
H
L
-------------------------------------------------------------
18
Fugue
28.96
11%
-200
- C3 -
1TZB
6
PGMI_PYRAE
A:
[2-302]
----------------------------------------------S
Q
L
L
Q
D
Y
L
-----
N
W
E
N
Y
I
LR
R
V
D
F
P
T
S
Y
V
V
EG
E
V
V
R
I
E
A
M
P
R
L
Y
-------------
I
S
G
M
G
G
S
G
V
V
A
D
L
I
R
D
F
S
L
T
W
N
WE
V
E
V
I
-----
A
V
K
D
Y
F
L
K
A
R
D
G
L
L
I
A
-
V
S
------
Y
SGNT
I
E
T
L
Y
T
V
--------
E
Y
A
--
K
R
R
R
I
P
A
V
A
I
T
T
G
G
R
L
A
QMG
V
--
P
T
V
I
V
P
K
A
S
-----
A
P
R
A
----
A
L
P
Q
L
L
T
-
A
A
-----
L
H
V
V
A
K
V
----
Y
G
I
D
--
V
K
I
P
E
---
G
L
E
P
P
N
E
A
L
I
H
K
L
V
E
--
E
F
Q
K
R
P
T
I
I
A
A
E
S
--------
M
R
G
V
A
Y
R
V
K
N
E
F
N
-------
E
N
A
K
I
E
P
S
V
E
I
L
P
E
A
--
H
H
N
W
I
E
GS
E
R
A
V
V
A
L
T
S
P
H
I
P
------
K
E
H
Q
E
R
V
K
A
T
V
E
I
V
G
G
S
I
Y
A
V
EMH
P
K
G
V
L
S
F
L
R
D
V
G
I
A
S
V
K
L
A
E
I
R
GVNPLAT
P
R
I
D
A
L
K
R
R
L
Q
7
HHSearch
22.23
0%
10
- C5 -
1F9F
-
VE2_HPV18
A:
[54-68]
-------------------------------------------------
T
Y
H
S
E
-----
T
Q
R
T
K
F
------------------
L
N
T
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
21.31
0%
-
- C5 -
4G0D
1
?
W:
[11-23]
----------------------------------------------------
D
L
-----
Q
F
A
E
R
Y
------------------
L
R
S
Y
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
21.13
27%
-356
- C5 -
1WAZ
-
?
A:
[52-66]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
F
I
G
L
----
T
I
Y
A
--
I
Q
R
K
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
21.07
13%
-369
- C1 -
4KXQ
-
?
B:
[12-26]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
P
N
R
Y
I
F
H
G
A
E
V
Y
S
------
D
---------------------------------------------------------------
10
HHSearch
20.66
13%
-5
- C5 -
1R8H
1
VE2_HPV6A
A:
[55-69]
-------------------------------------------------
T
Y
H
S
E
-----
E
Q
R
Q
Q
F
------------------
L
N
V
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------