@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu18080: (2016-06-28 )
MQNPSKAEIKEILQRSKRIAVVGLSDRPDRTSHMVSKAMQDAGYEIIPVNPTIDEALGVKAVSSLKEIDGPIDIVNVFRRSEQLPGVAEEFLETDAPVFWAQQGLVNEEAYQMLKEKGRTVIMDLCIKVAHAVTK
Atome Classification :
(20 SA)
.........10........20........30........40.-..--.-....50..--.--.....60........70--.........80........90........100-.-.---------.....110.......120.......130...-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MQNP
S
K
A
E
I
K
E
I
L
Q
RSK
R
I
A
V
V
GLSDRPD
R
T
S
H
M
V
S
K
A
M
Q
DA-G
Y
--
E
-
I
I
PVNPT
I
--
D
--
E
A
L
G
V
K
A
V
S
S
L
K
EIDG---
P
I
D
I
V
N
V
F
R
R
S
EQLP
G
V
A
E
E
F
L
ETDAP
V
F
W
A
Q-Q-G---------LV
N
E
E
A
Y
Q
M
L
K
EKGR
T
V
I
M
D
L
C
I
K
V
A
H
A
VTK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
91.01
33%
-133
- C3 -
2D59
-
?
A:
[12-140]
-----
D
E
D
I
R
E
I
L
T
R
Y
K
K
I
A
L
V
G
A
S
P
K
P
E
R
D
A
N
I
V
M
K
Y
L
L
E
H
-
G
Y
--
D
-
V
Y
P
V
N
P
K
Y
--
E
--
E
V
L
G
R
K
C
Y
P
S
V
L
D
I
P
D
---
K
I
E
V
V
D
L
F
V
K
P
K
L
T
M
E
Y
V
E
Q
A
I
K
K
G
A
K
V
V
W
F
Q
-
Y
-
N
---------
T
Y
N
R
E
A
S
K
K
A
D
E
A
G
L
I
I
V
A
N
R
C
M
M
R
E
H
E
R
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
85.91
34%
-36
- C3 -
1IUK
-
?
A:
[1-136]
---
M
N
D
Q
E
L
R
A
Y
L
S
Q
A
K
T
I
A
V
L
G
A
H
K
D
P
S
R
P
A
H
Y
V
P
R
Y
L
R
E
Q
-
G
Y
--
R
-
V
L
P
V
N
P
R
F
QG
E
--
E
L
F
G
E
E
A
V
A
S
L
L
D
L
K
E
---
P
V
D
I
L
D
V
F
R
P
P
S
A
L
M
D
H
L
P
E
V
L
A
L
R
P
G
L
V
W
L
Q
-
S
-
G
---------
I
R
H
P
E
F
E
K
A
L
K
E
A
G
I
P
V
V
A
D
R
C
L
M
V
E
H
K
R
L
F
RG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
85.33
32%
-159
- C3 -
3QA9
-
?
A:
[11-134]
-------
D
I
R
E
I
L
T
R
Y
K
K
I
A
L
V
G
A
S
P
K
P
E
R
D
A
N
I
V
M
K
Y
L
L
E
H
-
G
Y
--
D
-
V
Y
P
V
N
P
N
Y
--
E
--
E
V
L
G
R
K
C
Y
P
S
V
L
D
I
P
D
---
K
I
E
V
V
D
L
F
V
D
P
A
K
A
W
R
F
V
V
Y
A
I
K
K
G
A
K
V
V
W
F
Q
-
Y
-
N
---------
T
Y
Y
P
L
A
A
R
Q
A
K
E
A
G
L
I
I
V
A
N
R
C
M
M
R
E
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
84.71
33%
-150
- C3 -
2D5A
1
?
A:
[14-137]
-------
D
I
R
E
I
L
T
R
Y
K
K
I
A
L
V
G
A
S
P
K
P
E
R
D
A
N
I
V
M
K
Y
L
L
E
H
-
G
Y
--
D
-
V
Y
P
V
N
P
K
Y
--
E
--
E
V
L
G
R
K
C
Y
P
S
V
L
D
I
P
D
---
K
I
E
V
V
D
L
F
V
K
P
K
L
T
M
E
Y
V
E
Q
A
I
K
K
G
A
K
V
V
W
F
Q
-
Y
-
N
---------
T
Y
N
R
E
A
S
K
K
A
D
E
A
G
L
I
I
V
A
N
R
C
M
M
R
E
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
84.67
33%
-144
- C3 -
2E6U
5
?
X:
[14-137]
-------
D
I
R
E
I
L
T
R
Y
K
K
I
A
L
V
G
A
S
P
K
P
E
R
D
A
N
I
V
M
K
Y
L
L
E
H
-
G
Y
--
D
-
V
Y
P
V
N
P
K
Y
--
E
--
E
V
L
G
R
K
C
Y
P
S
V
L
D
I
P
D
---
K
I
E
V
V
D
L
F
V
K
P
K
L
T
M
E
Y
V
E
Q
A
I
K
K
G
A
K
V
V
W
F
Q
-
Y
-
N
---------
T
Y
N
R
E
A
S
K
K
A
D
E
A
G
L
I
I
V
A
N
R
C
M
M
R
E
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
84.30
39%
-50
- C3 -
2DUW
-
?
A:
[6-133]
--------
I
A
G
I
L
T
S
T
R
T
I
A
L
V
G
A
S
D
K
P
D
R
P
S
Y
R
V
M
K
Y
L
L
D
Q
-
G
Y
--
H
-
V
I
P
V
S
P
K
V
--
A
GK
T
L
L
G
Q
Q
G
Y
A
T
L
A
D
V
P
E
---
K
V
D
M
V
D
V
F
R
N
S
E
A
A
W
G
V
A
Q
E
A
I
A
I
G
A
K
T
L
W
L
Q
-
L
-
G
---------
V
I
N
E
Q
A
A
V
L
A
R
E
A
G
L
S
V
V
M
D
R
C
P
A
I
E
L
P
R
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
84.27
33%
-137
- C3 -
2D59
-
?
A:
[14-137]
-------
D
I
R
E
I
L
T
R
Y
K
K
I
A
L
V
G
A
S
P
K
P
E
R
D
A
N
I
V
M
K
Y
L
L
E
H
-
G
Y
--
D
-
V
Y
P
V
N
P
K
Y
--
E
--
E
V
L
G
R
K
C
Y
P
S
V
L
D
I
P
D
---
K
I
E
V
V
D
L
F
V
K
P
K
L
T
M
E
Y
V
E
Q
A
I
K
K
G
A
K
V
V
W
F
Q
-
Y
-
N
---------
T
Y
N
R
E
A
S
K
K
A
D
E
A
G
L
I
I
V
A
N
R
C
M
M
R
E
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
83.63
35%
-34
- C3 -
1IUK
-
?
A:
[5-130]
-------
E
L
R
A
Y
L
S
Q
A
K
T
I
A
V
L
G
A
H
K
D
P
S
R
P
A
H
Y
V
P
R
Y
L
R
E
Q
-
G
Y
--
R
-
V
L
P
V
N
P
R
F
QG
E
--
E
L
F
G
E
E
A
V
A
S
L
L
D
L
K
E
---
P
V
D
I
L
D
V
F
R
P
P
S
A
L
M
D
H
L
P
E
V
L
A
L
R
P
G
L
V
W
L
Q
-
S
-
G
---------
I
R
H
P
E
F
E
K
A
L
K
E
A
G
I
P
V
V
A
D
R
C
L
M
V
E
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
83.30
35%
-38
- C3 -
1IUK
-
?
A:
[6-134]
--------
L
R
A
Y
L
S
Q
A
K
T
I
A
V
L
G
A
H
K
D
P
S
R
P
A
H
Y
V
P
R
Y
L
R
E
Q
-
G
Y
--
R
-
V
L
P
V
N
P
R
F
--
Q
GE
E
L
F
G
E
E
A
V
A
S
L
L
D
L
K
E
---
P
V
D
I
L
D
V
F
R
P
P
S
A
L
M
D
H
L
P
E
V
L
A
L
R
P
G
L
V
W
L
Q
-
S
-
G
---------
I
R
H
P
E
F
E
K
A
L
K
E
A
G
I
P
V
V
A
D
R
C
L
M
V
E
H
K
R
L
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
83.17
35%
-32
- C3 -
1IUL
-
?
A:
[5-130]
-------
E
L
R
A
Y
L
S
Q
A
K
T
I
A
V
L
G
A
H
K
D
P
S
R
P
A
H
Y
V
P
R
Y
L
R
E
Q
-
G
Y
--
R
-
V
L
P
V
N
P
R
F
QG
E
--
E
L
F
G
E
E
A
V
A
S
L
L
D
L
K
E
---
P
V
D
I
L
D
V
F
R
P
P
S
A
L
M
D
H
L
P
E
V
L
A
L
R
P
G
L
V
W
L
Q
-
S
-
G
---------
I
R
H
P
E
F
E
K
A
L
K
E
A
G
I
P
V
V
A
D
R
C
L
M
V
E
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
81.57
40%
-43
- C3 -
2DUW
-
?
A:
[5-125]
-------
D
I
A
G
I
L
T
S
T
R
T
I
A
L
V
G
A
S
D
K
P
D
R
P
S
Y
R
V
M
K
Y
L
L
D
Q
-
G
Y
--
H
-
V
I
P
V
S
P
K
V
AG
K
--
T
L
L
G
Q
Q
G
Y
A
T
L
A
D
V
P
E
---
K
V
D
M
V
D
V
F
R
N
S
E
A
A
W
G
V
A
Q
E
A
I
A
I
G
A
K
T
L
W
L
Q
-
L
-
G
---------
V
I
N
E
Q
A
A
V
L
A
R
E
A
G
L
S
V
V
M
D
R
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
80.10
31%
-157
- C3 -
3Q9N
1
?
A:
[12-135]
-------
D
I
R
E
I
L
T
R
Y
K
K
I
A
L
V
G
A
S
P
K
P
E
R
D
A
N
I
V
M
K
Y
L
L
E
H
-
G
Y
--
D
-
V
Y
P
V
N
P
N
Y
--
E
--
E
V
L
G
R
K
C
Y
P
S
V
L
D
I
P
D
---
K
V
E
V
V
D
L
F
V
N
P
A
K
A
W
R
F
V
V
Y
A
I
K
K
G
A
K
V
V
W
F
Q
-
Y
-
N
---------
T
Y
Y
P
L
A
A
R
Q
A
---
G
P
I
I
V
A
N
R
C
M
M
R
E
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
79.38
30%
-170
- C3 -
3Q9U
1
?
A:
[13-135]
--------
I
R
E
T
L
T
R
Y
K
K
I
A
L
V
G
A
S
P
K
P
E
R
D
A
N
I
V
M
K
Y
L
L
E
H
-
G
Y
--
D
-
V
Y
P
V
N
P
N
Y
--
E
--
E
V
L
G
R
K
C
Y
P
S
V
L
D
I
P
D
---
K
I
E
V
V
D
L
F
V
N
P
A
K
A
W
R
F
V
A
Y
A
I
K
K
G
A
K
V
V
W
F
Q
-
Y
-
N
---------
T
Y
Y
P
L
A
A
R
Q
A
---
G
L
I
I
V
A
N
R
C
M
M
R
E
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
79.00
29%
-179
- C3 -
1Y81
8
?
A:
[14-129]
---------------
F
R
K
I
A
L
V
G
A
S
K
N
P
A
K
Y
G
N
I
I
L
K
D
L
L
S
K
-
G
F
--
E
-
V
L
P
V
N
P
N
Y
--
D
--
E
I
E
G
L
K
C
Y
R
S
V
R
E
L
P
K
---
D
V
D
V
I
V
F
V
V
P
P
K
V
G
L
Q
V
A
K
E
A
V
E
A
G
F
K
K
L
W
F
Q
-
P
-
G
---------
A
E
S
E
E
I
R
R
F
L
E
K
A
G
V
E
Y
S
F
G
R
C
I
M
V
E
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
77.99
31%
-159
- C3 -
3Q9N
1
?
B:
[12-135]
-------
D
I
R
E
I
L
T
R
Y
K
K
I
A
L
V
G
A
S
P
K
P
E
R
D
A
N
I
V
M
K
Y
L
L
E
H
-
G
Y
--
D
-
V
Y
P
V
N
P
N
Y
--
E
--
E
V
L
G
R
K
C
Y
P
S
V
L
D
I
P
D
---
K
V
E
V
V
D
L
F
V
N
P
A
K
A
W
R
F
V
V
Y
A
I
K
K
G
A
K
V
V
W
F
Q
-
Y
-
N
---------
T
Y
Y
P
L
A
A
-----
A
G
P
I
I
V
A
N
R
C
M
M
R
E
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
77.36
30%
-182
- C3 -
1Y81
8
?
A:
[15-127]
----------------
R
K
I
A
L
V
G
A
S
K
N
P
A
K
Y
G
N
I
I
L
K
D
L
L
S
K
-
G
F
--
E
-
V
L
P
V
N
P
N
Y
--
D
--
E
I
E
G
L
K
C
Y
R
S
V
R
E
L
P
K
---
D
V
D
V
I
V
F
V
V
P
P
K
V
G
L
Q
V
A
K
E
A
V
E
A
G
F
K
K
L
W
F
Q
-
P
-
G
---------
A
E
S
E
E
I
R
R
F
L
E
K
A
G
V
E
Y
S
F
G
R
C
I
M
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
60.65
23%
-14
- C3 -
2CSU
-
?
A:
[2-154]
--------
L
D
Y
F
F
-
N
P
K
G
I
A
V
I
G
A
S
N
D
P
K
K
L
G
Y
E
V
F
K
N
L
K
E
Y
K
K
G
--
K
-
V
Y
P
V
N
I
K
E
--
E
--
E
V
Q
G
V
K
A
Y
K
S
V
K
D
I
P
D
---
E
I
D
L
A
I
I
V
V
P
K
R
F
V
K
D
T
L
I
Q
C
G
E
K
G
V
K
G
V
V
I
I
T
A
-
G
FGETG
E
E
G
K
R
E
E
K
E
L
V
E
I
A
H
K
Y
G
M
R
I
I
G
P
N
C
V
G
I
M
N
T
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
60.56
21%
-111
- C3 -
3FF4
1
?
A:
[3-119]
--------------
A
M
K
K
T
L
I
L
G
A
T
P
E
T
N
R
Y
A
Y
L
A
A
E
R
L
K
S
H
-
G
H
--
E
-
F
I
P
V
G
R
K
K
--
G
--
E
V
L
G
K
T
I
I
N
E
R
P
V
I
-
E
---
G
V
D
T
V
T
L
Y
I
N
P
Q
N
Q
L
S
E
Y
N
Y
I
L
S
L
K
P
K
R
V
I
F
N
-
P
-
G
---------
T
E
N
E
E
L
E
E
I
L
S
E
N
G
I
E
P
V
I
G
-
C
T
L
V
M
L
S
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
59.26
23%
-26
- C3 -
4YB8
5
?
A:
[1-464]
M
N
D
L
------
E
R
L
F
N
P
S
A
I
A
V
V
G
A
S
K
D
P
S
K
I
G
S
Q
I
L
R
N
L
L
S
Y
-
G
F
K
G
K
-
V
Y
P
I
N
P
T
A
--
D
--
E
L
M
G
L
K
C
Y
P
K
V
S
D
V
P
D
---
K
V
D
V
A
V
I
S
V
P
S
D
K
V
L
G
V
I
D
D
C
G
K
A
G
V
K
F
A
V
V
I
-------------------
T
S
G
F
K
E
V
G
N
E
E
L
E
E
E
L
V
R
R
A
H
S
Y
G
M
R
V
L
G
PNIF
G
Y
L
Y
APARLNATFGPKDVLSGN
V
A
F
I
S
QSG
A
L
G
I
A
L
M
G
Y
T
V
V
E
NIGIS
S
I
V
S
VGNKADLD
D
V
D
L
L
D
F
F
D
K
DPNTG
V
I
M
I
YLEGIAPGR
G
R
M
F
I
D
V
A
S
R
V
S
L
R
K
P
I
I
V
IKAGRT
E
V
G
A
R
A
A
A
S
H
T
GSIAGS
V
A
I
Y
E
S
A
F
K
Q
S
G
I
L
M
A
KS
V
E
D
A
F
D
W
T
K
A
L
S
W
N
PIPEGER
L
I
V
L
T
NG
G
G
A
G
V
Q
S
T
D
T
F
A
D
N
G
I
Y
L
S
K
PP
E
S
L
I
Q
E
I
K
K
FVPPFASFANPIDITGMAP
D
D
W
Y
Y
M
G
T
L
A
A
L
K
NPDVD
A
L
T
V
L
Y
C
Q
T
AVTT
P
I
G
V
A
K
G
I
V
D
A
I
K
E
A
GNS
K
P
V
T
V
G
M
V
G
G
P
E
V
A
E
A
V
S
F
L
N
K
Q
RIAAYPT
P
E
R
A
S
S
A
M
S
A
L
Y
A
Y
A
R
A
R
S
Y
V
M
K
S
L
AVR
33
HHSearch
56.51
23%
-8
- C3 -
2YV2
-
?
A:
[9-155]
-----------
L
V
D
S
E
T
R
V
L
V
Q
G
I
T
---
G
R
E
G
S
F
H
A
K
A
M
L
E
Y
-
G
T
--
K
V
V
A
G
V
T
P
G
K
GG
S
--
E
V
H
G
V
P
V
Y
D
S
V
K
E
A
L
A
E
H
P
E
I
N
T
S
I
V
F
V
P
A
P
F
A
P
D
A
V
Y
E
A
V
D
A
G
I
R
L
V
V
V
I
-
T
E
G
IP
V
------
H
D
T
M
R
F
V
N
Y
A
R
Q
K
G
A
T
I
I
G
P
N
C
P
G
A
I
T
P
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------